extractVcf {DEploid} | R Documentation |
Extract VCF information
extractVcf(filename)
filename |
VCF file name. |
A dataframe list with members of haplotypes, proportions and log likelihood of the MCMC chain.
CHROM
SNP chromosomes.
POS
SNP positions.
refCount
reference allele count.
altCount
alternative allele count.
extractCoverageFromVcf
extractCoverageFromTxt
vcfFile = system.file("extdata", "PG0390-C.test.vcf.gz", package = "DEploid")
vcf = extractVcf(vcfFile)