| calculate_gene_rank {inferCSN} | R Documentation |
Rank TFs and genes in network
calculate_gene_rank(
network_table,
regulators = NULL,
targets = NULL,
directed = FALSE
)
network_table |
The weight data table of network. |
regulators |
Regulators list. |
targets |
Targets list. |
directed |
Whether the network is directed. |
A table of gene rank.
data("example_matrix")
network_table <- inferCSN(example_matrix)
head(calculate_gene_rank(network_table))
head(calculate_gene_rank(network_table, regulators = "g1"))
head(calculate_gene_rank(network_table, targets = "g1"))