ContrastStatTest.NA {metaGE} | R Documentation |
The function ContrastStatTest compute the statistic of the contrast test.
ContrastStatTest.NA(
Incidence,
Contrast = NULL,
Zmat,
MatCorr,
Data,
Configs.list,
IncidenceName
)
Incidence |
A matrix of incidence, as obtained from metaGE.incidence. |
Contrast |
A matrix of contrast, if NULL the identity matrix is used. ( |
Zmat |
A matrix containing the Zscores of all markers (in rows) in each environment (in columns). |
MatCorr |
The inter-environments correlation matrix. Can be computed using |
Data |
A dataset containing the effect, the pvalues and the na configuration for all marker |
Configs.list |
A vector containing the |
IncidenceName |
The name of the incidence. |
A dataset of two columns containing the pvalue of the test of contrast and the minimum number of environment per group of all markers.