%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  GFDrmtl
%global packver   0.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Multiple RMTL-Based Tests for Competing Risks Data in General Factorial Designs

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-MASS >= 7.3.53
BuildRequires:    R-CRAN-shinyjs >= 2.0.0
BuildRequires:    R-CRAN-plyr >= 1.8.6
BuildRequires:    R-CRAN-shiny >= 1.5.0
BuildRequires:    R-CRAN-shinythemes >= 1.1.2
BuildRequires:    R-CRAN-tippy >= 0.1.0
BuildRequires:    R-CRAN-GFDmcv 
BuildRequires:    R-CRAN-GFDrmst 
BuildRequires:    R-CRAN-lpSolve 
BuildRequires:    R-CRAN-shinyWidgets 
BuildRequires:    R-CRAN-shinyMatrix 
BuildRequires:    R-CRAN-mvtnorm 
Requires:         R-CRAN-MASS >= 7.3.53
Requires:         R-CRAN-shinyjs >= 2.0.0
Requires:         R-CRAN-plyr >= 1.8.6
Requires:         R-CRAN-shiny >= 1.5.0
Requires:         R-CRAN-shinythemes >= 1.1.2
Requires:         R-CRAN-tippy >= 0.1.0
Requires:         R-CRAN-GFDmcv 
Requires:         R-CRAN-GFDrmst 
Requires:         R-CRAN-lpSolve 
Requires:         R-CRAN-shinyWidgets 
Requires:         R-CRAN-shinyMatrix 
Requires:         R-CRAN-mvtnorm 

%description
We implemented multiple tests based on the restricted mean time lost
(RMTL) for general factorial designs as described in Munko et al. (2024)
<doi:10.48550/arXiv.2409.07917>. Therefore, an asymptotic test and a
permutation test are incorporated with a Wald-type test statistic. The
asymptotic test takes the asymptotic exact dependence structure of the
test statistics into account to gain more power. Furthermore, confidence
intervals for RMTL contrasts can be calculated and plotted and a stepwise
extension that can improve the power of the multiple tests is available.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}