plot_qc_tree {mpactr} | R Documentation |
plot_qc_tree()
visualizes the filtering summary as a treemap. Ion
status (see qc_summary()
) is reported here as percentage of all
pre-filtered ions.
plot_qc_tree(mpactr_object)
mpactr_object |
an |
a tree map plot of class ggplot
.
data <- import_data(example("coculture_peak_table.csv"),
example("metadata.csv"),
format = "Progenesis"
)
data_filter <- filter_mispicked_ions(data,
ringwin = 0.5,
isowin = 0.01,
trwin = 0.005,
max_iso_shift = 3,
merge_peaks = TRUE
)
plot_qc_tree(data_filter)