dviJoint {dvir} | R Documentation |
This is a redesign of jointDVI()
, with narrower scope (no preprocessing
steps) and more informative output. The output includes the pairwise GLR
matrix based on the joint table.
dviJoint(
dvi,
assignments = NULL,
ignoreSex = FALSE,
disableMutations = FALSE,
maxAssign = 1e+05,
numCores = 1,
cutoff = 0,
verbose = TRUE,
progress = verbose
)
dvi |
A |
assignments |
A data frame containing the assignments to be considered
in the joint analysis. By default, this is automatically generated by
taking all combinations from |
ignoreSex |
A logical, only relevant if |
disableMutations |
Either TRUE, FALSE (default) or NA. If NA, mutation modelling is applied only in families where the reference data are incompatible with the pedigree unless at least one mutation has occurred. |
maxAssign |
A positive integer. If the number of assignments going into the joint calculation exceeds this, the function will abort with an informative error message. Default: 1e5. |
numCores |
An integer; the number of cores used in parallelisation. Default: 1. |
cutoff |
A number; if non-negative, the output table is restricted to LRs equal to or exceeding this value. |
verbose |
A logical. |
progress |
A logical, indicating if a progress bar should be shown. |
A data frame.
dviJoint(example2)