get_top_expressed_genes {gtexr}R Documentation

Get Top Expressed Genes

Description

Find top expressed genes for a specified tissue.

GTEx Portal API documentation

Usage

get_top_expressed_genes(
  tissueSiteDetailId,
  datasetId = "gtex_v8",
  filterMtGene = TRUE,
  page = 0,
  itemsPerPage = 250
)

Arguments

tissueSiteDetailId

String. The ID of the tissue of interest. Can be a GTEx specific ID (e.g. "Whole_Blood"; use get_tissue_site_detail() to see valid values) or an Ontology ID.

datasetId

String. Unique identifier of a dataset. Usually includes a data source and data release. Options: "gtex_v8", "gtex_snrnaseq_pilot".

filterMtGene

Logical. Exclude mitochondrial genes.

page

Integer (default = 0).

itemsPerPage

Integer (default = 250).

Value

A tibble.

See Also

Other Expression Data Endpoints: get_clustered_median_exon_expression(), get_clustered_median_gene_expression(), get_clustered_median_junction_expression(), get_clustered_median_transcript_expression(), get_expression_pca(), get_gene_expression(), get_median_exon_expression(), get_median_gene_expression(), get_median_junction_expression(), get_median_transcript_expression(), get_single_nucleus_gex(), get_single_nucleus_gex_summary()

Examples

## Not run: 
get_top_expressed_genes(tissueSiteDetailId = "Artery_Aorta")

## End(Not run)

[Package gtexr version 0.1.0 Index]