calc_all {samplr} | R Documentation |
Calculates all diagnostic functions in the samplr package for a given chain. Optionally, plots them.
calc_all(chain, plot = TRUE, acf.alpha = 0.05, acf.lag.max = 100)
chain |
Vector of n length, where n is the number of trials or sampler iterations |
plot |
Boolean. Whether to additionally plot the diagnostics. |
acf.alpha , acf.lag.max |
Additional parameters to calc_autocorr. |
A list with all diagnostic calculations (a list of lists); and optionally a grid of plots.
set.seed(1)
chain1 <- sampler_mh(1, "norm", c(0,1), diag(1))
diagnostics <- calc_all(chain1[[1]])
names(diagnostics)