%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  bioinactivation
%global packver   1.2.3
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.2.3
Release:          1%{?dist}%{?buildtag}
Summary:          Mathematical Modelling of (Dynamic) Microbial Inactivation

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-MASS >= 7.3.39
BuildRequires:    R-graphics >= 3.1.3
BuildRequires:    R-stats >= 3.1.3
BuildRequires:    R-CRAN-ggplot2 >= 2.0.0
BuildRequires:    R-CRAN-FME >= 1.3.2
BuildRequires:    R-CRAN-deSolve >= 1.11
BuildRequires:    R-CRAN-dplyr >= 0.4.1
BuildRequires:    R-CRAN-purrr >= 0.3.2
BuildRequires:    R-CRAN-rlang >= 0.1.2
BuildRequires:    R-CRAN-lazyeval >= 0.1.10
Requires:         R-CRAN-MASS >= 7.3.39
Requires:         R-graphics >= 3.1.3
Requires:         R-stats >= 3.1.3
Requires:         R-CRAN-ggplot2 >= 2.0.0
Requires:         R-CRAN-FME >= 1.3.2
Requires:         R-CRAN-deSolve >= 1.11
Requires:         R-CRAN-dplyr >= 0.4.1
Requires:         R-CRAN-purrr >= 0.3.2
Requires:         R-CRAN-rlang >= 0.1.2
Requires:         R-CRAN-lazyeval >= 0.1.10

%description
Functions for modelling microbial inactivation under isothermal or dynamic
conditions. The calculations are based on several mathematical models
broadly used by the scientific community and industry. Functions enable to
make predictions for cases where the kinetic parameters are known. It also
implements functions for parameter estimation for isothermal and dynamic
conditions. The model fitting capabilities include an Adaptive Monte Carlo
method for a Bayesian approach to parameter estimation.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}