%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  timereg
%global packver   2.0.6
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          2.0.6
Release:          1%{?dist}%{?buildtag}
Summary:          Flexible Regression Models for Survival Data

License:          GPL (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.15
Requires:         R-core >= 2.15
BuildRequires:    R-CRAN-survival 
BuildRequires:    R-CRAN-lava 
BuildRequires:    R-CRAN-numDeriv 
BuildRequires:    R-stats 
BuildRequires:    R-graphics 
BuildRequires:    R-grDevices 
BuildRequires:    R-utils 
BuildRequires:    R-methods 
Requires:         R-CRAN-survival 
Requires:         R-CRAN-lava 
Requires:         R-CRAN-numDeriv 
Requires:         R-stats 
Requires:         R-graphics 
Requires:         R-grDevices 
Requires:         R-utils 
Requires:         R-methods 

%description
Programs for Martinussen and Scheike (2006), `Dynamic Regression Models
for Survival Data', Springer Verlag.  Plus more recent developments.
Additive survival model, semiparametric proportional odds model, fast
cumulative residuals, excess risk models and more. Flexible competing
risks regression including GOF-tests. Two-stage frailty modelling. PLS for
the additive risk model. Lasso in the 'ahaz' package.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}