%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  anomaly
%global packver   4.3.3
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          4.3.3
Release:          1%{?dist}%{?buildtag}
Summary:          Detecting Anomalies in Data

License:          GPL
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildRequires:    R-CRAN-Rcpp >= 0.12.18
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-xts 
BuildRequires:    R-CRAN-zoo 
BuildRequires:    R-CRAN-Rdpack 
BuildRequires:    R-CRAN-cowplot 
BuildRequires:    R-CRAN-BH 
Requires:         R-CRAN-Rcpp >= 0.12.18
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-tidyr 
Requires:         R-methods 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-xts 
Requires:         R-CRAN-zoo 
Requires:         R-CRAN-Rdpack 
Requires:         R-CRAN-cowplot 

%description
Implements Collective And Point Anomaly (CAPA) Fisch, Eckley, and
Fearnhead (2022) <doi:10.1002/sam.11586>, Multi-Variate Collective And
Point Anomaly (MVCAPA) Fisch, Eckley, and Fearnhead (2021)
<doi:10.1080/10618600.2021.1987257>, Proportion Adaptive Segment Selection
(PASS) Jeng, Cai, and Li (2012) <doi:10.1093/biomet/ass059>, and Bayesian
Abnormal Region Detector (BARD) Bardwell and Fearnhead (2015)
<doi:10.1214/16-BA998>. These methods are for the detection of anomalies
in time series data. Further information regarding the use of this package
along with detailed examples can be found in Fisch, Grose, Eckley,
Fearnhead, and Bardwell (2024) <doi:10.18637/jss.v110.i01>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}