Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c108' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8032954-fedora-39-x86_64 --chroot fedora-39-x86_64 Version: 0.73 PID: 10120 Logging PID: 10121 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'bootstrap': 'off', 'build_id': 8032954, 'buildroot_pkgs': [], 'chroot': 'fedora-39-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '93c8ace721dd3e0ab10e022995bcdb67fa4d71d9', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-simer', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-CRAN-simer', 'package_version': '0.9.0.5-1.copr8032954', 'project_dirname': 'cran', 'project_name': 'cran', 'project_owner': 'iucar', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/iucar/cran/fedora-39-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'iucar/cran--iucar', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'iucar', 'tags': [], 'task_id': '8032954-fedora-39-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-simer /var/lib/copr-rpmbuild/workspace/workdir-jl93ldhc/R-CRAN-simer --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-simer', '/var/lib/copr-rpmbuild/workspace/workdir-jl93ldhc/R-CRAN-simer', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-jl93ldhc/R-CRAN-simer'... Running: git checkout 93c8ace721dd3e0ab10e022995bcdb67fa4d71d9 -- cmd: ['git', 'checkout', '93c8ace721dd3e0ab10e022995bcdb67fa4d71d9', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-jl93ldhc/R-CRAN-simer rc: 0 stdout: stderr: Note: switching to '93c8ace721dd3e0ab10e022995bcdb67fa4d71d9'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 93c8ace automatic import of R-CRAN-simer Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-jl93ldhc/R-CRAN-simer rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading simer_0.9.0.5.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o simer_0.9.0.5.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/iucar/cran/R-CRAN-simer/simer_0.9.0.5.tar.gz/md5/0ef48fb3fdeb3b0e40a733617021f92a/simer_0.9.0.5.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 4032k 100 4032k 0 0 19.8M 0 --:--:-- --:--:-- --:--:-- 19.8M INFO: Reading stdout from command: md5sum simer_0.9.0.5.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-jl93ldhc/R-CRAN-simer/R-CRAN-simer.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-jl93ldhc/R-CRAN-simer --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1726710030.752272 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-jl93ldhc/R-CRAN-simer/R-CRAN-simer.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-jl93ldhc/R-CRAN-simer --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1726710030.752272 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-jl93ldhc/R-CRAN-simer/R-CRAN-simer.spec) Config(fedora-39-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1726710030.752272/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.1-1.fc39.noarch python3-dnf-plugins-core-4.9.0-1.fc39.noarch yum-4.21.1-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 30 kB/s | 1.5 kB 00:00 Copr repository 34 MB/s | 27 MB 00:00 fedora 827 kB/s | 31 kB 00:00 updates 763 kB/s | 26 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.26-1.fc39 updates 1.8 M bzip2 x86_64 1.0.8-16.fc39 fedora 52 k coreutils x86_64 9.3-6.fc39 updates 1.1 M cpio x86_64 2.14-4.fc39 fedora 279 k diffutils x86_64 3.10-3.fc39 fedora 398 k fedora-release-common noarch 39-36 updates 19 k findutils x86_64 1:4.9.0-6.fc39 updates 490 k gawk x86_64 5.2.2-2.fc39 fedora 1.1 M glibc-minimal-langpack x86_64 2.38-18.fc39 updates 73 k grep x86_64 3.11-3.fc39 fedora 298 k gzip x86_64 1.12-6.fc39 fedora 166 k info x86_64 7.0.3-3.fc39 fedora 182 k patch x86_64 2.7.6-22.fc39 fedora 125 k redhat-rpm-config noarch 266-1.fc39 updates 78 k rpm-build x86_64 4.19.1.1-1.fc39 updates 78 k sed x86_64 4.8-14.fc39 fedora 306 k shadow-utils x86_64 2:4.14.0-2.fc39 updates 1.3 M tar x86_64 2:1.35-2.fc39 fedora 864 k unzip x86_64 6.0-62.fc39 fedora 184 k util-linux x86_64 2.39.4-1.fc39 updates 1.2 M which x86_64 2.21-40.fc39 fedora 42 k xz x86_64 5.4.4-1.fc39 fedora 556 k Installing dependencies: alternatives x86_64 1.26-1.fc39 updates 39 k ansible-srpm-macros noarch 1-12.fc39 updates 21 k audit-libs x86_64 3.1.5-1.fc39 updates 123 k authselect x86_64 1.4.3-1.fc39 fedora 149 k authselect-libs x86_64 1.4.3-1.fc39 fedora 249 k basesystem noarch 11-18.fc39 fedora 7.2 k binutils x86_64 2.40-14.fc39 updates 5.6 M binutils-gold x86_64 2.40-14.fc39 updates 795 k bzip2-libs x86_64 1.0.8-16.fc39 fedora 41 k ca-certificates noarch 2023.2.60_v7.0.306-2.fc39 fedora 837 k coreutils-common x86_64 9.3-6.fc39 updates 2.1 M cracklib x86_64 2.9.11-2.fc39 fedora 94 k crypto-policies noarch 20231204-1.git1e3a2e4.fc39 updates 100 k curl x86_64 8.2.1-5.fc39 updates 344 k cyrus-sasl-lib x86_64 2.1.28-11.fc39 fedora 793 k debugedit x86_64 5.0-12.fc39 updates 79 k dwz x86_64 0.15-3.fc39 fedora 134 k ed x86_64 1.19-4.fc39 fedora 79 k efi-srpm-macros noarch 5-9.fc39 fedora 22 k elfutils x86_64 0.191-2.fc39 updates 559 k elfutils-debuginfod-client x86_64 0.191-2.fc39 updates 38 k elfutils-default-yama-scope noarch 0.191-2.fc39 updates 13 k elfutils-libelf x86_64 0.191-2.fc39 updates 209 k elfutils-libs x86_64 0.191-2.fc39 updates 263 k fedora-gpg-keys noarch 39-2 updates 130 k fedora-release noarch 39-36 updates 8.6 k fedora-release-identity-basic noarch 39-36 updates 9.4 k fedora-repos noarch 39-2 updates 9.3 k file x86_64 5.44-5.fc39 fedora 49 k file-libs x86_64 5.44-5.fc39 fedora 729 k filesystem x86_64 3.18-6.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k forge-srpm-macros noarch 0.3.1-1.fc39 updates 19 k fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k gdb-minimal x86_64 15.1-1.fc39 updates 4.3 M gdbm-libs x86_64 1:1.23-4.fc39 fedora 56 k ghc-srpm-macros noarch 1.6.1-2.fc39 fedora 7.8 k glibc x86_64 2.38-18.fc39 updates 2.2 M glibc-common x86_64 2.38-18.fc39 updates 353 k glibc-gconv-extra x86_64 2.38-18.fc39 updates 1.6 M gmp x86_64 1:6.2.1-5.fc39 fedora 313 k gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k go-srpm-macros noarch 3.5.0-1.fc39 updates 28 k jansson x86_64 2.13.1-7.fc39 fedora 44 k kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k keyutils-libs x86_64 1.6.3-1.fc39 updates 31 k krb5-libs x86_64 1.21.3-1.fc39 updates 764 k libacl x86_64 2.3.1-9.fc39 updates 23 k libarchive x86_64 3.7.1-2.fc39 updates 407 k libattr x86_64 2.5.1-8.fc39 fedora 18 k libblkid x86_64 2.39.4-1.fc39 updates 116 k libbrotli x86_64 1.1.0-1.fc39 fedora 336 k libcap x86_64 2.48-9.fc39 updates 68 k libcap-ng x86_64 0.8.3-8.fc39 fedora 32 k libcom_err x86_64 1.47.0-2.fc39 fedora 26 k libcurl x86_64 8.2.1-5.fc39 updates 322 k libdb x86_64 5.3.28-56.fc39 fedora 760 k libeconf x86_64 0.5.2-2.fc39 updates 30 k libevent x86_64 2.1.12-9.fc39 fedora 258 k libfdisk x86_64 2.39.4-1.fc39 updates 161 k libffi x86_64 3.4.4-4.fc39 fedora 40 k libgcc x86_64 13.3.1-1.fc39 updates 118 k libgomp x86_64 13.3.1-1.fc39 updates 328 k libidn2 x86_64 2.3.7-1.fc39 updates 119 k libmount x86_64 2.39.4-1.fc39 updates 154 k libnghttp2 x86_64 1.55.1-5.fc39 updates 75 k libnsl2 x86_64 2.0.0-6.fc39 fedora 30 k libpkgconf x86_64 1.9.5-2.fc39 fedora 38 k libpsl x86_64 0.21.2-4.fc39 fedora 63 k libpwquality x86_64 1.4.5-6.fc39 fedora 120 k libselinux x86_64 3.5-5.fc39 fedora 87 k libsemanage x86_64 3.5-4.fc39 fedora 120 k libsepol x86_64 3.5-2.fc39 fedora 324 k libsigsegv x86_64 2.14-5.fc39 fedora 27 k libsmartcols x86_64 2.39.4-1.fc39 updates 67 k libssh x86_64 0.10.6-2.fc39 updates 212 k libssh-config noarch 0.10.6-2.fc39 updates 9.0 k libstdc++ x86_64 13.3.1-1.fc39 updates 869 k libtasn1 x86_64 4.19.0-3.fc39 fedora 74 k libtirpc x86_64 1.3.5-0.fc39 updates 94 k libtool-ltdl x86_64 2.4.7-7.fc39 fedora 36 k libunistring x86_64 1.1-5.fc39 fedora 543 k libutempter x86_64 1.2.1-10.fc39 fedora 26 k libuuid x86_64 2.39.4-1.fc39 updates 28 k libverto x86_64 0.3.2-6.fc39 fedora 20 k libxcrypt x86_64 4.4.36-2.fc39 fedora 119 k libxml2 x86_64 2.10.4-3.fc39 fedora 701 k libzstd x86_64 1.5.6-1.fc39 updates 312 k lua-libs x86_64 5.4.6-3.fc39 fedora 133 k lua-srpm-macros noarch 1-13.fc39 updates 8.7 k lz4-libs x86_64 1.9.4-4.fc39 fedora 67 k mpfr x86_64 4.2.0-3.fc39 fedora 344 k ncurses-base noarch 6.4-7.20230520.fc39.1 updates 88 k ncurses-libs x86_64 6.4-7.20230520.fc39.1 updates 336 k ocaml-srpm-macros noarch 8-2.fc39 fedora 14 k openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k openldap x86_64 2.6.7-1.fc39 updates 254 k openssl-libs x86_64 1:3.1.4-3.fc39 updates 2.2 M p11-kit x86_64 0.25.5-1.fc39 updates 515 k p11-kit-trust x86_64 0.25.5-1.fc39 updates 138 k package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k pam x86_64 1.5.3-3.fc39 updates 542 k pam-libs x86_64 1.5.3-3.fc39 updates 56 k pcre2 x86_64 10.42-1.fc39.2 fedora 233 k pcre2-syntax noarch 10.42-1.fc39.2 fedora 143 k perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k pkgconf x86_64 1.9.5-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k pkgconf-pkg-config x86_64 1.9.5-2.fc39 fedora 9.6 k popt x86_64 1.19-3.fc39 fedora 66 k publicsuffix-list-dafsa noarch 20240107-1.fc39 updates 58 k pyproject-srpm-macros noarch 1.13.0-1.fc39 updates 13 k python-srpm-macros noarch 3.12-8.fc39 updates 23 k qt5-srpm-macros noarch 5.15.14-2.fc39 updates 8.9 k qt6-srpm-macros noarch 6.6.2-1.fc39 updates 8.9 k readline x86_64 8.2-6.fc39 updates 212 k rpm x86_64 4.19.1.1-1.fc39 updates 538 k rpm-build-libs x86_64 4.19.1.1-1.fc39 updates 95 k rpm-libs x86_64 4.19.1.1-1.fc39 updates 312 k rpm-sequoia x86_64 1.7.0-1.fc39 updates 904 k rpmautospec-rpm-macros noarch 0.7.2-1.fc39 updates 10 k rust-srpm-macros noarch 26.3-1.fc39 updates 13 k setup noarch 2.14.4-1.fc39 fedora 154 k sqlite-libs x86_64 3.42.0-7.fc39 fedora 678 k systemd-libs x86_64 254.16-1.fc39 updates 683 k util-linux-core x86_64 2.39.4-1.fc39 updates 507 k xxhash-libs x86_64 0.8.2-1.fc39 fedora 37 k xz-libs x86_64 5.4.4-1.fc39 fedora 108 k zip x86_64 3.0-39.fc39 fedora 266 k zlib x86_64 1.2.13-4.fc39 fedora 94 k zstd x86_64 1.5.6-1.fc39 updates 479 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 153 Packages Total size: 52 M Installed size: 179 M Downloading Packages: [SKIPPED] authselect-1.4.3-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.3-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] basesystem-11-18.fc39.noarch.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-16.fc39.x86_64.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-16.fc39.x86_64.rpm: Already downloaded [SKIPPED] ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch.rpm: Already downloaded [SKIPPED] cpio-2.14-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] cracklib-2.9.11-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.28-11.fc39.x86_64.rpm: Already downloaded [SKIPPED] diffutils-3.10-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] dwz-0.15-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] ed-1.19-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] efi-srpm-macros-5-9.fc39.noarch.rpm: Already downloaded [SKIPPED] file-5.44-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] file-libs-5.44-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] filesystem-3.18-6.fc39.x86_64.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-12.fc39.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-8.fc39.noarch.rpm: Already downloaded [SKIPPED] gawk-5.2.2-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] gdbm-libs-1.23-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] ghc-srpm-macros-1.6.1-2.fc39.noarch.rpm: Already downloaded [SKIPPED] gmp-6.2.1-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] gnat-srpm-macros-6-3.fc39.noarch.rpm: Already downloaded [SKIPPED] grep-3.11-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] gzip-1.12-6.fc39.x86_64.rpm: Already downloaded [SKIPPED] info-7.0.3-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] jansson-2.13.1-7.fc39.x86_64.rpm: Already downloaded [SKIPPED] kernel-srpm-macros-1.0-20.fc39.noarch.rpm: Already downloaded [SKIPPED] libattr-2.5.1-8.fc39.x86_64.rpm: Already downloaded [SKIPPED] libbrotli-1.1.0-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] libcap-ng-0.8.3-8.fc39.x86_64.rpm: Already downloaded [SKIPPED] libcom_err-1.47.0-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libdb-5.3.28-56.fc39.x86_64.rpm: Already downloaded [SKIPPED] libevent-2.1.12-9.fc39.x86_64.rpm: Already downloaded [SKIPPED] libffi-3.4.4-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] libnsl2-2.0.0-6.fc39.x86_64.rpm: Already downloaded [SKIPPED] libpkgconf-1.9.5-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libpsl-0.21.2-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] libpwquality-1.4.5-6.fc39.x86_64.rpm: Already downloaded [SKIPPED] libselinux-3.5-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] libsemanage-3.5-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] libsepol-3.5-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libsigsegv-2.14-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] libtasn1-4.19.0-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] libtool-ltdl-2.4.7-7.fc39.x86_64.rpm: Already downloaded [SKIPPED] libunistring-1.1-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] libutempter-1.2.1-10.fc39.x86_64.rpm: Already downloaded [SKIPPED] libverto-0.3.2-6.fc39.x86_64.rpm: Already downloaded [SKIPPED] libxcrypt-4.4.36-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libxml2-2.10.4-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] lua-libs-5.4.6-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] lz4-libs-1.9.4-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] mpfr-4.2.0-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] ocaml-srpm-macros-8-2.fc39.noarch.rpm: Already downloaded [SKIPPED] 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Running transaction test Transaction test succeeded. 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149/153 Installing : pyproject-srpm-macros-1.13.0-1.fc39.noarch 150/153 Installing : util-linux-2.39.4-1.fc39.x86_64 151/153 Running scriptlet: util-linux-2.39.4-1.fc39.x86_64 151/153 Installing : which-2.21-40.fc39.x86_64 152/153 Installing : info-7.0.3-3.fc39.x86_64 153/153 Running scriptlet: filesystem-3.18-6.fc39.x86_64 153/153 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 153/153 Running scriptlet: authselect-libs-1.4.3-1.fc39.x86_64 153/153 Running scriptlet: rpm-4.19.1.1-1.fc39.x86_64 153/153 Running scriptlet: info-7.0.3-3.fc39.x86_64 153/153 Verifying : authselect-1.4.3-1.fc39.x86_64 1/153 Verifying : authselect-libs-1.4.3-1.fc39.x86_64 2/153 Verifying : basesystem-11-18.fc39.noarch 3/153 Verifying : bzip2-1.0.8-16.fc39.x86_64 4/153 Verifying : bzip2-libs-1.0.8-16.fc39.x86_64 5/153 Verifying : ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 6/153 Verifying : cpio-2.14-4.fc39.x86_64 7/153 Verifying : cracklib-2.9.11-2.fc39.x86_64 8/153 Verifying : cyrus-sasl-lib-2.1.28-11.fc39.x86_64 9/153 Verifying : diffutils-3.10-3.fc39.x86_64 10/153 Verifying : dwz-0.15-3.fc39.x86_64 11/153 Verifying : ed-1.19-4.fc39.x86_64 12/153 Verifying : efi-srpm-macros-5-9.fc39.noarch 13/153 Verifying : file-5.44-5.fc39.x86_64 14/153 Verifying : file-libs-5.44-5.fc39.x86_64 15/153 Verifying : filesystem-3.18-6.fc39.x86_64 16/153 Verifying : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 17/153 Verifying : fpc-srpm-macros-1.3-8.fc39.noarch 18/153 Verifying : gawk-5.2.2-2.fc39.x86_64 19/153 Verifying : gdbm-libs-1:1.23-4.fc39.x86_64 20/153 Verifying : ghc-srpm-macros-1.6.1-2.fc39.noarch 21/153 Verifying : gmp-1:6.2.1-5.fc39.x86_64 22/153 Verifying : gnat-srpm-macros-6-3.fc39.noarch 23/153 Verifying : grep-3.11-3.fc39.x86_64 24/153 Verifying : gzip-1.12-6.fc39.x86_64 25/153 Verifying : info-7.0.3-3.fc39.x86_64 26/153 Verifying : jansson-2.13.1-7.fc39.x86_64 27/153 Verifying : kernel-srpm-macros-1.0-20.fc39.noarch 28/153 Verifying : libattr-2.5.1-8.fc39.x86_64 29/153 Verifying : libbrotli-1.1.0-1.fc39.x86_64 30/153 Verifying : libcap-ng-0.8.3-8.fc39.x86_64 31/153 Verifying : libcom_err-1.47.0-2.fc39.x86_64 32/153 Verifying : libdb-5.3.28-56.fc39.x86_64 33/153 Verifying : libevent-2.1.12-9.fc39.x86_64 34/153 Verifying : libffi-3.4.4-4.fc39.x86_64 35/153 Verifying : libnsl2-2.0.0-6.fc39.x86_64 36/153 Verifying : libpkgconf-1.9.5-2.fc39.x86_64 37/153 Verifying : libpsl-0.21.2-4.fc39.x86_64 38/153 Verifying : libpwquality-1.4.5-6.fc39.x86_64 39/153 Verifying : libselinux-3.5-5.fc39.x86_64 40/153 Verifying : libsemanage-3.5-4.fc39.x86_64 41/153 Verifying : libsepol-3.5-2.fc39.x86_64 42/153 Verifying : libsigsegv-2.14-5.fc39.x86_64 43/153 Verifying : libtasn1-4.19.0-3.fc39.x86_64 44/153 Verifying : libtool-ltdl-2.4.7-7.fc39.x86_64 45/153 Verifying : libunistring-1.1-5.fc39.x86_64 46/153 Verifying : libutempter-1.2.1-10.fc39.x86_64 47/153 Verifying : libverto-0.3.2-6.fc39.x86_64 48/153 Verifying : libxcrypt-4.4.36-2.fc39.x86_64 49/153 Verifying : libxml2-2.10.4-3.fc39.x86_64 50/153 Verifying : lua-libs-5.4.6-3.fc39.x86_64 51/153 Verifying : lz4-libs-1.9.4-4.fc39.x86_64 52/153 Verifying : mpfr-4.2.0-3.fc39.x86_64 53/153 Verifying : ocaml-srpm-macros-8-2.fc39.noarch 54/153 Verifying : openblas-srpm-macros-2-14.fc39.noarch 55/153 Verifying : package-notes-srpm-macros-0.5-9.fc39.noarch 56/153 Verifying : patch-2.7.6-22.fc39.x86_64 57/153 Verifying : pcre2-10.42-1.fc39.2.x86_64 58/153 Verifying : pcre2-syntax-10.42-1.fc39.2.noarch 59/153 Verifying : perl-srpm-macros-1-51.fc39.noarch 60/153 Verifying : pkgconf-1.9.5-2.fc39.x86_64 61/153 Verifying : pkgconf-m4-1.9.5-2.fc39.noarch 62/153 Verifying : pkgconf-pkg-config-1.9.5-2.fc39.x86_64 63/153 Verifying : popt-1.19-3.fc39.x86_64 64/153 Verifying : sed-4.8-14.fc39.x86_64 65/153 Verifying : setup-2.14.4-1.fc39.noarch 66/153 Verifying : sqlite-libs-3.42.0-7.fc39.x86_64 67/153 Verifying : tar-2:1.35-2.fc39.x86_64 68/153 Verifying : unzip-6.0-62.fc39.x86_64 69/153 Verifying : which-2.21-40.fc39.x86_64 70/153 Verifying : xxhash-libs-0.8.2-1.fc39.x86_64 71/153 Verifying : xz-5.4.4-1.fc39.x86_64 72/153 Verifying : xz-libs-5.4.4-1.fc39.x86_64 73/153 Verifying : zip-3.0-39.fc39.x86_64 74/153 Verifying : zlib-1.2.13-4.fc39.x86_64 75/153 Verifying : alternatives-1.26-1.fc39.x86_64 76/153 Verifying : ansible-srpm-macros-1-12.fc39.noarch 77/153 Verifying : audit-libs-3.1.5-1.fc39.x86_64 78/153 Verifying : bash-5.2.26-1.fc39.x86_64 79/153 Verifying : binutils-2.40-14.fc39.x86_64 80/153 Verifying : binutils-gold-2.40-14.fc39.x86_64 81/153 Verifying : coreutils-9.3-6.fc39.x86_64 82/153 Verifying : coreutils-common-9.3-6.fc39.x86_64 83/153 Verifying : crypto-policies-20231204-1.git1e3a2e4.fc39.noarc 84/153 Verifying : curl-8.2.1-5.fc39.x86_64 85/153 Verifying : debugedit-5.0-12.fc39.x86_64 86/153 Verifying : elfutils-0.191-2.fc39.x86_64 87/153 Verifying : elfutils-debuginfod-client-0.191-2.fc39.x86_64 88/153 Verifying : elfutils-default-yama-scope-0.191-2.fc39.noarch 89/153 Verifying : elfutils-libelf-0.191-2.fc39.x86_64 90/153 Verifying : elfutils-libs-0.191-2.fc39.x86_64 91/153 Verifying : fedora-gpg-keys-39-2.noarch 92/153 Verifying : fedora-release-39-36.noarch 93/153 Verifying : fedora-release-common-39-36.noarch 94/153 Verifying : fedora-release-identity-basic-39-36.noarch 95/153 Verifying : fedora-repos-39-2.noarch 96/153 Verifying : findutils-1:4.9.0-6.fc39.x86_64 97/153 Verifying : forge-srpm-macros-0.3.1-1.fc39.noarch 98/153 Verifying : gdb-minimal-15.1-1.fc39.x86_64 99/153 Verifying : glibc-2.38-18.fc39.x86_64 100/153 Verifying : glibc-common-2.38-18.fc39.x86_64 101/153 Verifying : glibc-gconv-extra-2.38-18.fc39.x86_64 102/153 Verifying : glibc-minimal-langpack-2.38-18.fc39.x86_64 103/153 Verifying : go-srpm-macros-3.5.0-1.fc39.noarch 104/153 Verifying : keyutils-libs-1.6.3-1.fc39.x86_64 105/153 Verifying : krb5-libs-1.21.3-1.fc39.x86_64 106/153 Verifying : libacl-2.3.1-9.fc39.x86_64 107/153 Verifying : libarchive-3.7.1-2.fc39.x86_64 108/153 Verifying : libblkid-2.39.4-1.fc39.x86_64 109/153 Verifying : libcap-2.48-9.fc39.x86_64 110/153 Verifying : libcurl-8.2.1-5.fc39.x86_64 111/153 Verifying : libeconf-0.5.2-2.fc39.x86_64 112/153 Verifying : libfdisk-2.39.4-1.fc39.x86_64 113/153 Verifying : libgcc-13.3.1-1.fc39.x86_64 114/153 Verifying : libgomp-13.3.1-1.fc39.x86_64 115/153 Verifying : libidn2-2.3.7-1.fc39.x86_64 116/153 Verifying : libmount-2.39.4-1.fc39.x86_64 117/153 Verifying : libnghttp2-1.55.1-5.fc39.x86_64 118/153 Verifying : libsmartcols-2.39.4-1.fc39.x86_64 119/153 Verifying : libssh-0.10.6-2.fc39.x86_64 120/153 Verifying : libssh-config-0.10.6-2.fc39.noarch 121/153 Verifying : libstdc++-13.3.1-1.fc39.x86_64 122/153 Verifying : libtirpc-1.3.5-0.fc39.x86_64 123/153 Verifying : libuuid-2.39.4-1.fc39.x86_64 124/153 Verifying : libzstd-1.5.6-1.fc39.x86_64 125/153 Verifying : lua-srpm-macros-1-13.fc39.noarch 126/153 Verifying : ncurses-base-6.4-7.20230520.fc39.1.noarch 127/153 Verifying : ncurses-libs-6.4-7.20230520.fc39.1.x86_64 128/153 Verifying : openldap-2.6.7-1.fc39.x86_64 129/153 Verifying : openssl-libs-1:3.1.4-3.fc39.x86_64 130/153 Verifying : p11-kit-0.25.5-1.fc39.x86_64 131/153 Verifying : p11-kit-trust-0.25.5-1.fc39.x86_64 132/153 Verifying : pam-1.5.3-3.fc39.x86_64 133/153 Verifying : pam-libs-1.5.3-3.fc39.x86_64 134/153 Verifying : publicsuffix-list-dafsa-20240107-1.fc39.noarch 135/153 Verifying : pyproject-srpm-macros-1.13.0-1.fc39.noarch 136/153 Verifying : python-srpm-macros-3.12-8.fc39.noarch 137/153 Verifying : qt5-srpm-macros-5.15.14-2.fc39.noarch 138/153 Verifying : qt6-srpm-macros-6.6.2-1.fc39.noarch 139/153 Verifying : readline-8.2-6.fc39.x86_64 140/153 Verifying : redhat-rpm-config-266-1.fc39.noarch 141/153 Verifying : rpm-4.19.1.1-1.fc39.x86_64 142/153 Verifying : rpm-build-4.19.1.1-1.fc39.x86_64 143/153 Verifying : rpm-build-libs-4.19.1.1-1.fc39.x86_64 144/153 Verifying : rpm-libs-4.19.1.1-1.fc39.x86_64 145/153 Verifying : rpm-sequoia-1.7.0-1.fc39.x86_64 146/153 Verifying : rpmautospec-rpm-macros-0.7.2-1.fc39.noarch 147/153 Verifying : rust-srpm-macros-26.3-1.fc39.noarch 148/153 Verifying : shadow-utils-2:4.14.0-2.fc39.x86_64 149/153 Verifying : systemd-libs-254.16-1.fc39.x86_64 150/153 Verifying : util-linux-2.39.4-1.fc39.x86_64 151/153 Verifying : util-linux-core-2.39.4-1.fc39.x86_64 152/153 Verifying : zstd-1.5.6-1.fc39.x86_64 153/153 Installed products updated. Installed: alternatives-1.26-1.fc39.x86_64 ansible-srpm-macros-1-12.fc39.noarch audit-libs-3.1.5-1.fc39.x86_64 authselect-1.4.3-1.fc39.x86_64 authselect-libs-1.4.3-1.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.26-1.fc39.x86_64 binutils-2.40-14.fc39.x86_64 binutils-gold-2.40-14.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch coreutils-9.3-6.fc39.x86_64 coreutils-common-9.3-6.fc39.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231204-1.git1e3a2e4.fc39.noarch curl-8.2.1-5.fc39.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-12.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.191-2.fc39.x86_64 elfutils-debuginfod-client-0.191-2.fc39.x86_64 elfutils-default-yama-scope-0.191-2.fc39.noarch elfutils-libelf-0.191-2.fc39.x86_64 elfutils-libs-0.191-2.fc39.x86_64 fedora-gpg-keys-39-2.noarch fedora-release-39-36.noarch fedora-release-common-39-36.noarch fedora-release-identity-basic-39-36.noarch fedora-repos-39-2.noarch file-5.44-5.fc39.x86_64 file-libs-5.44-5.fc39.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-1:4.9.0-6.fc39.x86_64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.3.1-1.fc39.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-15.1-1.fc39.x86_64 gdbm-libs-1:1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38-18.fc39.x86_64 glibc-common-2.38-18.fc39.x86_64 glibc-gconv-extra-2.38-18.fc39.x86_64 glibc-minimal-langpack-2.38-18.fc39.x86_64 gmp-1:6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.5.0-1.fc39.noarch grep-3.11-3.fc39.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc39.x86_64 krb5-libs-1.21.3-1.fc39.x86_64 libacl-2.3.1-9.fc39.x86_64 libarchive-3.7.1-2.fc39.x86_64 libattr-2.5.1-8.fc39.x86_64 libblkid-2.39.4-1.fc39.x86_64 libbrotli-1.1.0-1.fc39.x86_64 libcap-2.48-9.fc39.x86_64 libcap-ng-0.8.3-8.fc39.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.2.1-5.fc39.x86_64 libdb-5.3.28-56.fc39.x86_64 libeconf-0.5.2-2.fc39.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.4-1.fc39.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.3.1-1.fc39.x86_64 libgomp-13.3.1-1.fc39.x86_64 libidn2-2.3.7-1.fc39.x86_64 libmount-2.39.4-1.fc39.x86_64 libnghttp2-1.55.1-5.fc39.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.4-1.fc39.x86_64 libssh-0.10.6-2.fc39.x86_64 libssh-config-0.10.6-2.fc39.noarch libstdc++-13.3.1-1.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.5-0.fc39.x86_64 libtool-ltdl-2.4.7-7.fc39.x86_64 libunistring-1.1-5.fc39.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.4-1.fc39.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 libzstd-1.5.6-1.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-13.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc39.1.noarch ncurses-libs-6.4-7.20230520.fc39.1.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.7-1.fc39.x86_64 openssl-libs-1:3.1.4-3.fc39.x86_64 p11-kit-0.25.5-1.fc39.x86_64 p11-kit-trust-0.25.5-1.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-3.fc39.x86_64 pam-libs-1.5.3-3.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20240107-1.fc39.noarch pyproject-srpm-macros-1.13.0-1.fc39.noarch python-srpm-macros-3.12-8.fc39.noarch qt5-srpm-macros-5.15.14-2.fc39.noarch qt6-srpm-macros-6.6.2-1.fc39.noarch readline-8.2-6.fc39.x86_64 redhat-rpm-config-266-1.fc39.noarch rpm-4.19.1.1-1.fc39.x86_64 rpm-build-4.19.1.1-1.fc39.x86_64 rpm-build-libs-4.19.1.1-1.fc39.x86_64 rpm-libs-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.7.0-1.fc39.x86_64 rpmautospec-rpm-macros-0.7.2-1.fc39.noarch rust-srpm-macros-26.3-1.fc39.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-2:4.14.0-2.fc39.x86_64 sqlite-libs-3.42.0-7.fc39.x86_64 systemd-libs-254.16-1.fc39.x86_64 tar-2:1.35-2.fc39.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.4-1.fc39.x86_64 util-linux-core-2.39.4-1.fc39.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-39.fc39.x86_64 zlib-1.2.13-4.fc39.x86_64 zstd-1.5.6-1.fc39.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-1.fc39.x86_64 ansible-srpm-macros-1-12.fc39.noarch audit-libs-3.1.5-1.fc39.x86_64 authselect-1.4.3-1.fc39.x86_64 authselect-libs-1.4.3-1.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.26-1.fc39.x86_64 binutils-2.40-14.fc39.x86_64 binutils-gold-2.40-14.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch coreutils-9.3-6.fc39.x86_64 coreutils-common-9.3-6.fc39.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231204-1.git1e3a2e4.fc39.noarch curl-8.2.1-5.fc39.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-12.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.191-2.fc39.x86_64 elfutils-debuginfod-client-0.191-2.fc39.x86_64 elfutils-default-yama-scope-0.191-2.fc39.noarch elfutils-libelf-0.191-2.fc39.x86_64 elfutils-libs-0.191-2.fc39.x86_64 fedora-gpg-keys-39-2.noarch fedora-release-39-36.noarch fedora-release-common-39-36.noarch fedora-release-identity-basic-39-36.noarch fedora-repos-39-2.noarch file-5.44-5.fc39.x86_64 file-libs-5.44-5.fc39.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-4.9.0-6.fc39.x86_64 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.3.1-1.fc39.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-15.1-1.fc39.x86_64 gdbm-libs-1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38-18.fc39.x86_64 glibc-common-2.38-18.fc39.x86_64 glibc-gconv-extra-2.38-18.fc39.x86_64 glibc-minimal-langpack-2.38-18.fc39.x86_64 gmp-6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.5.0-1.fc39.noarch gpg-pubkey-18b8e74c-62f2920f grep-3.11-3.fc39.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc39.x86_64 krb5-libs-1.21.3-1.fc39.x86_64 libacl-2.3.1-9.fc39.x86_64 libarchive-3.7.1-2.fc39.x86_64 libattr-2.5.1-8.fc39.x86_64 libblkid-2.39.4-1.fc39.x86_64 libbrotli-1.1.0-1.fc39.x86_64 libcap-2.48-9.fc39.x86_64 libcap-ng-0.8.3-8.fc39.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.2.1-5.fc39.x86_64 libdb-5.3.28-56.fc39.x86_64 libeconf-0.5.2-2.fc39.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.4-1.fc39.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.3.1-1.fc39.x86_64 libgomp-13.3.1-1.fc39.x86_64 libidn2-2.3.7-1.fc39.x86_64 libmount-2.39.4-1.fc39.x86_64 libnghttp2-1.55.1-5.fc39.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.4-1.fc39.x86_64 libssh-0.10.6-2.fc39.x86_64 libssh-config-0.10.6-2.fc39.noarch libstdc++-13.3.1-1.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.5-0.fc39.x86_64 libtool-ltdl-2.4.7-7.fc39.x86_64 libunistring-1.1-5.fc39.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.4-1.fc39.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 libzstd-1.5.6-1.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-13.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc39.1.noarch ncurses-libs-6.4-7.20230520.fc39.1.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.7-1.fc39.x86_64 openssl-libs-3.1.4-3.fc39.x86_64 p11-kit-0.25.5-1.fc39.x86_64 p11-kit-trust-0.25.5-1.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-3.fc39.x86_64 pam-libs-1.5.3-3.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20240107-1.fc39.noarch pyproject-srpm-macros-1.13.0-1.fc39.noarch python-srpm-macros-3.12-8.fc39.noarch qt5-srpm-macros-5.15.14-2.fc39.noarch qt6-srpm-macros-6.6.2-1.fc39.noarch readline-8.2-6.fc39.x86_64 redhat-rpm-config-266-1.fc39.noarch rpm-4.19.1.1-1.fc39.x86_64 rpm-build-4.19.1.1-1.fc39.x86_64 rpm-build-libs-4.19.1.1-1.fc39.x86_64 rpm-libs-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.7.0-1.fc39.x86_64 rpmautospec-rpm-macros-0.7.2-1.fc39.noarch rust-srpm-macros-26.3-1.fc39.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-4.14.0-2.fc39.x86_64 sqlite-libs-3.42.0-7.fc39.x86_64 systemd-libs-254.16-1.fc39.x86_64 tar-1.35-2.fc39.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.4-1.fc39.x86_64 util-linux-core-2.39.4-1.fc39.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-39.fc39.x86_64 zlib-1.2.13-4.fc39.x86_64 zstd-1.5.6-1.fc39.x86_64 Start: buildsrpm Start: rpmbuild -bs warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-39-x86_64-1726710030.752272/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1726710030.752272/root/var/log/dnf.log /var/lib/mock/fedora-39-x86_64-1726710030.752272/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1726710030.752272/root/var/log/dnf.rpm.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-jl93ldhc/R-CRAN-simer/R-CRAN-simer.spec) Config(child) 0 minutes 26 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.src.rpm) Config(fedora-39-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1726710030.752272/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.1-1.fc39.noarch python3-dnf-plugins-core-4.9.0-1.fc39.noarch yum-4.21.1-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Finish: chroot init Start: build phase for R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.src.rpm Start: build setup for R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 36 kB/s | 1.5 kB 00:00 Copr repository 28 MB/s | 27 MB 00:00 fedora 861 kB/s | 31 kB 00:00 updates 957 kB/s | 26 kB 00:00 Dependencies resolved. ========================================================================================== Package Arch Version Repo Size ========================================================================================== Installing: R-CRAN-BH noarch 1.84.0.0-1.fc39.copr6880886 copr_base 9.8 M R-CRAN-MASS x86_64 7.3.60.0.1-1.fc39.copr6895092 copr_base 1.2 M R-CRAN-Matrix x86_64 1.6.5-1.fc39.copr6886765 copr_base 4.1 M R-CRAN-Rcpp x86_64 1.0.13-1.fc39.copr7745410 copr_base 2.0 M R-CRAN-RcppArmadillo x86_64 14.0.2.1-1.fc39.copr8016517 copr_base 918 k R-CRAN-RcppProgress noarch 0.4.2-3.fc39.copr6279637 copr_base 35 k R-CRAN-bigmemory x86_64 4.6.4-1.fc39.copr6877563 copr_base 496 k R-CRAN-jsonlite x86_64 1.8.8-1.fc39.copr6724909 copr_base 636 k R-core x86_64 4.3.3-2.fc39 updates 64 M R-devel x86_64 4.3.3-2.fc39 updates 10 k Installing dependencies: R-CRAN-bigmemory.sri noarch 0.1.8-1.fc39.copr6880887 copr_base 22 k R-CRAN-lattice x86_64 0.22.6-1.fc39.copr7307082 copr_base 1.4 M R-CRAN-uuid x86_64 1.2.1-1.fc39.copr7803040 copr_base 62 k R-core-devel x86_64 4.3.3-2.fc39 updates 93 k R-java x86_64 4.3.3-2.fc39 updates 11 k R-java-devel x86_64 4.3.3-2.fc39 updates 10 k R-littler x86_64 0.3.19-1.fc39 updates 76 k R-rpm-macros noarch 1.2.1-7.fc39 fedora 11 k abattis-cantarell-vf-fonts noarch 0.301-10.fc39 fedora 121 k alsa-lib x86_64 1.2.12-1.fc39 updates 521 k annobin-docs noarch 12.60-1.fc39 updates 88 k annobin-plugin-gcc x86_64 12.60-1.fc39 updates 965 k avahi-libs x86_64 0.8-24.fc39 fedora 67 k brotli x86_64 1.1.0-1.fc39 fedora 20 k brotli-devel x86_64 1.1.0-1.fc39 fedora 34 k bzip2-devel x86_64 1.0.8-16.fc39 fedora 214 k cairo x86_64 1.18.0-1.fc39 fedora 710 k cmake-filesystem x86_64 3.27.7-1.fc39 fedora 19 k copy-jdk-configs noarch 4.1-3.fc39 fedora 28 k cpp x86_64 13.3.1-1.fc39 updates 11 M crypto-policies-scripts noarch 20231204-1.git1e3a2e4.fc39 updates 117 k cups-libs x86_64 1:2.4.10-6.fc39 updates 269 k dbus-libs x86_64 1:1.14.10-1.fc39 fedora 156 k default-fonts-core-sans noarch 4.0-9.fc39 fedora 32 k desktop-file-utils x86_64 0.26-9.fc39 fedora 72 k emacs-filesystem noarch 1:29.4-2.fc39 updates 7.3 k expat x86_64 2.6.2-1.fc39 updates 114 k flexiblas x86_64 3.4.4-1.fc39 updates 25 k flexiblas-devel x86_64 3.4.4-1.fc39 updates 121 k flexiblas-netlib x86_64 3.4.4-1.fc39 updates 3.1 M flexiblas-netlib64 x86_64 3.4.4-1.fc39 updates 3.0 M flexiblas-openblas-openmp x86_64 3.4.4-1.fc39 updates 17 k flexiblas-openblas-openmp64 x86_64 3.4.4-1.fc39 updates 17 k fontconfig x86_64 2.14.2-6.fc39 updates 296 k fontconfig-devel x86_64 2.14.2-6.fc39 updates 164 k fonts-filesystem noarch 1:2.0.5-12.fc39 fedora 8.2 k freetype x86_64 2.13.1-2.fc39 fedora 414 k freetype-devel x86_64 2.13.1-2.fc39 fedora 950 k fribidi x86_64 1.0.13-2.fc39 fedora 91 k gc x86_64 8.2.2-4.fc39 fedora 110 k gcc x86_64 13.3.1-1.fc39 updates 34 M gcc-c++ x86_64 13.3.1-1.fc39 updates 13 M gcc-gfortran x86_64 13.3.1-1.fc39 updates 12 M gcc-plugin-annobin x86_64 13.3.1-1.fc39 updates 56 k gettext x86_64 0.22-2.fc39 fedora 1.1 M gettext-envsubst x86_64 0.22-2.fc39 fedora 36 k gettext-libs x86_64 0.22-2.fc39 fedora 328 k gettext-runtime x86_64 0.22-2.fc39 fedora 120 k glib2 x86_64 2.78.6-1.fc39 updates 2.8 M glib2-devel x86_64 2.78.6-1.fc39 updates 594 k glibc-devel x86_64 2.38-18.fc39 updates 86 k glibc-headers-x86 noarch 2.38-18.fc39 updates 571 k gnutls x86_64 3.8.6-1.fc39 updates 1.1 M google-noto-fonts-common noarch 20240101-1.fc39 updates 17 k google-noto-sans-vf-fonts noarch 20240101-1.fc39 updates 593 k graphite2 x86_64 1.3.14-12.fc39 fedora 95 k graphite2-devel x86_64 1.3.14-12.fc39 fedora 20 k guile22 x86_64 2.2.7-9.fc39 fedora 6.5 M harfbuzz x86_64 8.2.1-2.fc39 fedora 975 k harfbuzz-devel x86_64 8.2.1-2.fc39 fedora 450 k harfbuzz-icu x86_64 8.2.1-2.fc39 fedora 17 k java-21-openjdk x86_64 1:21.0.4.0.7-2.fc39 updates 426 k java-21-openjdk-devel x86_64 1:21.0.4.0.7-2.fc39 updates 5.0 M java-21-openjdk-headless x86_64 1:21.0.4.0.7-2.fc39 updates 48 M javapackages-filesystem noarch 6.1.0-10.fc39 fedora 12 k jbigkit-libs x86_64 2.1-26.fc39 fedora 53 k kernel-headers x86_64 6.10.3-200.fc39 updates 1.6 M libICE x86_64 1.0.10-11.fc39 fedora 70 k libRmath x86_64 4.3.3-2.fc39 updates 121 k libRmath-devel x86_64 4.3.3-2.fc39 updates 16 k libSM x86_64 1.2.3-13.fc39 fedora 41 k libX11 x86_64 1.8.9-1.fc39 updates 650 k libX11-common noarch 1.8.9-1.fc39 updates 176 k libX11-devel x86_64 1.8.9-1.fc39 updates 1.0 M libX11-xcb x86_64 1.8.9-1.fc39 updates 12 k libXau x86_64 1.0.11-3.fc39 fedora 31 k libXau-devel x86_64 1.0.11-3.fc39 fedora 14 k libXcomposite x86_64 0.4.5-10.fc39 fedora 23 k libXext x86_64 1.3.5-3.fc39 fedora 39 k libXft x86_64 2.3.8-3.fc39 fedora 72 k libXft-devel x86_64 2.3.8-3.fc39 fedora 50 k libXi x86_64 1.8.1-2.fc39 fedora 40 k libXmu x86_64 1.1.4-3.fc39 fedora 76 k libXrender x86_64 0.9.11-3.fc39 fedora 27 k libXrender-devel x86_64 0.9.11-3.fc39 fedora 19 k libXt x86_64 1.2.1-5.fc39 fedora 178 k libXtst x86_64 1.2.4-3.fc39 fedora 20 k libb2 x86_64 0.98.1-9.fc39 fedora 25 k libblkid-devel x86_64 2.39.4-1.fc39 updates 18 k libdatrie x86_64 0.2.13-7.fc39 fedora 32 k libffi-devel x86_64 3.4.4-4.fc39 fedora 29 k libfontenc x86_64 1.1.6-3.fc39 fedora 32 k libgfortran x86_64 13.3.1-1.fc39 updates 906 k libicu x86_64 73.2-2.fc39 fedora 11 M libicu-devel x86_64 73.2-2.fc39 fedora 924 k libjpeg-turbo x86_64 2.1.4-3.fc39 fedora 183 k liblerc x86_64 4.0.0-4.fc39 fedora 201 k libmount-devel x86_64 2.39.4-1.fc39 updates 18 k libmpc x86_64 1.3.1-3.fc39 fedora 70 k libpng x86_64 2:1.6.37-15.fc39 fedora 119 k libpng-devel x86_64 2:1.6.37-15.fc39 fedora 291 k libquadmath x86_64 13.3.1-1.fc39 updates 203 k libquadmath-devel x86_64 13.3.1-1.fc39 updates 45 k libselinux-devel x86_64 3.5-5.fc39 fedora 151 k libsepol-devel x86_64 3.5-2.fc39 fedora 49 k libstdc++-devel x86_64 13.3.1-1.fc39 updates 2.6 M libthai x86_64 0.1.29-6.fc39 fedora 213 k libtiff x86_64 4.4.0-8.fc39 fedora 202 k libtirpc-devel x86_64 1.3.5-0.fc39 updates 125 k libwebp x86_64 1.3.2-2.fc39 fedora 284 k libxcb x86_64 1.13.1-12.fc39 fedora 233 k libxcb-devel x86_64 1.13.1-12.fc39 fedora 1.4 M libxcrypt-devel x86_64 4.4.36-2.fc39 fedora 30 k libxml2-devel x86_64 2.10.4-3.fc39 fedora 527 k lksctp-tools x86_64 1.0.19-4.fc39 fedora 92 k lua x86_64 5.4.6-3.fc39 fedora 191 k lua-posix x86_64 36.2.1-3.fc39 fedora 143 k make x86_64 1:4.4.1-2.fc39 fedora 589 k mkfontscale x86_64 1.2.2-4.fc39 fedora 32 k mpdecimal x86_64 2.5.1-7.fc39 fedora 89 k nettle x86_64 3.9.1-2.fc39 fedora 425 k nspr x86_64 4.35.0-22.fc39 updates 136 k nss x86_64 3.103.0-1.fc39 updates 708 k nss-softokn x86_64 3.103.0-1.fc39 updates 419 k nss-softokn-freebl x86_64 3.103.0-1.fc39 updates 300 k nss-sysinit x86_64 3.103.0-1.fc39 updates 18 k nss-util x86_64 3.103.0-1.fc39 updates 88 k openblas x86_64 0.3.21-6.fc39 fedora 35 k openblas-openmp x86_64 0.3.21-6.fc39 fedora 4.9 M openblas-openmp64 x86_64 0.3.21-6.fc39 fedora 4.8 M pango x86_64 1.51.0-1.fc39 fedora 343 k pcre2-devel x86_64 10.42-1.fc39.2 fedora 505 k pcre2-utf16 x86_64 10.42-1.fc39.2 fedora 212 k pcre2-utf32 x86_64 10.42-1.fc39.2 fedora 200 k pixman x86_64 0.42.2-2.fc39 fedora 288 k python-pip-wheel noarch 23.2.1-2.fc39 updates 1.5 M python3 x86_64 3.12.5-1.fc39 updates 28 k python3-libs x86_64 3.12.5-1.fc39 updates 9.2 M python3-setuptools noarch 67.7.2-8.fc39 updates 1.5 M sysprof-capture-devel x86_64 45.1-1.fc39 updates 59 k tcl x86_64 1:8.6.12-5.fc39 fedora 1.1 M tcl-devel x86_64 1:8.6.12-5.fc39 fedora 169 k tk x86_64 1:8.6.12-5.fc39 fedora 1.6 M tk-devel x86_64 1:8.6.12-5.fc39 fedora 537 k tre x86_64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 43 k tre-common noarch 0.8.0-41.20140228gitc2f5d13.fc39 fedora 31 k tre-devel x86_64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 12 k ttmkfdir x86_64 3.0.9-69.fc39 fedora 56 k tzdata noarch 2024a-2.fc39 updates 715 k tzdata-java noarch 2024a-2.fc39 updates 208 k xdg-utils noarch 1.1.3-15.fc39 fedora 77 k xml-common noarch 0.6.3-61.fc39 fedora 31 k xorg-x11-fonts-Type1 noarch 7.5-36.fc39 fedora 504 k xorg-x11-proto-devel noarch 2023.2-2.fc39 fedora 298 k xz-devel x86_64 5.4.4-1.fc39 fedora 66 k zlib-devel x86_64 1.2.13-4.fc39 fedora 45 k Transaction Summary ========================================================================================== Install 166 Packages Total size: 291 M Total download size: 12 M Installed size: 1.0 G Downloading Packages: [SKIPPED] R-CRAN-MASS-7.3.60.0.1-1.fc39.copr6895092.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-Matrix-1.6.5-1.fc39.copr6886765.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-Rcpp-1.0.13-1.fc39.copr7745410.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-lattice-0.22.6-1.fc39.copr7307082.x86_64.rpm: Already downloaded [SKIPPED] R-rpm-macros-1.2.1-7.fc39.noarch.rpm: Already downloaded [SKIPPED] 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-------------------------------------------------------------------------------- Total 10 MB/s | 12 MB 00:01 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: copy-jdk-configs-4.1-3.fc39.noarch 1/1 Running scriptlet: java-21-openjdk-headless-1:21.0.4.0.7-2.fc39.x86_64 1/1 Preparing : 1/1 Installing : zlib-devel-1.2.13-4.fc39.x86_64 1/166 Installing : nspr-4.35.0-22.fc39.x86_64 2/166 Installing : libgfortran-13.3.1-1.fc39.x86_64 3/166 Installing : nss-util-3.103.0-1.fc39.x86_64 4/166 Installing : libquadmath-13.3.1-1.fc39.x86_64 5/166 Installing : xorg-x11-proto-devel-2023.2-2.fc39.noarch 6/166 Installing : libpng-2:1.6.37-15.fc39.x86_64 7/166 Installing : libmpc-1.3.1-3.fc39.x86_64 8/166 Installing : tcl-1:8.6.12-5.fc39.x86_64 9/166 Installing : libicu-73.2-2.fc39.x86_64 10/166 Installing : fonts-filesystem-1:2.0.5-12.fc39.noarch 11/166 Installing : libicu-devel-73.2-2.fc39.x86_64 12/166 Installing : tcl-devel-1:8.6.12-5.fc39.x86_64 13/166 Installing : libRmath-4.3.3-2.fc39.x86_64 14/166 Installing : xz-devel-5.4.4-1.fc39.x86_64 15/166 Installing : openblas-0.3.21-6.fc39.x86_64 16/166 Installing : 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xorg-x11-proto-devel-2023.2-2.fc39.noarch 101/166 Verifying : xz-devel-5.4.4-1.fc39.x86_64 102/166 Verifying : zlib-devel-1.2.13-4.fc39.x86_64 103/166 Verifying : R-core-4.3.3-2.fc39.x86_64 104/166 Verifying : R-core-devel-4.3.3-2.fc39.x86_64 105/166 Verifying : R-devel-4.3.3-2.fc39.x86_64 106/166 Verifying : R-java-4.3.3-2.fc39.x86_64 107/166 Verifying : R-java-devel-4.3.3-2.fc39.x86_64 108/166 Verifying : R-littler-0.3.19-1.fc39.x86_64 109/166 Verifying : alsa-lib-1.2.12-1.fc39.x86_64 110/166 Verifying : annobin-docs-12.60-1.fc39.noarch 111/166 Verifying : annobin-plugin-gcc-12.60-1.fc39.x86_64 112/166 Verifying : cpp-13.3.1-1.fc39.x86_64 113/166 Verifying : crypto-policies-scripts-20231204-1.git1e3a2e4.fc 114/166 Verifying : cups-libs-1:2.4.10-6.fc39.x86_64 115/166 Verifying : emacs-filesystem-1:29.4-2.fc39.noarch 116/166 Verifying : expat-2.6.2-1.fc39.x86_64 117/166 Verifying : flexiblas-3.4.4-1.fc39.x86_64 118/166 Verifying : flexiblas-devel-3.4.4-1.fc39.x86_64 119/166 Verifying : flexiblas-netlib-3.4.4-1.fc39.x86_64 120/166 Verifying : flexiblas-netlib64-3.4.4-1.fc39.x86_64 121/166 Verifying : flexiblas-openblas-openmp-3.4.4-1.fc39.x86_64 122/166 Verifying : flexiblas-openblas-openmp64-3.4.4-1.fc39.x86_64 123/166 Verifying : fontconfig-2.14.2-6.fc39.x86_64 124/166 Verifying : fontconfig-devel-2.14.2-6.fc39.x86_64 125/166 Verifying : gcc-13.3.1-1.fc39.x86_64 126/166 Verifying : gcc-c++-13.3.1-1.fc39.x86_64 127/166 Verifying : gcc-gfortran-13.3.1-1.fc39.x86_64 128/166 Verifying : gcc-plugin-annobin-13.3.1-1.fc39.x86_64 129/166 Verifying : glib2-2.78.6-1.fc39.x86_64 130/166 Verifying : glib2-devel-2.78.6-1.fc39.x86_64 131/166 Verifying : glibc-devel-2.38-18.fc39.x86_64 132/166 Verifying : glibc-headers-x86-2.38-18.fc39.noarch 133/166 Verifying : gnutls-3.8.6-1.fc39.x86_64 134/166 Verifying : google-noto-fonts-common-20240101-1.fc39.noarch 135/166 Verifying : google-noto-sans-vf-fonts-20240101-1.fc39.noarch 136/166 Verifying : java-21-openjdk-1:21.0.4.0.7-2.fc39.x86_64 137/166 Verifying : java-21-openjdk-devel-1:21.0.4.0.7-2.fc39.x86_64 138/166 Verifying : java-21-openjdk-headless-1:21.0.4.0.7-2.fc39.x86 139/166 Verifying : kernel-headers-6.10.3-200.fc39.x86_64 140/166 Verifying : libRmath-4.3.3-2.fc39.x86_64 141/166 Verifying : libRmath-devel-4.3.3-2.fc39.x86_64 142/166 Verifying : libX11-1.8.9-1.fc39.x86_64 143/166 Verifying : libX11-common-1.8.9-1.fc39.noarch 144/166 Verifying : libX11-devel-1.8.9-1.fc39.x86_64 145/166 Verifying : libX11-xcb-1.8.9-1.fc39.x86_64 146/166 Verifying : libblkid-devel-2.39.4-1.fc39.x86_64 147/166 Verifying : libgfortran-13.3.1-1.fc39.x86_64 148/166 Verifying : libmount-devel-2.39.4-1.fc39.x86_64 149/166 Verifying : libquadmath-13.3.1-1.fc39.x86_64 150/166 Verifying : libquadmath-devel-13.3.1-1.fc39.x86_64 151/166 Verifying : libstdc++-devel-13.3.1-1.fc39.x86_64 152/166 Verifying : libtirpc-devel-1.3.5-0.fc39.x86_64 153/166 Verifying : nspr-4.35.0-22.fc39.x86_64 154/166 Verifying : nss-3.103.0-1.fc39.x86_64 155/166 Verifying : nss-softokn-3.103.0-1.fc39.x86_64 156/166 Verifying : nss-softokn-freebl-3.103.0-1.fc39.x86_64 157/166 Verifying : nss-sysinit-3.103.0-1.fc39.x86_64 158/166 Verifying : nss-util-3.103.0-1.fc39.x86_64 159/166 Verifying : python-pip-wheel-23.2.1-2.fc39.noarch 160/166 Verifying : python3-3.12.5-1.fc39.x86_64 161/166 Verifying : python3-libs-3.12.5-1.fc39.x86_64 162/166 Verifying : python3-setuptools-67.7.2-8.fc39.noarch 163/166 Verifying : sysprof-capture-devel-45.1-1.fc39.x86_64 164/166 Verifying : tzdata-2024a-2.fc39.noarch 165/166 Verifying : tzdata-java-2024a-2.fc39.noarch 166/166 Installed products updated. Installed: R-CRAN-BH-1.84.0.0-1.fc39.copr6880886.noarch R-CRAN-MASS-7.3.60.0.1-1.fc39.copr6895092.x86_64 R-CRAN-Matrix-1.6.5-1.fc39.copr6886765.x86_64 R-CRAN-Rcpp-1.0.13-1.fc39.copr7745410.x86_64 R-CRAN-RcppArmadillo-14.0.2.1-1.fc39.copr8016517.x86_64 R-CRAN-RcppProgress-0.4.2-3.fc39.copr6279637.noarch R-CRAN-bigmemory-4.6.4-1.fc39.copr6877563.x86_64 R-CRAN-bigmemory.sri-0.1.8-1.fc39.copr6880887.noarch R-CRAN-jsonlite-1.8.8-1.fc39.copr6724909.x86_64 R-CRAN-lattice-0.22.6-1.fc39.copr7307082.x86_64 R-CRAN-uuid-1.2.1-1.fc39.copr7803040.x86_64 R-core-4.3.3-2.fc39.x86_64 R-core-devel-4.3.3-2.fc39.x86_64 R-devel-4.3.3-2.fc39.x86_64 R-java-4.3.3-2.fc39.x86_64 R-java-devel-4.3.3-2.fc39.x86_64 R-littler-0.3.19-1.fc39.x86_64 R-rpm-macros-1.2.1-7.fc39.noarch abattis-cantarell-vf-fonts-0.301-10.fc39.noarch alsa-lib-1.2.12-1.fc39.x86_64 annobin-docs-12.60-1.fc39.noarch annobin-plugin-gcc-12.60-1.fc39.x86_64 avahi-libs-0.8-24.fc39.x86_64 brotli-1.1.0-1.fc39.x86_64 brotli-devel-1.1.0-1.fc39.x86_64 bzip2-devel-1.0.8-16.fc39.x86_64 cairo-1.18.0-1.fc39.x86_64 cmake-filesystem-3.27.7-1.fc39.x86_64 copy-jdk-configs-4.1-3.fc39.noarch cpp-13.3.1-1.fc39.x86_64 crypto-policies-scripts-20231204-1.git1e3a2e4.fc39.noarch cups-libs-1:2.4.10-6.fc39.x86_64 dbus-libs-1:1.14.10-1.fc39.x86_64 default-fonts-core-sans-4.0-9.fc39.noarch desktop-file-utils-0.26-9.fc39.x86_64 emacs-filesystem-1:29.4-2.fc39.noarch expat-2.6.2-1.fc39.x86_64 flexiblas-3.4.4-1.fc39.x86_64 flexiblas-devel-3.4.4-1.fc39.x86_64 flexiblas-netlib-3.4.4-1.fc39.x86_64 flexiblas-netlib64-3.4.4-1.fc39.x86_64 flexiblas-openblas-openmp-3.4.4-1.fc39.x86_64 flexiblas-openblas-openmp64-3.4.4-1.fc39.x86_64 fontconfig-2.14.2-6.fc39.x86_64 fontconfig-devel-2.14.2-6.fc39.x86_64 fonts-filesystem-1:2.0.5-12.fc39.noarch freetype-2.13.1-2.fc39.x86_64 freetype-devel-2.13.1-2.fc39.x86_64 fribidi-1.0.13-2.fc39.x86_64 gc-8.2.2-4.fc39.x86_64 gcc-13.3.1-1.fc39.x86_64 gcc-c++-13.3.1-1.fc39.x86_64 gcc-gfortran-13.3.1-1.fc39.x86_64 gcc-plugin-annobin-13.3.1-1.fc39.x86_64 gettext-0.22-2.fc39.x86_64 gettext-envsubst-0.22-2.fc39.x86_64 gettext-libs-0.22-2.fc39.x86_64 gettext-runtime-0.22-2.fc39.x86_64 glib2-2.78.6-1.fc39.x86_64 glib2-devel-2.78.6-1.fc39.x86_64 glibc-devel-2.38-18.fc39.x86_64 glibc-headers-x86-2.38-18.fc39.noarch gnutls-3.8.6-1.fc39.x86_64 google-noto-fonts-common-20240101-1.fc39.noarch google-noto-sans-vf-fonts-20240101-1.fc39.noarch graphite2-1.3.14-12.fc39.x86_64 graphite2-devel-1.3.14-12.fc39.x86_64 guile22-2.2.7-9.fc39.x86_64 harfbuzz-8.2.1-2.fc39.x86_64 harfbuzz-devel-8.2.1-2.fc39.x86_64 harfbuzz-icu-8.2.1-2.fc39.x86_64 java-21-openjdk-1:21.0.4.0.7-2.fc39.x86_64 java-21-openjdk-devel-1:21.0.4.0.7-2.fc39.x86_64 java-21-openjdk-headless-1:21.0.4.0.7-2.fc39.x86_64 javapackages-filesystem-6.1.0-10.fc39.noarch jbigkit-libs-2.1-26.fc39.x86_64 kernel-headers-6.10.3-200.fc39.x86_64 libICE-1.0.10-11.fc39.x86_64 libRmath-4.3.3-2.fc39.x86_64 libRmath-devel-4.3.3-2.fc39.x86_64 libSM-1.2.3-13.fc39.x86_64 libX11-1.8.9-1.fc39.x86_64 libX11-common-1.8.9-1.fc39.noarch libX11-devel-1.8.9-1.fc39.x86_64 libX11-xcb-1.8.9-1.fc39.x86_64 libXau-1.0.11-3.fc39.x86_64 libXau-devel-1.0.11-3.fc39.x86_64 libXcomposite-0.4.5-10.fc39.x86_64 libXext-1.3.5-3.fc39.x86_64 libXft-2.3.8-3.fc39.x86_64 libXft-devel-2.3.8-3.fc39.x86_64 libXi-1.8.1-2.fc39.x86_64 libXmu-1.1.4-3.fc39.x86_64 libXrender-0.9.11-3.fc39.x86_64 libXrender-devel-0.9.11-3.fc39.x86_64 libXt-1.2.1-5.fc39.x86_64 libXtst-1.2.4-3.fc39.x86_64 libb2-0.98.1-9.fc39.x86_64 libblkid-devel-2.39.4-1.fc39.x86_64 libdatrie-0.2.13-7.fc39.x86_64 libffi-devel-3.4.4-4.fc39.x86_64 libfontenc-1.1.6-3.fc39.x86_64 libgfortran-13.3.1-1.fc39.x86_64 libicu-73.2-2.fc39.x86_64 libicu-devel-73.2-2.fc39.x86_64 libjpeg-turbo-2.1.4-3.fc39.x86_64 liblerc-4.0.0-4.fc39.x86_64 libmount-devel-2.39.4-1.fc39.x86_64 libmpc-1.3.1-3.fc39.x86_64 libpng-2:1.6.37-15.fc39.x86_64 libpng-devel-2:1.6.37-15.fc39.x86_64 libquadmath-13.3.1-1.fc39.x86_64 libquadmath-devel-13.3.1-1.fc39.x86_64 libselinux-devel-3.5-5.fc39.x86_64 libsepol-devel-3.5-2.fc39.x86_64 libstdc++-devel-13.3.1-1.fc39.x86_64 libthai-0.1.29-6.fc39.x86_64 libtiff-4.4.0-8.fc39.x86_64 libtirpc-devel-1.3.5-0.fc39.x86_64 libwebp-1.3.2-2.fc39.x86_64 libxcb-1.13.1-12.fc39.x86_64 libxcb-devel-1.13.1-12.fc39.x86_64 libxcrypt-devel-4.4.36-2.fc39.x86_64 libxml2-devel-2.10.4-3.fc39.x86_64 lksctp-tools-1.0.19-4.fc39.x86_64 lua-5.4.6-3.fc39.x86_64 lua-posix-36.2.1-3.fc39.x86_64 make-1:4.4.1-2.fc39.x86_64 mkfontscale-1.2.2-4.fc39.x86_64 mpdecimal-2.5.1-7.fc39.x86_64 nettle-3.9.1-2.fc39.x86_64 nspr-4.35.0-22.fc39.x86_64 nss-3.103.0-1.fc39.x86_64 nss-softokn-3.103.0-1.fc39.x86_64 nss-softokn-freebl-3.103.0-1.fc39.x86_64 nss-sysinit-3.103.0-1.fc39.x86_64 nss-util-3.103.0-1.fc39.x86_64 openblas-0.3.21-6.fc39.x86_64 openblas-openmp-0.3.21-6.fc39.x86_64 openblas-openmp64-0.3.21-6.fc39.x86_64 pango-1.51.0-1.fc39.x86_64 pcre2-devel-10.42-1.fc39.2.x86_64 pcre2-utf16-10.42-1.fc39.2.x86_64 pcre2-utf32-10.42-1.fc39.2.x86_64 pixman-0.42.2-2.fc39.x86_64 python-pip-wheel-23.2.1-2.fc39.noarch python3-3.12.5-1.fc39.x86_64 python3-libs-3.12.5-1.fc39.x86_64 python3-setuptools-67.7.2-8.fc39.noarch sysprof-capture-devel-45.1-1.fc39.x86_64 tcl-1:8.6.12-5.fc39.x86_64 tcl-devel-1:8.6.12-5.fc39.x86_64 tk-1:8.6.12-5.fc39.x86_64 tk-devel-1:8.6.12-5.fc39.x86_64 tre-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 tre-common-0.8.0-41.20140228gitc2f5d13.fc39.noarch tre-devel-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 ttmkfdir-3.0.9-69.fc39.x86_64 tzdata-2024a-2.fc39.noarch tzdata-java-2024a-2.fc39.noarch xdg-utils-1.1.3-15.fc39.noarch xml-common-0.6.3-61.fc39.noarch xorg-x11-fonts-Type1-7.5-36.fc39.noarch xorg-x11-proto-devel-2023.2-2.fc39.noarch xz-devel-5.4.4-1.fc39.x86_64 zlib-devel-1.2.13-4.fc39.x86_64 Complete! Finish: build setup for R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.src.rpm Start: rpmbuild R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.d50xiW + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf simer + /usr/bin/mkdir -p simer + cd simer + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/simer_0.9.0.5.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + rm -rf /builddir/build/BUILD/simer-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/simer-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d simer/src ']' + find simer/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';' + '[' -d simer/src ']' + find simer/src/Makevars simer/src/Makevars.win -type f -exec sed -i s@-g0@@g '{}' ';' + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.weXfvV + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd simer + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.SntDja + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.x86_64 ++ dirname /builddir/build/BUILDROOT/R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd simer + mkdir -p /builddir/build/BUILDROOT/R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.x86_64/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.x86_64/usr/local/lib/R/library simer * installing *source* package ‘simer’ ... ** package ‘simer’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 13.3.1 20240522 (Red Hat 13.3.1-1)’ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppProgress/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/bigmemory/include' -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppProgress/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/bigmemory/include' -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c data_converter.cpp -o data_converter.o In file included from /usr/local/lib/R/library/BH/include/boost/bind/mem_fn.hpp:25, from /usr/local/lib/R/library/BH/include/boost/bind/bind.hpp:26, from /usr/local/lib/R/library/BH/include/boost/bind.hpp:29, from data_converter.cpp:2: /usr/local/lib/R/library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 48 | template T * get_pointer(std::auto_ptr const& p) | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /usr/local/lib/R/library/BH/include/boost/config/no_tr1/memory.hpp:21, from /usr/local/lib/R/library/BH/include/boost/get_pointer.hpp:14: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /usr/local/lib/R/library/BH/include/boost/bind/detail/requires_cxx11.hpp:9, from /usr/local/lib/R/library/BH/include/boost/bind/bind.hpp:24: /usr/local/lib/R/library/BH/include/boost/config/pragma_message.hpp:24:34: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) | ^~~~~~~ /usr/local/lib/R/library/BH/include/boost/bind.hpp:36:1: note: in expansion of macro ‘BOOST_PRAGMA_MESSAGE’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /usr/local/lib/R/library/BH/include/boost/mpl/arg.hpp:25, from /usr/local/lib/R/library/BH/include/boost/mpl/placeholders.hpp:24, from /usr/local/lib/R/library/BH/include/boost/iterator/iterator_categories.hpp:16, from /usr/local/lib/R/library/BH/include/boost/iterator/iterator_facade.hpp:13, from /usr/local/lib/R/library/BH/include/boost/range/iterator_range_core.hpp:27, from /usr/local/lib/R/library/BH/include/boost/range/iterator_range.hpp:13, from /usr/local/lib/R/library/BH/include/boost/range/as_literal.hpp:18, from /usr/local/lib/R/library/BH/include/boost/algorithm/string/trim.hpp:19, from /usr/local/lib/R/library/BH/include/boost/algorithm/string.hpp:19, from data_converter.cpp:3: /usr/local/lib/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /usr/local/lib/R/library/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /usr/local/lib/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /usr/local/lib/R/library/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/local/lib/R/library/BH/include/boost/shared_ptr.hpp:17, from /usr/local/lib/R/library/bigmemory/include/bigmemory/BigMatrix.h:10, from data_converter.cpp:4: /usr/local/lib/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 361 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R > | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 508 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 604 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 613 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)’: /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 615 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ data_converter.cpp: In instantiation of ‘void read_bfile(std::string, Rcpp::XPtr, long int, double, int, bool) [with T = char; std::string = std::__cxx11::basic_string]’: data_converter.cpp:166:28: required from here data_converter.cpp:131:10: warning: variable ‘n_bytes_read’ set but not used [-Wunused-but-set-variable] 131 | size_t n_bytes_read = static_cast(fread(buffer, 1, 3, fin)); | ^~~~~~~~~~~~ data_converter.cpp: In instantiation of ‘void read_bfile(std::string, Rcpp::XPtr, long int, double, int, bool) [with T = short int; std::string = std::__cxx11::basic_string]’: data_converter.cpp:168:29: required from here data_converter.cpp:131:10: warning: variable ‘n_bytes_read’ set but not used [-Wunused-but-set-variable] data_converter.cpp: In instantiation of ‘void read_bfile(std::string, Rcpp::XPtr, long int, double, int, bool) [with T = int; std::string = std::__cxx11::basic_string]’: data_converter.cpp:170:27: required from here data_converter.cpp:131:10: warning: variable ‘n_bytes_read’ set but not used [-Wunused-but-set-variable] data_converter.cpp: In instantiation of ‘void read_bfile(std::string, Rcpp::XPtr, long int, double, int, bool) [with T = double; std::string = std::__cxx11::basic_string]’: data_converter.cpp:172:30: required from here data_converter.cpp:131:10: warning: variable ‘n_bytes_read’ set but not used [-Wunused-but-set-variable] g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppProgress/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/bigmemory/include' -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c emma.cpp -o emma.o In file included from /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/local/lib/R/library/BH/include/boost/shared_ptr.hpp:17, from /usr/local/lib/R/library/bigmemory/include/bigmemory/BigMatrix.h:10, from emma.cpp:2: /usr/local/lib/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 361 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /usr/local/lib/R/library/RcppArmadillo/include/armadillo:38, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:58, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from emma.cpp:1: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R > | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 508 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 604 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 613 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)’: /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 615 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppProgress/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/bigmemory/include' -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c genotype.cpp -o genotype.o In file included from /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/local/lib/R/library/BH/include/boost/shared_ptr.hpp:17, from /usr/local/lib/R/library/bigmemory/include/bigmemory/BigMatrix.h:10, from genotype.cpp:3: /usr/local/lib/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 361 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /usr/local/lib/R/library/RcppArmadillo/include/armadillo:38, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:58, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from genotype.cpp:1: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R > | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 508 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 604 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 613 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)’: /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 615 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ genotype.cpp: In instantiation of ‘Rcpp::NumericVector FilterGeno(Rcpp::XPtr, double, Rcpp::IntegerVector, Rcpp::IntegerVector, int) [with T = char; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::IntegerVector = Rcpp::Vector<13>]’: genotype.cpp:75:28: required from here genotype.cpp:61:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 61 | for (j = 0; j < colIdx.size(); j++) { | ^ genotype.cpp:62:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 62 | for (i = 0; i < rowIdx.size(); i++) { | ~~^~~~~~~~~~~~~~~ genotype.cpp: In instantiation of ‘Rcpp::NumericVector FilterGeno(Rcpp::XPtr, double, Rcpp::IntegerVector, Rcpp::IntegerVector, int) [with T = short int; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::IntegerVector = Rcpp::Vector<13>]’: genotype.cpp:77:29: required from here genotype.cpp:61:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 61 | for (j = 0; j < colIdx.size(); j++) { | ^ genotype.cpp:62:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 62 | for (i = 0; i < rowIdx.size(); i++) { | ~~^~~~~~~~~~~~~~~ genotype.cpp: In instantiation of ‘Rcpp::NumericVector FilterGeno(Rcpp::XPtr, double, Rcpp::IntegerVector, Rcpp::IntegerVector, int) [with T = int; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::IntegerVector = Rcpp::Vector<13>]’: genotype.cpp:79:27: required from here genotype.cpp:61:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 61 | for (j = 0; j < colIdx.size(); j++) { | ^ genotype.cpp:62:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 62 | for (i = 0; i < rowIdx.size(); i++) { | ~~^~~~~~~~~~~~~~~ genotype.cpp: In instantiation of ‘Rcpp::NumericVector FilterGeno(Rcpp::XPtr, double, Rcpp::IntegerVector, Rcpp::IntegerVector, int) [with T = double; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::IntegerVector = Rcpp::Vector<13>]’: genotype.cpp:81:30: required from here genotype.cpp:61:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 61 | for (j = 0; j < colIdx.size(); j++) { | ^ genotype.cpp:62:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 62 | for (i = 0; i < rowIdx.size(); i++) { | ~~^~~~~~~~~~~~~~~ genotype.cpp: In instantiation of ‘arma::mat CalGenoFreq(Rcpp::XPtr, double, Rcpp::IntegerVector, Rcpp::IntegerVector, int) [with T = char; arma::mat = arma::Mat; Rcpp::IntegerVector = Rcpp::Vector<13>]’: genotype.cpp:117:29: required from here genotype.cpp:97:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 97 | for (i = 0; i < rowIdx.size(); i++) { | ^ genotype.cpp:98:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 98 | for (j = 0; j < colIdx.size(); j++) { | ~~^~~~~~~~~~~~~~~ genotype.cpp: In instantiation of ‘arma::mat CalGenoFreq(Rcpp::XPtr, double, Rcpp::IntegerVector, Rcpp::IntegerVector, int) [with T = short int; arma::mat = arma::Mat; Rcpp::IntegerVector = Rcpp::Vector<13>]’: genotype.cpp:119:30: required from here genotype.cpp:97:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 97 | for (i = 0; i < rowIdx.size(); i++) { | ^ genotype.cpp:98:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 98 | for (j = 0; j < colIdx.size(); j++) { | ~~^~~~~~~~~~~~~~~ genotype.cpp: In instantiation of ‘arma::mat CalGenoFreq(Rcpp::XPtr, double, Rcpp::IntegerVector, Rcpp::IntegerVector, int) [with T = int; arma::mat = arma::Mat; Rcpp::IntegerVector = Rcpp::Vector<13>]’: genotype.cpp:121:28: required from here genotype.cpp:97:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 97 | for (i = 0; i < rowIdx.size(); i++) { | ^ genotype.cpp:98:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 98 | for (j = 0; j < colIdx.size(); j++) { | ~~^~~~~~~~~~~~~~~ genotype.cpp: In instantiation of ‘arma::mat CalGenoFreq(Rcpp::XPtr, double, Rcpp::IntegerVector, Rcpp::IntegerVector, int) [with T = double; arma::mat = arma::Mat; Rcpp::IntegerVector = Rcpp::Vector<13>]’: genotype.cpp:123:31: required from here genotype.cpp:97:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 97 | for (i = 0; i < rowIdx.size(); i++) { | ^ genotype.cpp:98:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 98 | for (j = 0; j < colIdx.size(); j++) { | ~~^~~~~~~~~~~~~~~ genotype.cpp: In instantiation of ‘void Mat2BigMat(Rcpp::XPtr, Rcpp::IntegerMatrix, Rcpp::Nullable >, int, int) [with T = char; Rcpp::IntegerMatrix = Rcpp::Matrix<13>]’: genotype.cpp:399:28: required from here genotype.cpp:374:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 374 | if (m != pMat->nrow()) { | ~~^~~~~~~~~~~~~~~ genotype.cpp:377:14: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 377 | if (op + n > pMat->ncol()) { | ~~~~~~~^~~~~~~~~~~~~~ genotype.cpp: In instantiation of ‘void Mat2BigMat(Rcpp::XPtr, Rcpp::IntegerMatrix, Rcpp::Nullable >, int, int) [with T = short int; Rcpp::IntegerMatrix = Rcpp::Matrix<13>]’: genotype.cpp:401:29: required from here genotype.cpp:374:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 374 | if (m != pMat->nrow()) { | ~~^~~~~~~~~~~~~~~ genotype.cpp:377:14: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 377 | if (op + n > pMat->ncol()) { | ~~~~~~~^~~~~~~~~~~~~~ genotype.cpp: In instantiation of ‘void Mat2BigMat(Rcpp::XPtr, Rcpp::IntegerMatrix, Rcpp::Nullable >, int, int) [with T = int; Rcpp::IntegerMatrix = Rcpp::Matrix<13>]’: genotype.cpp:403:27: required from here genotype.cpp:374:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 374 | if (m != pMat->nrow()) { | ~~^~~~~~~~~~~~~~~ genotype.cpp:377:14: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 377 | if (op + n > pMat->ncol()) { | ~~~~~~~^~~~~~~~~~~~~~ genotype.cpp: In instantiation of ‘void Mat2BigMat(Rcpp::XPtr, Rcpp::IntegerMatrix, Rcpp::Nullable >, int, int) [with T = double; Rcpp::IntegerMatrix = Rcpp::Matrix<13>]’: genotype.cpp:405:30: required from here genotype.cpp:374:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 374 | if (m != pMat->nrow()) { | ~~^~~~~~~~~~~~~~~ genotype.cpp:377:14: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 377 | if (op + n > pMat->ncol()) { | ~~~~~~~^~~~~~~~~~~~~~ genotype.cpp: In instantiation of ‘void BigMat2BigMat(Rcpp::XPtr, Rcpp::XPtr, Rcpp::Nullable >, int, int) [with T = char]’: genotype.cpp:462:31: required from here genotype.cpp:428:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 428 | if (m != pMat->nrow()) { | ~~^~~~~~~~~~~~~~~ genotype.cpp:431:14: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 431 | if (op + n > pMat->ncol()) { | ~~~~~~~^~~~~~~~~~~~~~ genotype.cpp:440:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 440 | for (j = 0; j < pmat->ncol(); j++) { | ^ genotype.cpp: In instantiation of ‘void BigMat2BigMat(Rcpp::XPtr, Rcpp::XPtr, Rcpp::Nullable >, int, int) [with T = short int]’: genotype.cpp:464:32: required from here genotype.cpp:428:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 428 | if (m != pMat->nrow()) { | ~~^~~~~~~~~~~~~~~ genotype.cpp:431:14: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 431 | if (op + n > pMat->ncol()) { | ~~~~~~~^~~~~~~~~~~~~~ genotype.cpp:440:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 440 | for (j = 0; j < pmat->ncol(); j++) { | ^ genotype.cpp: In instantiation of ‘void BigMat2BigMat(Rcpp::XPtr, Rcpp::XPtr, Rcpp::Nullable >, int, int) [with T = int]’: genotype.cpp:466:30: required from here genotype.cpp:428:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 428 | if (m != pMat->nrow()) { | ~~^~~~~~~~~~~~~~~ genotype.cpp:431:14: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 431 | if (op + n > pMat->ncol()) { | ~~~~~~~^~~~~~~~~~~~~~ genotype.cpp:440:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 440 | for (j = 0; j < pmat->ncol(); j++) { | ^ genotype.cpp: In instantiation of ‘void BigMat2BigMat(Rcpp::XPtr, Rcpp::XPtr, Rcpp::Nullable >, int, int) [with T = double]’: genotype.cpp:468:33: required from here genotype.cpp:428:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 428 | if (m != pMat->nrow()) { | ~~^~~~~~~~~~~~~~~ genotype.cpp:431:14: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 431 | if (op + n > pMat->ncol()) { | ~~~~~~~^~~~~~~~~~~~~~ genotype.cpp:440:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 440 | for (j = 0; j < pmat->ncol(); j++) { | ^ genotype.cpp: In instantiation of ‘void GenoMixer(Rcpp::XPtr, Rcpp::XPtr, Rcpp::IntegerVector, Rcpp::IntegerVector, int, int, int) [with T = char; Rcpp::IntegerVector = Rcpp::Vector<13>]’: genotype.cpp:546:27: required from here genotype.cpp:490:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 490 | if (m != pMat->nrow()) { | ~~^~~~~~~~~~~~~~~ genotype.cpp:493:14: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 493 | if (op + n > pMat->ncol()) { | ~~~~~~~^~~~~~~~~~~~~~ genotype.cpp:507:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 507 | for (i = 0; i < nBlock; i++) { | ~~^~~~~~~~ genotype.cpp:512:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 512 | for (i = 1; i < nBlock; i++) { | ~~^~~~~~~~ genotype.cpp:518:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 518 | for (j = 0; j < pmat->ncol(); j++) { | ^ genotype.cpp:525:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 525 | for (k = 0; k < nBlock; k++) { | ^~~~~~ genotype.cpp: In instantiation of ‘void GenoMixer(Rcpp::XPtr, Rcpp::XPtr, Rcpp::IntegerVector, Rcpp::IntegerVector, int, int, int) [with T = short int; Rcpp::IntegerVector = Rcpp::Vector<13>]’: genotype.cpp:548:28: required from here genotype.cpp:490:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 490 | if (m != pMat->nrow()) { | ~~^~~~~~~~~~~~~~~ genotype.cpp:493:14: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 493 | if (op + n > pMat->ncol()) { | ~~~~~~~^~~~~~~~~~~~~~ genotype.cpp:507:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 507 | for (i = 0; i < nBlock; i++) { | ~~^~~~~~~~ genotype.cpp:512:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 512 | for (i = 1; i < nBlock; i++) { | ~~^~~~~~~~ genotype.cpp:518:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 518 | for (j = 0; j < pmat->ncol(); j++) { | ^ genotype.cpp:525:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 525 | for (k = 0; k < nBlock; k++) { | ^~~~~~ genotype.cpp: In instantiation of ‘void GenoMixer(Rcpp::XPtr, Rcpp::XPtr, Rcpp::IntegerVector, Rcpp::IntegerVector, int, int, int) [with T = int; Rcpp::IntegerVector = Rcpp::Vector<13>]’: genotype.cpp:550:26: required from here genotype.cpp:490:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 490 | if (m != pMat->nrow()) { | ~~^~~~~~~~~~~~~~~ genotype.cpp:493:14: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 493 | if (op + n > pMat->ncol()) { | ~~~~~~~^~~~~~~~~~~~~~ genotype.cpp:507:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 507 | for (i = 0; i < nBlock; i++) { | ~~^~~~~~~~ genotype.cpp:512:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 512 | for (i = 1; i < nBlock; i++) { | ~~^~~~~~~~ genotype.cpp:518:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 518 | for (j = 0; j < pmat->ncol(); j++) { | ^ genotype.cpp:525:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 525 | for (k = 0; k < nBlock; k++) { | ^~~~~~ genotype.cpp: In instantiation of ‘void GenoMixer(Rcpp::XPtr, Rcpp::XPtr, Rcpp::IntegerVector, Rcpp::IntegerVector, int, int, int) [with T = double; Rcpp::IntegerVector = Rcpp::Vector<13>]’: genotype.cpp:552:29: required from here genotype.cpp:490:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 490 | if (m != pMat->nrow()) { | ~~^~~~~~~~~~~~~~~ genotype.cpp:493:14: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 493 | if (op + n > pMat->ncol()) { | ~~~~~~~^~~~~~~~~~~~~~ genotype.cpp:507:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 507 | for (i = 0; i < nBlock; i++) { | ~~^~~~~~~~ genotype.cpp:512:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 512 | for (i = 1; i < nBlock; i++) { | ~~^~~~~~~~ genotype.cpp:518:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘index_type’ {aka ‘long int’} [-Wsign-compare] 518 | for (j = 0; j < pmat->ncol(); j++) { | ^ genotype.cpp:525:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 525 | for (k = 0; k < nBlock; k++) { | ^~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppProgress/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/bigmemory/include' -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c impute.cpp -o impute.o In file included from /usr/local/lib/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /usr/local/lib/R/library/BH/include/boost/mpl/arg.hpp:25, from /usr/local/lib/R/library/BH/include/boost/mpl/placeholders.hpp:24, from /usr/local/lib/R/library/BH/include/boost/iterator/iterator_categories.hpp:16, from /usr/local/lib/R/library/BH/include/boost/iterator/iterator_facade.hpp:13, from /usr/local/lib/R/library/BH/include/boost/range/iterator_range_core.hpp:27, from /usr/local/lib/R/library/BH/include/boost/range/iterator_range.hpp:13, from /usr/local/lib/R/library/BH/include/boost/range/as_literal.hpp:18, from /usr/local/lib/R/library/BH/include/boost/algorithm/string/trim.hpp:19, from /usr/local/lib/R/library/BH/include/boost/algorithm/string.hpp:19, from impute.cpp:2: /usr/local/lib/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /usr/local/lib/R/library/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /usr/local/lib/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /usr/local/lib/R/library/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /usr/local/lib/R/library/BH/include/boost/bind/mem_fn.hpp:25, from /usr/local/lib/R/library/BH/include/boost/mem_fn.hpp:22, from /usr/local/lib/R/library/BH/include/boost/function/detail/prologue.hpp:19, from /usr/local/lib/R/library/BH/include/boost/function.hpp:30, from /usr/local/lib/R/library/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18, from /usr/local/lib/R/library/BH/include/boost/algorithm/string/find_iterator.hpp:24, from /usr/local/lib/R/library/BH/include/boost/algorithm/string/iter_find.hpp:27, from /usr/local/lib/R/library/BH/include/boost/algorithm/string/split.hpp:16, from /usr/local/lib/R/library/BH/include/boost/algorithm/string.hpp:23: /usr/local/lib/R/library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 48 | template T * get_pointer(std::auto_ptr const& p) | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /usr/local/lib/R/library/BH/include/boost/function/function_base.hpp:34, from /usr/local/lib/R/library/BH/include/boost/function/detail/prologue.hpp:18: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/local/lib/R/library/BH/include/boost/shared_ptr.hpp:17, from /usr/local/lib/R/library/bigmemory/include/bigmemory/BigMatrix.h:10, from impute.cpp:3: /usr/local/lib/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 361 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R > | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 508 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 604 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 613 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)’: /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 615 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ impute.cpp: In function ‘bool hasNABed(std::string, int, long int, int, bool)’: impute.cpp:101:43: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 101 | for (size_t x = 0; x < 4 && (c + x) < ind; x++) { | ~~~~~~~~^~~~~ impute.cpp:97:14: warning: unused variable ‘r’ [-Wunused-variable] 97 | size_t r = (block_start + j) / n; | ^ impute.cpp:82:10: warning: variable ‘n_bytes_read’ set but not used [-Wunused-but-set-variable] 82 | size_t n_bytes_read = static_cast(fread(buffer, 1, 3, fin)); | ^~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppProgress/include' -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/bigmemory/include' -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pedigree.cpp -o pedigree.o In file included from /usr/local/lib/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /usr/local/lib/R/library/BH/include/boost/mpl/arg.hpp:25, from /usr/local/lib/R/library/BH/include/boost/mpl/placeholders.hpp:24, from /usr/local/lib/R/library/BH/include/boost/iterator/iterator_categories.hpp:16, from /usr/local/lib/R/library/BH/include/boost/iterator/iterator_facade.hpp:13, from /usr/local/lib/R/library/BH/include/boost/range/iterator_range_core.hpp:27, from /usr/local/lib/R/library/BH/include/boost/range/iterator_range.hpp:13, from /usr/local/lib/R/library/BH/include/boost/range/as_literal.hpp:18, from /usr/local/lib/R/library/BH/include/boost/algorithm/string/trim.hpp:19, from /usr/local/lib/R/library/BH/include/boost/algorithm/string.hpp:19, from pedigree.cpp:2: /usr/local/lib/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /usr/local/lib/R/library/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /usr/local/lib/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /usr/local/lib/R/library/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /usr/local/lib/R/library/BH/include/boost/bind/mem_fn.hpp:25, from /usr/local/lib/R/library/BH/include/boost/mem_fn.hpp:22, from /usr/local/lib/R/library/BH/include/boost/function/detail/prologue.hpp:19, from /usr/local/lib/R/library/BH/include/boost/function.hpp:30, from /usr/local/lib/R/library/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18, from /usr/local/lib/R/library/BH/include/boost/algorithm/string/find_iterator.hpp:24, from /usr/local/lib/R/library/BH/include/boost/algorithm/string/iter_find.hpp:27, from /usr/local/lib/R/library/BH/include/boost/algorithm/string/split.hpp:16, from /usr/local/lib/R/library/BH/include/boost/algorithm/string.hpp:23: /usr/local/lib/R/library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 48 | template T * get_pointer(std::auto_ptr const& p) | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /usr/local/lib/R/library/RcppArmadillo/include/armadillo:38, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:58, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from pedigree.cpp:1: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:18, from /usr/local/lib/R/library/BH/include/boost/shared_ptr.hpp:17, from /usr/local/lib/R/library/bigmemory/include/bigmemory/BigMatrix.h:10, from pedigree.cpp:3: /usr/local/lib/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 361 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R > | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 508 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 604 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 613 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)’: /usr/local/lib/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 615 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ pedigree.cpp: In instantiation of ‘Rcpp::DataFrame PedigreeCorrector(Rcpp::XPtr, Rcpp::StringVector, Rcpp::DataFrame, Rcpp::Nullable >, Rcpp::Nullable >, double, double, Rcpp::Nullable >, int, bool) [with T = char; Rcpp::DataFrame = Rcpp::DataFrame_Impl; Rcpp::StringVector = Rcpp::Vector<16>]’: pedigree.cpp:239:35: required from here pedigree.cpp:84:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 84 | for (size_t i = 0; i < candSirIDUse.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ pedigree.cpp:89:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 89 | for (size_t i = 0; i < candDamIDUse.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ pedigree.cpp: In instantiation of ‘Rcpp::DataFrame PedigreeCorrector(Rcpp::XPtr, Rcpp::StringVector, Rcpp::DataFrame, Rcpp::Nullable >, Rcpp::Nullable >, double, double, Rcpp::Nullable >, int, bool) [with T = short int; Rcpp::DataFrame = Rcpp::DataFrame_Impl; Rcpp::StringVector = Rcpp::Vector<16>]’: pedigree.cpp:241:36: required from here pedigree.cpp:84:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 84 | for (size_t i = 0; i < candSirIDUse.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ pedigree.cpp:89:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 89 | for (size_t i = 0; i < candDamIDUse.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ pedigree.cpp: In instantiation of ‘Rcpp::DataFrame PedigreeCorrector(Rcpp::XPtr, Rcpp::StringVector, Rcpp::DataFrame, Rcpp::Nullable >, Rcpp::Nullable >, double, double, Rcpp::Nullable >, int, bool) [with T = int; Rcpp::DataFrame = Rcpp::DataFrame_Impl; Rcpp::StringVector = Rcpp::Vector<16>]’: pedigree.cpp:243:34: required from here pedigree.cpp:84:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 84 | for (size_t i = 0; i < candSirIDUse.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ pedigree.cpp:89:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 89 | for (size_t i = 0; i < candDamIDUse.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ pedigree.cpp: In instantiation of ‘Rcpp::DataFrame PedigreeCorrector(Rcpp::XPtr, Rcpp::StringVector, Rcpp::DataFrame, Rcpp::Nullable >, Rcpp::Nullable >, double, double, Rcpp::Nullable >, int, bool) [with T = double; Rcpp::DataFrame = Rcpp::DataFrame_Impl; Rcpp::StringVector = Rcpp::Vector<16>]’: pedigree.cpp:245:37: required from here pedigree.cpp:84:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 84 | for (size_t i = 0; i < candSirIDUse.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ pedigree.cpp:89:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 89 | for (size_t i = 0; i < candDamIDUse.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o simer.so RcppExports.o data_converter.o emma.o genotype.o impute.o pedigree.o -fopenmp -lflexiblas -lgfortran -lm -lquadmath -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILDROOT/R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.x86_64/usr/local/lib/R/library/00LOCK-simer/00new/simer/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘simer’ finding HTML links ... done GxG.network html IndPerGen html annotation html build.cov html cal.eff html checkEnv html format_time html generate.map html generate.pop html geno.cvt1 html geno.cvt2 html genotype html getfam html load_if_installed html logging.initialize html logging.log html logging.print html make_line html mate.2waycro html mate.3waycro html mate.4waycro html mate html mate.assort html mate.backcro html mate.clone html mate.dh html mate.disassort html mate.randexself html mate.randmate html mate.selfpol html mate.userped html mkl_env html param.annot html param.geno html param.global html param.pheno html param.reprod html param.sel html param.simer html paste_label html phenotype html pop.geno html pop.map html print_accomplished html print_bar html print_info html remove_bigmatrix html reproduces html rule_wrap html selects html simer.Data.Bfile2MVP html simer.Data.Env html simer.Data.Geno html simer.Data.Impute html simer.Data.Json html simer.Data.Kin html simer.Data.MVP2Bfile html simer.Data.MVP2MVP html simer.Data.Map html simer.Data.Ped html simer.Data.Pheno html simer.Data html simer.Data.SELIND html simer.Data.cHIBLUP html simer html simer.Version html write.file html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (simer) + test -d simer/src + cd simer/src + rm -f RcppExports.o data_converter.o emma.o genotype.o impute.o pedigree.o simer.so + rm -f /builddir/build/BUILDROOT/R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.x86_64/usr/local/lib/R/library/R.css + find /builddir/build/BUILDROOT/R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.x86_64/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILDROOT/R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.x86_64@@g '{}' ';' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.9.0.5-1.fc39.copr8032954 --unique-debug-suffix -0.9.0.5-1.fc39.copr8032954.x86_64 --unique-debug-src-base R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/simer find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.x86_64 95 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.x86_64 Provides: R-CRAN-simer = 0.9.0.5-1.fc39.copr8032954 R-CRAN-simer(x86-64) = 0.9.0.5-1.fc39.copr8032954 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: R-CRAN-simer-debugsource-0.9.0.5-1.fc39.copr8032954.x86_64 Provides: R-CRAN-simer-debugsource = 0.9.0.5-1.fc39.copr8032954 R-CRAN-simer-debugsource(x86-64) = 0.9.0.5-1.fc39.copr8032954 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-CRAN-simer-debuginfo-0.9.0.5-1.fc39.copr8032954.x86_64 Provides: R-CRAN-simer-debuginfo = 0.9.0.5-1.fc39.copr8032954 R-CRAN-simer-debuginfo(x86-64) = 0.9.0.5-1.fc39.copr8032954 debuginfo(build-id) = 2a232955d242455c180e634c58b0330477533c01 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-CRAN-simer-debugsource(x86-64) = 0.9.0.5-1.fc39.copr8032954 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.x86_64 Wrote: /builddir/build/RPMS/R-CRAN-simer-debuginfo-0.9.0.5-1.fc39.copr8032954.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-simer-debugsource-0.9.0.5-1.fc39.copr8032954.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.SO11mL + umask 022 + cd /builddir/build/BUILD + cd simer + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.rPTgNF + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/simer-SPECPARTS + rm -rf simer simer.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.src.rpm Finish: build phase for R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1726710030.752272/root/var/log/dnf.log /var/lib/mock/fedora-39-x86_64-1726710030.752272/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1726710030.752272/root/var/log/dnf.rpm.log INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-simer-0.9.0.5-1.fc39.copr8032954.src.rpm) Config(child) 1 minutes 51 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-CRAN-simer-debugsource", "epoch": null, "version": "0.9.0.5", "release": "1.fc39.copr8032954", "arch": "x86_64" }, { "name": "R-CRAN-simer-debuginfo", "epoch": null, "version": "0.9.0.5", "release": "1.fc39.copr8032954", "arch": "x86_64" }, { "name": "R-CRAN-simer", "epoch": null, "version": "0.9.0.5", "release": "1.fc39.copr8032954", "arch": "x86_64" }, { "name": "R-CRAN-simer", "epoch": null, "version": "0.9.0.5", "release": "1.fc39.copr8032954", "arch": "src" } ] } RPMResults finished