initial_abundance {epizootic}R Documentation

Initial house finch abundance

Description

This numeric matrix contains initial abundances of house finches in 1994 for the house finch conjunctivitis vignette. These abundances were themselves simulated using epizootic and do not represent empirical estimates of house finch abundance in 1994. The matrix has 6,355 columns, one for each population in the finch_region, and 8 rows, one for each combination of life cycle stage and disease compartment (row 1: susceptible juveniles, row 2: susceptible adults, row 3: juveniles infected for the first time, row 4: adults infected for the first time, row 5: recovered juveniles, row 6: recovered adults, row 7: re-infected juveniles, row 8: re-infected adults.) This initial abundance matrix has only zeroes in rows 3-8 because the disease has not yet broken out at the start of the simulation.

Usage

initial_abundance

Format

A numeric matrix with 8 rows and 6355 columns.


[Package epizootic version 1.0.0 Index]