%global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname walker %global packver 1.0.10 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} Version: 1.0.10 Release: 1%{?dist}%{?buildtag} Summary: Bayesian Generalized Linear Models with Time-Varying Coefficients License: GPL (>= 3) URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 3.4.0 Requires: R-core >= 3.4.0 BuildRequires: R-CRAN-rstan >= 2.26.0 BuildRequires: R-CRAN-StanHeaders >= 2.26.0 BuildRequires: R-CRAN-rstantools >= 2.0.0 BuildRequires: R-CRAN-BH >= 1.66.0 BuildRequires: R-CRAN-RcppEigen >= 0.3.3.3.0 BuildRequires: R-CRAN-Rcpp >= 0.12.9 BuildRequires: R-CRAN-bayesplot BuildRequires: R-CRAN-coda BuildRequires: R-CRAN-dplyr BuildRequires: R-CRAN-Hmisc BuildRequires: R-CRAN-ggplot2 BuildRequires: R-CRAN-KFAS BuildRequires: R-CRAN-loo BuildRequires: R-methods BuildRequires: R-CRAN-RcppParallel BuildRequires: R-CRAN-rlang BuildRequires: R-CRAN-RcppArmadillo BuildRequires: R-CRAN-rstantools Requires: R-CRAN-rstan >= 2.26.0 Requires: R-CRAN-rstantools >= 2.0.0 Requires: R-CRAN-Rcpp >= 0.12.9 Requires: R-CRAN-bayesplot Requires: R-CRAN-coda Requires: R-CRAN-dplyr Requires: R-CRAN-Hmisc Requires: R-CRAN-ggplot2 Requires: R-CRAN-KFAS Requires: R-CRAN-loo Requires: R-methods Requires: R-CRAN-RcppParallel Requires: R-CRAN-rlang Requires: R-CRAN-rstantools %description Efficient Bayesian generalized linear models with time-varying coefficients as in Helske (2022, ). Gaussian, Poisson, and binomial observations are supported. The Markov chain Monte Carlo (MCMC) computations are done using Hamiltonian Monte Carlo provided by Stan, using a state space representation of the model in order to marginalise over the coefficients for efficient sampling. For non-Gaussian models, the package uses the importance sampling type estimators based on approximate marginal MCMC as in Vihola, Helske, Franks (2020, ). %prep %setup -q -c -n %{packname} # fix end of executable files find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; # prevent binary stripping [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ sed -i 's@-g0@@g' {} \; || true # don't allow local prefix in executable scripts find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; %build %install mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css # remove buildroot from installed files find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; %files %{rlibdir}/%{packname}