Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c18f' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8168052-fedora-39-x86_64 --chroot fedora-39-x86_64 Version: 1.1 PID: 8969 Logging PID: 8970 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'bootstrap': 'off', 'build_id': 8168052, 'buildroot_pkgs': [], 'chroot': 'fedora-39-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '6b4583feb2fc37636d2e17789cc5a1fa775e4223', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-nlmixr2est', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-CRAN-nlmixr2est', 'package_version': '3.0.1-1.copr8168052', 'project_dirname': 'cran', 'project_name': 'cran', 'project_owner': 'iucar', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/iucar/cran/fedora-39-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'iucar/cran--iucar', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': None, 'submitter': 'iucar', 'tags': [], 'task_id': '8168052-fedora-39-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-nlmixr2est /var/lib/copr-rpmbuild/workspace/workdir-iipss6ur/R-CRAN-nlmixr2est --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-nlmixr2est', '/var/lib/copr-rpmbuild/workspace/workdir-iipss6ur/R-CRAN-nlmixr2est', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-iipss6ur/R-CRAN-nlmixr2est'... Running: git checkout 6b4583feb2fc37636d2e17789cc5a1fa775e4223 -- cmd: ['git', 'checkout', '6b4583feb2fc37636d2e17789cc5a1fa775e4223', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-iipss6ur/R-CRAN-nlmixr2est rc: 0 stdout: stderr: Note: switching to '6b4583feb2fc37636d2e17789cc5a1fa775e4223'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 6b4583f automatic import of R-CRAN-nlmixr2est Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-iipss6ur/R-CRAN-nlmixr2est rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading nlmixr2est_3.0.1.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o nlmixr2est_3.0.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/iucar/cran/R-CRAN-nlmixr2est/nlmixr2est_3.0.1.tar.gz/md5/bffa8daaaa2271126f8019ac1290a2b7/nlmixr2est_3.0.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 560k 100 560k 0 0 5678k 0 --:--:-- --:--:-- --:--:-- 5724k INFO: Reading stdout from command: md5sum nlmixr2est_3.0.1.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-iipss6ur/R-CRAN-nlmixr2est/R-CRAN-nlmixr2est.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-iipss6ur/R-CRAN-nlmixr2est --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1729648214.013762 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.9 starting (python version = 3.12.1, NVR = mock-5.9-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-iipss6ur/R-CRAN-nlmixr2est/R-CRAN-nlmixr2est.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-iipss6ur/R-CRAN-nlmixr2est --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1729648214.013762 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-iipss6ur/R-CRAN-nlmixr2est/R-CRAN-nlmixr2est.spec) Config(fedora-39-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.9 INFO: Mock Version: 5.9 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1729648214.013762/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf4 detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.1-1.fc39.noarch python3-dnf-plugins-core-4.9.0-1.fc39.noarch yum-4.21.1-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 41 MB/s | 27 MB 00:00 fedora 17 MB/s | 89 MB 00:05 updates 36 MB/s | 42 MB 00:01 Last metadata expiration check: 0:00:06 ago on Wed Oct 23 01:50:48 2024. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.26-1.fc39 updates 1.8 M bzip2 x86_64 1.0.8-16.fc39 fedora 52 k coreutils x86_64 9.3-7.fc39 updates 1.1 M cpio x86_64 2.14-4.fc39 fedora 279 k diffutils x86_64 3.10-3.fc39 fedora 398 k fedora-release-common noarch 39-36 updates 19 k findutils x86_64 1:4.9.0-6.fc39 updates 490 k gawk x86_64 5.2.2-2.fc39 fedora 1.1 M glibc-minimal-langpack x86_64 2.38-18.fc39 updates 73 k grep x86_64 3.11-3.fc39 fedora 298 k gzip x86_64 1.12-6.fc39 fedora 166 k info x86_64 7.0.3-3.fc39 fedora 182 k patch x86_64 2.7.6-22.fc39 fedora 125 k redhat-rpm-config noarch 266-1.fc39 updates 78 k rpm-build x86_64 4.19.1.1-1.fc39 updates 78 k sed x86_64 4.8-14.fc39 fedora 306 k shadow-utils x86_64 2:4.14.0-2.fc39 updates 1.3 M tar x86_64 2:1.35-2.fc39 fedora 864 k unzip x86_64 6.0-62.fc39 fedora 184 k util-linux x86_64 2.39.4-1.fc39 updates 1.2 M which x86_64 2.21-40.fc39 fedora 42 k xz x86_64 5.4.4-1.fc39 fedora 556 k Installing dependencies: alternatives x86_64 1.26-1.fc39 updates 39 k ansible-srpm-macros noarch 1-12.fc39 updates 21 k audit-libs x86_64 3.1.5-1.fc39 updates 123 k authselect x86_64 1.4.3-1.fc39 fedora 149 k authselect-libs x86_64 1.4.3-1.fc39 fedora 249 k basesystem noarch 11-18.fc39 fedora 7.2 k binutils x86_64 2.40-14.fc39 updates 5.6 M binutils-gold x86_64 2.40-14.fc39 updates 795 k bzip2-libs x86_64 1.0.8-16.fc39 fedora 41 k ca-certificates noarch 2024.2.69_v8.0.401-1.0.fc39 updates 871 k coreutils-common x86_64 9.3-7.fc39 updates 2.1 M cracklib x86_64 2.9.11-2.fc39 fedora 94 k crypto-policies noarch 20231204-1.git1e3a2e4.fc39 updates 100 k curl x86_64 8.2.1-5.fc39 updates 344 k cyrus-sasl-lib x86_64 2.1.28-11.fc39 fedora 793 k debugedit x86_64 5.0-12.fc39 updates 79 k dwz x86_64 0.15-3.fc39 fedora 134 k ed x86_64 1.19-4.fc39 fedora 79 k efi-srpm-macros noarch 5-9.fc39 fedora 22 k elfutils x86_64 0.191-2.fc39 updates 559 k elfutils-debuginfod-client x86_64 0.191-2.fc39 updates 38 k elfutils-default-yama-scope noarch 0.191-2.fc39 updates 13 k elfutils-libelf x86_64 0.191-2.fc39 updates 209 k elfutils-libs x86_64 0.191-2.fc39 updates 263 k fedora-gpg-keys noarch 39-2 updates 130 k fedora-release noarch 39-36 updates 8.6 k fedora-release-identity-basic noarch 39-36 updates 9.4 k fedora-repos noarch 39-2 updates 9.3 k file x86_64 5.44-5.fc39 fedora 49 k file-libs x86_64 5.44-5.fc39 fedora 729 k filesystem x86_64 3.18-6.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k forge-srpm-macros noarch 0.3.1-1.fc39 updates 19 k fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k gdb-minimal x86_64 15.1-1.fc39 updates 4.3 M gdbm-libs x86_64 1:1.23-4.fc39 fedora 56 k ghc-srpm-macros noarch 1.6.1-2.fc39 fedora 7.8 k glibc x86_64 2.38-18.fc39 updates 2.2 M glibc-common x86_64 2.38-18.fc39 updates 353 k glibc-gconv-extra x86_64 2.38-18.fc39 updates 1.6 M gmp x86_64 1:6.2.1-5.fc39 fedora 313 k gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k go-srpm-macros noarch 3.5.0-1.fc39 updates 28 k jansson x86_64 2.13.1-7.fc39 fedora 44 k kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k keyutils-libs x86_64 1.6.3-1.fc39 updates 31 k krb5-libs x86_64 1.21.3-1.fc39 updates 764 k libacl x86_64 2.3.1-9.fc39 updates 23 k libarchive x86_64 3.7.1-2.fc39 updates 407 k libattr x86_64 2.5.1-8.fc39 fedora 18 k libblkid x86_64 2.39.4-1.fc39 updates 116 k libbrotli x86_64 1.1.0-1.fc39 fedora 336 k libcap x86_64 2.48-9.fc39 updates 68 k libcap-ng x86_64 0.8.3-8.fc39 fedora 32 k libcom_err x86_64 1.47.0-2.fc39 fedora 26 k libcurl x86_64 8.2.1-5.fc39 updates 322 k libdb x86_64 5.3.28-56.fc39 fedora 760 k libeconf x86_64 0.5.2-2.fc39 updates 30 k libevent x86_64 2.1.12-9.fc39 fedora 258 k libfdisk x86_64 2.39.4-1.fc39 updates 161 k libffi x86_64 3.4.4-4.fc39 fedora 40 k libgcc x86_64 13.3.1-3.fc39 updates 120 k libgomp x86_64 13.3.1-3.fc39 updates 329 k libidn2 x86_64 2.3.7-1.fc39 updates 119 k libmount x86_64 2.39.4-1.fc39 updates 154 k libnghttp2 x86_64 1.55.1-5.fc39 updates 75 k libnsl2 x86_64 2.0.0-6.fc39 fedora 30 k libpkgconf x86_64 1.9.5-2.fc39 fedora 38 k libpsl x86_64 0.21.2-4.fc39 fedora 63 k libpwquality x86_64 1.4.5-6.fc39 fedora 120 k libselinux x86_64 3.5-5.fc39 fedora 87 k libsemanage x86_64 3.5-4.fc39 fedora 120 k libsepol x86_64 3.5-2.fc39 fedora 324 k libsigsegv x86_64 2.14-5.fc39 fedora 27 k libsmartcols x86_64 2.39.4-1.fc39 updates 67 k libssh x86_64 0.10.6-2.fc39 updates 212 k libssh-config noarch 0.10.6-2.fc39 updates 9.0 k libstdc++ x86_64 13.3.1-3.fc39 updates 870 k libtasn1 x86_64 4.19.0-3.fc39 fedora 74 k libtirpc x86_64 1.3.5-0.fc39 updates 94 k libtool-ltdl x86_64 2.4.7-7.fc39 fedora 36 k libunistring x86_64 1.1-5.fc39 fedora 543 k libutempter x86_64 1.2.1-10.fc39 fedora 26 k libuuid x86_64 2.39.4-1.fc39 updates 28 k libverto x86_64 0.3.2-6.fc39 fedora 20 k libxcrypt x86_64 4.4.36-2.fc39 fedora 119 k libxml2 x86_64 2.10.4-3.fc39 fedora 701 k libzstd x86_64 1.5.6-1.fc39 updates 312 k lua-libs x86_64 5.4.6-3.fc39 fedora 133 k lua-srpm-macros noarch 1-13.fc39 updates 8.7 k lz4-libs x86_64 1.9.4-4.fc39 fedora 67 k mpfr x86_64 4.2.0-3.fc39 fedora 344 k ncurses-base noarch 6.4-7.20230520.fc39.1 updates 88 k ncurses-libs x86_64 6.4-7.20230520.fc39.1 updates 336 k ocaml-srpm-macros noarch 8-2.fc39 fedora 14 k openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k openldap x86_64 2.6.7-1.fc39 updates 254 k openssl-libs x86_64 1:3.1.4-4.fc39 updates 2.2 M p11-kit x86_64 0.25.5-1.fc39 updates 515 k p11-kit-trust x86_64 0.25.5-1.fc39 updates 138 k package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k pam x86_64 1.5.3-3.fc39 updates 542 k pam-libs x86_64 1.5.3-3.fc39 updates 56 k pcre2 x86_64 10.42-1.fc39.2 fedora 233 k pcre2-syntax noarch 10.42-1.fc39.2 fedora 143 k perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k pkgconf x86_64 1.9.5-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k pkgconf-pkg-config x86_64 1.9.5-2.fc39 fedora 9.6 k popt x86_64 1.19-3.fc39 fedora 66 k publicsuffix-list-dafsa noarch 20240107-1.fc39 updates 58 k pyproject-srpm-macros noarch 1.15.1-1.fc39 updates 13 k python-srpm-macros noarch 3.12-8.fc39 updates 23 k qt5-srpm-macros noarch 5.15.14-2.fc39 updates 8.9 k qt6-srpm-macros noarch 6.6.2-1.fc39 updates 8.9 k readline x86_64 8.2-6.fc39 updates 212 k rpm x86_64 4.19.1.1-1.fc39 updates 538 k rpm-build-libs x86_64 4.19.1.1-1.fc39 updates 95 k rpm-libs x86_64 4.19.1.1-1.fc39 updates 312 k rpm-sequoia x86_64 1.7.0-1.fc39 updates 904 k rpmautospec-rpm-macros noarch 0.7.2-1.fc39 updates 10 k rust-srpm-macros noarch 26.3-1.fc39 updates 13 k setup noarch 2.14.4-1.fc39 fedora 154 k sqlite-libs x86_64 3.42.0-7.fc39 fedora 678 k systemd-libs x86_64 254.18-1.fc39 updates 682 k util-linux-core x86_64 2.39.4-1.fc39 updates 507 k xxhash-libs x86_64 0.8.2-4.fc39 updates 37 k xz-libs x86_64 5.4.4-1.fc39 fedora 108 k zip x86_64 3.0-39.fc39 fedora 266 k zlib x86_64 1.2.13-4.fc39 fedora 94 k zstd x86_64 1.5.6-1.fc39 updates 479 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 153 Packages Total download size: 52 M Installed size: 179 M Downloading Packages: (1/153): basesystem-11-18.fc39.noarch.rpm 97 kB/s | 7.2 kB 00:00 (2/153): bzip2-1.0.8-16.fc39.x86_64.rpm 1.1 MB/s | 52 kB 00:00 (3/153): authselect-1.4.3-1.fc39.x86_64.rpm 1.2 MB/s | 149 kB 00:00 (4/153): bzip2-libs-1.0.8-16.fc39.x86_64.rpm 1.4 MB/s | 41 kB 00:00 (5/153): authselect-libs-1.4.3-1.fc39.x86_64.rp 1.6 MB/s | 249 kB 00:00 (6/153): cpio-2.14-4.fc39.x86_64.rpm 5.8 MB/s | 279 kB 00:00 (7/153): cracklib-2.9.11-2.fc39.x86_64.rpm 2.3 MB/s | 94 kB 00:00 (8/153): diffutils-3.10-3.fc39.x86_64.rpm 10 MB/s | 398 kB 00:00 (9/153): cyrus-sasl-lib-2.1.28-11.fc39.x86_64.r 12 MB/s | 793 kB 00:00 (10/153): dwz-0.15-3.fc39.x86_64.rpm 4.4 MB/s | 134 kB 00:00 (11/153): ed-1.19-4.fc39.x86_64.rpm 3.8 MB/s | 79 kB 00:00 (12/153): efi-srpm-macros-5-9.fc39.noarch.rpm 1.1 MB/s | 22 kB 00:00 (13/153): file-5.44-5.fc39.x86_64.rpm 2.2 MB/s | 49 kB 00:00 (14/153): file-libs-5.44-5.fc39.x86_64.rpm 7.6 MB/s | 729 kB 00:00 (15/153): filesystem-3.18-6.fc39.x86_64.rpm 11 MB/s | 1.1 MB 00:00 (16/153): fpc-srpm-macros-1.3-8.fc39.noarch.rpm 339 kB/s | 7.4 kB 00:00 (17/153): fonts-srpm-macros-2.0.5-12.fc39.noarc 259 kB/s | 26 kB 00:00 (18/153): gdbm-libs-1.23-4.fc39.x86_64.rpm 1.9 MB/s | 56 kB 00:00 (19/153): gawk-5.2.2-2.fc39.x86_64.rpm 24 MB/s | 1.1 MB 00:00 (20/153): ghc-srpm-macros-1.6.1-2.fc39.noarch.r 258 kB/s | 7.8 kB 00:00 (21/153): gnat-srpm-macros-6-3.fc39.noarch.rpm 335 kB/s | 8.8 kB 00:00 (22/153): gmp-6.2.1-5.fc39.x86_64.rpm 9.4 MB/s | 313 kB 00:00 (23/153): gzip-1.12-6.fc39.x86_64.rpm 5.5 MB/s | 166 kB 00:00 (24/153): jansson-2.13.1-7.fc39.x86_64.rpm 1.6 MB/s | 44 kB 00:00 (25/153): grep-3.11-3.fc39.x86_64.rpm 3.1 MB/s | 298 kB 00:00 (26/153): kernel-srpm-macros-1.0-20.fc39.noarch 490 kB/s | 10 kB 00:00 (27/153): libattr-2.5.1-8.fc39.x86_64.rpm 631 kB/s | 18 kB 00:00 (28/153): libbrotli-1.1.0-1.fc39.x86_64.rpm 10 MB/s | 336 kB 00:00 (29/153): libcap-ng-0.8.3-8.fc39.x86_64.rpm 975 kB/s | 32 kB 00:00 (30/153): libcom_err-1.47.0-2.fc39.x86_64.rpm 957 kB/s | 26 kB 00:00 (31/153): info-7.0.3-3.fc39.x86_64.rpm 1.0 MB/s | 182 kB 00:00 (32/153): libffi-3.4.4-4.fc39.x86_64.rpm 1.3 MB/s | 40 kB 00:00 (33/153): libevent-2.1.12-9.fc39.x86_64.rpm 3.4 MB/s | 258 kB 00:00 (34/153): libpkgconf-1.9.5-2.fc39.x86_64.rpm 1.9 MB/s | 38 kB 00:00 (35/153): libnsl2-2.0.0-6.fc39.x86_64.rpm 1.1 MB/s | 30 kB 00:00 (36/153): libpsl-0.21.2-4.fc39.x86_64.rpm 3.0 MB/s | 63 kB 00:00 (37/153): libselinux-3.5-5.fc39.x86_64.rpm 4.0 MB/s | 87 kB 00:00 (38/153): libpwquality-1.4.5-6.fc39.x86_64.rpm 2.5 MB/s | 120 kB 00:00 (39/153): libsemanage-3.5-4.fc39.x86_64.rpm 5.2 MB/s | 120 kB 00:00 (40/153): libdb-5.3.28-56.fc39.x86_64.rpm 4.1 MB/s | 760 kB 00:00 (41/153): libsigsegv-2.14-5.fc39.x86_64.rpm 1.4 MB/s | 27 kB 00:00 (42/153): libtool-ltdl-2.4.7-7.fc39.x86_64.rpm 1.8 MB/s | 36 kB 00:00 (43/153): libtasn1-4.19.0-3.fc39.x86_64.rpm 2.2 MB/s | 74 kB 00:00 (44/153): libsepol-3.5-2.fc39.x86_64.rpm 4.0 MB/s | 324 kB 00:00 (45/153): libutempter-1.2.1-10.fc39.x86_64.rpm 1.1 MB/s | 26 kB 00:00 (46/153): libunistring-1.1-5.fc39.x86_64.rpm 13 MB/s | 543 kB 00:00 (47/153): libverto-0.3.2-6.fc39.x86_64.rpm 900 kB/s | 20 kB 00:00 (48/153): libxml2-2.10.4-3.fc39.x86_64.rpm 7.9 MB/s | 701 kB 00:00 (49/153): lua-libs-5.4.6-3.fc39.x86_64.rpm 1.6 MB/s | 133 kB 00:00 (50/153): libxcrypt-4.4.36-2.fc39.x86_64.rpm 1.1 MB/s | 119 kB 00:00 (51/153): lz4-libs-1.9.4-4.fc39.x86_64.rpm 2.2 MB/s | 67 kB 00:00 (52/153): mpfr-4.2.0-3.fc39.x86_64.rpm 11 MB/s | 344 kB 00:00 (53/153): ocaml-srpm-macros-8-2.fc39.noarch.rpm 663 kB/s | 14 kB 00:00 (54/153): openblas-srpm-macros-2-14.fc39.noarch 395 kB/s | 7.5 kB 00:00 (55/153): package-notes-srpm-macros-0.5-9.fc39. 596 kB/s | 11 kB 00:00 (56/153): patch-2.7.6-22.fc39.x86_64.rpm 2.7 MB/s | 125 kB 00:00 (57/153): pcre2-syntax-10.42-1.fc39.2.noarch.rp 4.5 MB/s | 143 kB 00:00 (58/153): perl-srpm-macros-1-51.fc39.noarch.rpm 393 kB/s | 8.0 kB 00:00 (59/153): pcre2-10.42-1.fc39.2.x86_64.rpm 4.0 MB/s | 233 kB 00:00 (60/153): pkgconf-1.9.5-2.fc39.x86_64.rpm 1.6 MB/s | 42 kB 00:00 (61/153): pkgconf-m4-1.9.5-2.fc39.noarch.rpm 734 kB/s | 14 kB 00:00 (62/153): pkgconf-pkg-config-1.9.5-2.fc39.x86_6 499 kB/s | 9.6 kB 00:00 (63/153): popt-1.19-3.fc39.x86_64.rpm 2.1 MB/s | 66 kB 00:00 (64/153): sed-4.8-14.fc39.x86_64.rpm 10 MB/s | 306 kB 00:00 (65/153): setup-2.14.4-1.fc39.noarch.rpm 3.6 MB/s | 154 kB 00:00 (66/153): tar-1.35-2.fc39.x86_64.rpm 14 MB/s | 864 kB 00:00 (67/153): unzip-6.0-62.fc39.x86_64.rpm 2.2 MB/s | 184 kB 00:00 (68/153): which-2.21-40.fc39.x86_64.rpm 790 kB/s | 42 kB 00:00 (69/153): xz-libs-5.4.4-1.fc39.x86_64.rpm 4.4 MB/s | 108 kB 00:00 (70/153): 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rpm-build-4.19.1.1-1.fc39.x86_64.rpm 768 kB/s | 78 kB 00:00 (143/153): readline-8.2-6.fc39.x86_64.rpm 887 kB/s | 212 kB 00:00 (144/153): rpm-libs-4.19.1.1-1.fc39.x86_64.rpm 5.4 MB/s | 312 kB 00:00 (145/153): rpm-sequoia-1.7.0-1.fc39.x86_64.rpm 15 MB/s | 904 kB 00:00 (146/153): rpmautospec-rpm-macros-0.7.2-1.fc39. 177 kB/s | 10 kB 00:00 (147/153): rust-srpm-macros-26.3-1.fc39.noarch. 241 kB/s | 13 kB 00:00 (148/153): shadow-utils-4.14.0-2.fc39.x86_64.rp 7.3 MB/s | 1.3 MB 00:00 (149/153): util-linux-2.39.4-1.fc39.x86_64.rpm 6.0 MB/s | 1.2 MB 00:00 (150/153): util-linux-core-2.39.4-1.fc39.x86_64 8.6 MB/s | 507 kB 00:00 (151/153): xxhash-libs-0.8.2-4.fc39.x86_64.rpm 798 kB/s | 37 kB 00:00 (152/153): zstd-1.5.6-1.fc39.x86_64.rpm 9.8 MB/s | 479 kB 00:00 (153/153): systemd-libs-254.18-1.fc39.x86_64.rp 1.3 MB/s | 682 kB 00:00 -------------------------------------------------------------------------------- Total 11 MB/s | 52 MB 00:04 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-6.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.3.1-3.fc39.x86_64 1/153 Running scriptlet: libgcc-13.3.1-3.fc39.x86_64 1/153 Installing : crypto-policies-20231204-1.git1e3a2e4.fc39.noarc 2/153 Running scriptlet: crypto-policies-20231204-1.git1e3a2e4.fc39.noarc 2/153 Installing : fedora-release-identity-basic-39-36.noarch 3/153 Installing : fedora-gpg-keys-39-2.noarch 4/153 Installing : fedora-repos-39-2.noarch 5/153 Installing : fedora-release-common-39-36.noarch 6/153 Installing : fedora-release-39-36.noarch 7/153 Installing : setup-2.14.4-1.fc39.noarch 8/153 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.4-1.fc39.noarch 8/153 Installing : filesystem-3.18-6.fc39.x86_64 9/153 Installing : basesystem-11-18.fc39.noarch 10/153 Installing : rust-srpm-macros-26.3-1.fc39.noarch 11/153 Installing : qt6-srpm-macros-6.6.2-1.fc39.noarch 12/153 Installing : qt5-srpm-macros-5.15.14-2.fc39.noarch 13/153 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shadow-utils-2:4.14.0-2.fc39.x86_64 133/153 Running scriptlet: libutempter-1.2.1-10.fc39.x86_64 134/153 Installing : libutempter-1.2.1-10.fc39.x86_64 134/153 Installing : patch-2.7.6-22.fc39.x86_64 135/153 Installing : tar-2:1.35-2.fc39.x86_64 136/153 Installing : package-notes-srpm-macros-0.5-9.fc39.noarch 137/153 Installing : openblas-srpm-macros-2-14.fc39.noarch 138/153 Installing : ocaml-srpm-macros-8-2.fc39.noarch 139/153 Installing : kernel-srpm-macros-1.0-20.fc39.noarch 140/153 Installing : gnat-srpm-macros-6-3.fc39.noarch 141/153 Installing : ghc-srpm-macros-1.6.1-2.fc39.noarch 142/153 Installing : fpc-srpm-macros-1.3-8.fc39.noarch 143/153 Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 144/153 Installing : forge-srpm-macros-0.3.1-1.fc39.noarch 145/153 Installing : go-srpm-macros-3.5.0-1.fc39.noarch 146/153 Installing : python-srpm-macros-3.12-8.fc39.noarch 147/153 Installing : redhat-rpm-config-266-1.fc39.noarch 148/153 Installing : rpm-build-4.19.1.1-1.fc39.x86_64 149/153 Installing : pyproject-srpm-macros-1.15.1-1.fc39.noarch 150/153 Installing : util-linux-2.39.4-1.fc39.x86_64 151/153 Running scriptlet: util-linux-2.39.4-1.fc39.x86_64 151/153 Installing : which-2.21-40.fc39.x86_64 152/153 Installing : info-7.0.3-3.fc39.x86_64 153/153 Running scriptlet: filesystem-3.18-6.fc39.x86_64 153/153 Running scriptlet: ca-certificates-2024.2.69_v8.0.401-1.0.fc39.noar 153/153 Running scriptlet: authselect-libs-1.4.3-1.fc39.x86_64 153/153 Running scriptlet: rpm-4.19.1.1-1.fc39.x86_64 153/153 Running scriptlet: info-7.0.3-3.fc39.x86_64 153/153 Verifying : authselect-1.4.3-1.fc39.x86_64 1/153 Verifying : authselect-libs-1.4.3-1.fc39.x86_64 2/153 Verifying : basesystem-11-18.fc39.noarch 3/153 Verifying : bzip2-1.0.8-16.fc39.x86_64 4/153 Verifying : bzip2-libs-1.0.8-16.fc39.x86_64 5/153 Verifying : cpio-2.14-4.fc39.x86_64 6/153 Verifying : cracklib-2.9.11-2.fc39.x86_64 7/153 Verifying : cyrus-sasl-lib-2.1.28-11.fc39.x86_64 8/153 Verifying : diffutils-3.10-3.fc39.x86_64 9/153 Verifying : dwz-0.15-3.fc39.x86_64 10/153 Verifying : ed-1.19-4.fc39.x86_64 11/153 Verifying : efi-srpm-macros-5-9.fc39.noarch 12/153 Verifying : file-5.44-5.fc39.x86_64 13/153 Verifying : file-libs-5.44-5.fc39.x86_64 14/153 Verifying : filesystem-3.18-6.fc39.x86_64 15/153 Verifying : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 16/153 Verifying : fpc-srpm-macros-1.3-8.fc39.noarch 17/153 Verifying : gawk-5.2.2-2.fc39.x86_64 18/153 Verifying : gdbm-libs-1:1.23-4.fc39.x86_64 19/153 Verifying : ghc-srpm-macros-1.6.1-2.fc39.noarch 20/153 Verifying : gmp-1:6.2.1-5.fc39.x86_64 21/153 Verifying : gnat-srpm-macros-6-3.fc39.noarch 22/153 Verifying : grep-3.11-3.fc39.x86_64 23/153 Verifying : gzip-1.12-6.fc39.x86_64 24/153 Verifying : info-7.0.3-3.fc39.x86_64 25/153 Verifying : jansson-2.13.1-7.fc39.x86_64 26/153 Verifying : kernel-srpm-macros-1.0-20.fc39.noarch 27/153 Verifying : libattr-2.5.1-8.fc39.x86_64 28/153 Verifying : libbrotli-1.1.0-1.fc39.x86_64 29/153 Verifying : libcap-ng-0.8.3-8.fc39.x86_64 30/153 Verifying : libcom_err-1.47.0-2.fc39.x86_64 31/153 Verifying : libdb-5.3.28-56.fc39.x86_64 32/153 Verifying : libevent-2.1.12-9.fc39.x86_64 33/153 Verifying : libffi-3.4.4-4.fc39.x86_64 34/153 Verifying : libnsl2-2.0.0-6.fc39.x86_64 35/153 Verifying : libpkgconf-1.9.5-2.fc39.x86_64 36/153 Verifying : libpsl-0.21.2-4.fc39.x86_64 37/153 Verifying : libpwquality-1.4.5-6.fc39.x86_64 38/153 Verifying : libselinux-3.5-5.fc39.x86_64 39/153 Verifying : libsemanage-3.5-4.fc39.x86_64 40/153 Verifying : libsepol-3.5-2.fc39.x86_64 41/153 Verifying : libsigsegv-2.14-5.fc39.x86_64 42/153 Verifying : libtasn1-4.19.0-3.fc39.x86_64 43/153 Verifying : libtool-ltdl-2.4.7-7.fc39.x86_64 44/153 Verifying : libunistring-1.1-5.fc39.x86_64 45/153 Verifying : libutempter-1.2.1-10.fc39.x86_64 46/153 Verifying : libverto-0.3.2-6.fc39.x86_64 47/153 Verifying : libxcrypt-4.4.36-2.fc39.x86_64 48/153 Verifying : libxml2-2.10.4-3.fc39.x86_64 49/153 Verifying : lua-libs-5.4.6-3.fc39.x86_64 50/153 Verifying : lz4-libs-1.9.4-4.fc39.x86_64 51/153 Verifying : mpfr-4.2.0-3.fc39.x86_64 52/153 Verifying : ocaml-srpm-macros-8-2.fc39.noarch 53/153 Verifying : openblas-srpm-macros-2-14.fc39.noarch 54/153 Verifying : package-notes-srpm-macros-0.5-9.fc39.noarch 55/153 Verifying : patch-2.7.6-22.fc39.x86_64 56/153 Verifying : pcre2-10.42-1.fc39.2.x86_64 57/153 Verifying : pcre2-syntax-10.42-1.fc39.2.noarch 58/153 Verifying : perl-srpm-macros-1-51.fc39.noarch 59/153 Verifying : pkgconf-1.9.5-2.fc39.x86_64 60/153 Verifying : pkgconf-m4-1.9.5-2.fc39.noarch 61/153 Verifying : pkgconf-pkg-config-1.9.5-2.fc39.x86_64 62/153 Verifying : popt-1.19-3.fc39.x86_64 63/153 Verifying : sed-4.8-14.fc39.x86_64 64/153 Verifying : setup-2.14.4-1.fc39.noarch 65/153 Verifying : sqlite-libs-3.42.0-7.fc39.x86_64 66/153 Verifying : tar-2:1.35-2.fc39.x86_64 67/153 Verifying : unzip-6.0-62.fc39.x86_64 68/153 Verifying : which-2.21-40.fc39.x86_64 69/153 Verifying : xz-5.4.4-1.fc39.x86_64 70/153 Verifying : xz-libs-5.4.4-1.fc39.x86_64 71/153 Verifying : zip-3.0-39.fc39.x86_64 72/153 Verifying : zlib-1.2.13-4.fc39.x86_64 73/153 Verifying : alternatives-1.26-1.fc39.x86_64 74/153 Verifying : ansible-srpm-macros-1-12.fc39.noarch 75/153 Verifying : audit-libs-3.1.5-1.fc39.x86_64 76/153 Verifying : bash-5.2.26-1.fc39.x86_64 77/153 Verifying : binutils-2.40-14.fc39.x86_64 78/153 Verifying : binutils-gold-2.40-14.fc39.x86_64 79/153 Verifying : ca-certificates-2024.2.69_v8.0.401-1.0.fc39.noar 80/153 Verifying : coreutils-9.3-7.fc39.x86_64 81/153 Verifying : coreutils-common-9.3-7.fc39.x86_64 82/153 Verifying : crypto-policies-20231204-1.git1e3a2e4.fc39.noarc 83/153 Verifying : curl-8.2.1-5.fc39.x86_64 84/153 Verifying : debugedit-5.0-12.fc39.x86_64 85/153 Verifying : elfutils-0.191-2.fc39.x86_64 86/153 Verifying : elfutils-debuginfod-client-0.191-2.fc39.x86_64 87/153 Verifying : elfutils-default-yama-scope-0.191-2.fc39.noarch 88/153 Verifying : elfutils-libelf-0.191-2.fc39.x86_64 89/153 Verifying : elfutils-libs-0.191-2.fc39.x86_64 90/153 Verifying : fedora-gpg-keys-39-2.noarch 91/153 Verifying : fedora-release-39-36.noarch 92/153 Verifying : fedora-release-common-39-36.noarch 93/153 Verifying : fedora-release-identity-basic-39-36.noarch 94/153 Verifying : fedora-repos-39-2.noarch 95/153 Verifying : findutils-1:4.9.0-6.fc39.x86_64 96/153 Verifying : forge-srpm-macros-0.3.1-1.fc39.noarch 97/153 Verifying : gdb-minimal-15.1-1.fc39.x86_64 98/153 Verifying : glibc-2.38-18.fc39.x86_64 99/153 Verifying : glibc-common-2.38-18.fc39.x86_64 100/153 Verifying : glibc-gconv-extra-2.38-18.fc39.x86_64 101/153 Verifying : glibc-minimal-langpack-2.38-18.fc39.x86_64 102/153 Verifying : go-srpm-macros-3.5.0-1.fc39.noarch 103/153 Verifying : keyutils-libs-1.6.3-1.fc39.x86_64 104/153 Verifying : krb5-libs-1.21.3-1.fc39.x86_64 105/153 Verifying : libacl-2.3.1-9.fc39.x86_64 106/153 Verifying : libarchive-3.7.1-2.fc39.x86_64 107/153 Verifying : libblkid-2.39.4-1.fc39.x86_64 108/153 Verifying : libcap-2.48-9.fc39.x86_64 109/153 Verifying : libcurl-8.2.1-5.fc39.x86_64 110/153 Verifying : libeconf-0.5.2-2.fc39.x86_64 111/153 Verifying : libfdisk-2.39.4-1.fc39.x86_64 112/153 Verifying : libgcc-13.3.1-3.fc39.x86_64 113/153 Verifying : libgomp-13.3.1-3.fc39.x86_64 114/153 Verifying : libidn2-2.3.7-1.fc39.x86_64 115/153 Verifying : libmount-2.39.4-1.fc39.x86_64 116/153 Verifying : libnghttp2-1.55.1-5.fc39.x86_64 117/153 Verifying : libsmartcols-2.39.4-1.fc39.x86_64 118/153 Verifying : libssh-0.10.6-2.fc39.x86_64 119/153 Verifying : libssh-config-0.10.6-2.fc39.noarch 120/153 Verifying : libstdc++-13.3.1-3.fc39.x86_64 121/153 Verifying : libtirpc-1.3.5-0.fc39.x86_64 122/153 Verifying : libuuid-2.39.4-1.fc39.x86_64 123/153 Verifying : libzstd-1.5.6-1.fc39.x86_64 124/153 Verifying : lua-srpm-macros-1-13.fc39.noarch 125/153 Verifying : ncurses-base-6.4-7.20230520.fc39.1.noarch 126/153 Verifying : ncurses-libs-6.4-7.20230520.fc39.1.x86_64 127/153 Verifying : openldap-2.6.7-1.fc39.x86_64 128/153 Verifying : openssl-libs-1:3.1.4-4.fc39.x86_64 129/153 Verifying : p11-kit-0.25.5-1.fc39.x86_64 130/153 Verifying : p11-kit-trust-0.25.5-1.fc39.x86_64 131/153 Verifying : pam-1.5.3-3.fc39.x86_64 132/153 Verifying : pam-libs-1.5.3-3.fc39.x86_64 133/153 Verifying : publicsuffix-list-dafsa-20240107-1.fc39.noarch 134/153 Verifying : pyproject-srpm-macros-1.15.1-1.fc39.noarch 135/153 Verifying : python-srpm-macros-3.12-8.fc39.noarch 136/153 Verifying : qt5-srpm-macros-5.15.14-2.fc39.noarch 137/153 Verifying : qt6-srpm-macros-6.6.2-1.fc39.noarch 138/153 Verifying : readline-8.2-6.fc39.x86_64 139/153 Verifying : redhat-rpm-config-266-1.fc39.noarch 140/153 Verifying : rpm-4.19.1.1-1.fc39.x86_64 141/153 Verifying : rpm-build-4.19.1.1-1.fc39.x86_64 142/153 Verifying : rpm-build-libs-4.19.1.1-1.fc39.x86_64 143/153 Verifying : rpm-libs-4.19.1.1-1.fc39.x86_64 144/153 Verifying : rpm-sequoia-1.7.0-1.fc39.x86_64 145/153 Verifying : rpmautospec-rpm-macros-0.7.2-1.fc39.noarch 146/153 Verifying : rust-srpm-macros-26.3-1.fc39.noarch 147/153 Verifying : shadow-utils-2:4.14.0-2.fc39.x86_64 148/153 Verifying : systemd-libs-254.18-1.fc39.x86_64 149/153 Verifying : util-linux-2.39.4-1.fc39.x86_64 150/153 Verifying : util-linux-core-2.39.4-1.fc39.x86_64 151/153 Verifying : xxhash-libs-0.8.2-4.fc39.x86_64 152/153 Verifying : zstd-1.5.6-1.fc39.x86_64 153/153 Installed products updated. Installed: alternatives-1.26-1.fc39.x86_64 ansible-srpm-macros-1-12.fc39.noarch audit-libs-3.1.5-1.fc39.x86_64 authselect-1.4.3-1.fc39.x86_64 authselect-libs-1.4.3-1.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.26-1.fc39.x86_64 binutils-2.40-14.fc39.x86_64 binutils-gold-2.40-14.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2024.2.69_v8.0.401-1.0.fc39.noarch coreutils-9.3-7.fc39.x86_64 coreutils-common-9.3-7.fc39.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231204-1.git1e3a2e4.fc39.noarch curl-8.2.1-5.fc39.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-12.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.191-2.fc39.x86_64 elfutils-debuginfod-client-0.191-2.fc39.x86_64 elfutils-default-yama-scope-0.191-2.fc39.noarch elfutils-libelf-0.191-2.fc39.x86_64 elfutils-libs-0.191-2.fc39.x86_64 fedora-gpg-keys-39-2.noarch fedora-release-39-36.noarch fedora-release-common-39-36.noarch fedora-release-identity-basic-39-36.noarch fedora-repos-39-2.noarch file-5.44-5.fc39.x86_64 file-libs-5.44-5.fc39.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-1:4.9.0-6.fc39.x86_64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.3.1-1.fc39.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-15.1-1.fc39.x86_64 gdbm-libs-1:1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38-18.fc39.x86_64 glibc-common-2.38-18.fc39.x86_64 glibc-gconv-extra-2.38-18.fc39.x86_64 glibc-minimal-langpack-2.38-18.fc39.x86_64 gmp-1:6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.5.0-1.fc39.noarch grep-3.11-3.fc39.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc39.x86_64 krb5-libs-1.21.3-1.fc39.x86_64 libacl-2.3.1-9.fc39.x86_64 libarchive-3.7.1-2.fc39.x86_64 libattr-2.5.1-8.fc39.x86_64 libblkid-2.39.4-1.fc39.x86_64 libbrotli-1.1.0-1.fc39.x86_64 libcap-2.48-9.fc39.x86_64 libcap-ng-0.8.3-8.fc39.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.2.1-5.fc39.x86_64 libdb-5.3.28-56.fc39.x86_64 libeconf-0.5.2-2.fc39.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.4-1.fc39.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.3.1-3.fc39.x86_64 libgomp-13.3.1-3.fc39.x86_64 libidn2-2.3.7-1.fc39.x86_64 libmount-2.39.4-1.fc39.x86_64 libnghttp2-1.55.1-5.fc39.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.4-1.fc39.x86_64 libssh-0.10.6-2.fc39.x86_64 libssh-config-0.10.6-2.fc39.noarch libstdc++-13.3.1-3.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.5-0.fc39.x86_64 libtool-ltdl-2.4.7-7.fc39.x86_64 libunistring-1.1-5.fc39.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.4-1.fc39.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 libzstd-1.5.6-1.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-13.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc39.1.noarch ncurses-libs-6.4-7.20230520.fc39.1.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.7-1.fc39.x86_64 openssl-libs-1:3.1.4-4.fc39.x86_64 p11-kit-0.25.5-1.fc39.x86_64 p11-kit-trust-0.25.5-1.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-3.fc39.x86_64 pam-libs-1.5.3-3.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20240107-1.fc39.noarch pyproject-srpm-macros-1.15.1-1.fc39.noarch python-srpm-macros-3.12-8.fc39.noarch qt5-srpm-macros-5.15.14-2.fc39.noarch qt6-srpm-macros-6.6.2-1.fc39.noarch readline-8.2-6.fc39.x86_64 redhat-rpm-config-266-1.fc39.noarch rpm-4.19.1.1-1.fc39.x86_64 rpm-build-4.19.1.1-1.fc39.x86_64 rpm-build-libs-4.19.1.1-1.fc39.x86_64 rpm-libs-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.7.0-1.fc39.x86_64 rpmautospec-rpm-macros-0.7.2-1.fc39.noarch rust-srpm-macros-26.3-1.fc39.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-2:4.14.0-2.fc39.x86_64 sqlite-libs-3.42.0-7.fc39.x86_64 systemd-libs-254.18-1.fc39.x86_64 tar-2:1.35-2.fc39.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.4-1.fc39.x86_64 util-linux-core-2.39.4-1.fc39.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-4.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-39.fc39.x86_64 zlib-1.2.13-4.fc39.x86_64 zstd-1.5.6-1.fc39.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-1.fc39.x86_64 ansible-srpm-macros-1-12.fc39.noarch audit-libs-3.1.5-1.fc39.x86_64 authselect-1.4.3-1.fc39.x86_64 authselect-libs-1.4.3-1.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.26-1.fc39.x86_64 binutils-2.40-14.fc39.x86_64 binutils-gold-2.40-14.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2024.2.69_v8.0.401-1.0.fc39.noarch coreutils-9.3-7.fc39.x86_64 coreutils-common-9.3-7.fc39.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231204-1.git1e3a2e4.fc39.noarch curl-8.2.1-5.fc39.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-12.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.191-2.fc39.x86_64 elfutils-debuginfod-client-0.191-2.fc39.x86_64 elfutils-default-yama-scope-0.191-2.fc39.noarch elfutils-libelf-0.191-2.fc39.x86_64 elfutils-libs-0.191-2.fc39.x86_64 fedora-gpg-keys-39-2.noarch fedora-release-39-36.noarch fedora-release-common-39-36.noarch fedora-release-identity-basic-39-36.noarch fedora-repos-39-2.noarch file-5.44-5.fc39.x86_64 file-libs-5.44-5.fc39.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-4.9.0-6.fc39.x86_64 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.3.1-1.fc39.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-15.1-1.fc39.x86_64 gdbm-libs-1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38-18.fc39.x86_64 glibc-common-2.38-18.fc39.x86_64 glibc-gconv-extra-2.38-18.fc39.x86_64 glibc-minimal-langpack-2.38-18.fc39.x86_64 gmp-6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.5.0-1.fc39.noarch gpg-pubkey-18b8e74c-62f2920f grep-3.11-3.fc39.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc39.x86_64 krb5-libs-1.21.3-1.fc39.x86_64 libacl-2.3.1-9.fc39.x86_64 libarchive-3.7.1-2.fc39.x86_64 libattr-2.5.1-8.fc39.x86_64 libblkid-2.39.4-1.fc39.x86_64 libbrotli-1.1.0-1.fc39.x86_64 libcap-2.48-9.fc39.x86_64 libcap-ng-0.8.3-8.fc39.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.2.1-5.fc39.x86_64 libdb-5.3.28-56.fc39.x86_64 libeconf-0.5.2-2.fc39.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.4-1.fc39.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.3.1-3.fc39.x86_64 libgomp-13.3.1-3.fc39.x86_64 libidn2-2.3.7-1.fc39.x86_64 libmount-2.39.4-1.fc39.x86_64 libnghttp2-1.55.1-5.fc39.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.4-1.fc39.x86_64 libssh-0.10.6-2.fc39.x86_64 libssh-config-0.10.6-2.fc39.noarch libstdc++-13.3.1-3.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.5-0.fc39.x86_64 libtool-ltdl-2.4.7-7.fc39.x86_64 libunistring-1.1-5.fc39.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.4-1.fc39.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 libzstd-1.5.6-1.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-13.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc39.1.noarch ncurses-libs-6.4-7.20230520.fc39.1.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.7-1.fc39.x86_64 openssl-libs-3.1.4-4.fc39.x86_64 p11-kit-0.25.5-1.fc39.x86_64 p11-kit-trust-0.25.5-1.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-3.fc39.x86_64 pam-libs-1.5.3-3.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20240107-1.fc39.noarch pyproject-srpm-macros-1.15.1-1.fc39.noarch python-srpm-macros-3.12-8.fc39.noarch qt5-srpm-macros-5.15.14-2.fc39.noarch qt6-srpm-macros-6.6.2-1.fc39.noarch readline-8.2-6.fc39.x86_64 redhat-rpm-config-266-1.fc39.noarch rpm-4.19.1.1-1.fc39.x86_64 rpm-build-4.19.1.1-1.fc39.x86_64 rpm-build-libs-4.19.1.1-1.fc39.x86_64 rpm-libs-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.7.0-1.fc39.x86_64 rpmautospec-rpm-macros-0.7.2-1.fc39.noarch rust-srpm-macros-26.3-1.fc39.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-4.14.0-2.fc39.x86_64 sqlite-libs-3.42.0-7.fc39.x86_64 systemd-libs-254.18-1.fc39.x86_64 tar-1.35-2.fc39.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.4-1.fc39.x86_64 util-linux-core-2.39.4-1.fc39.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-4.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-39.fc39.x86_64 zlib-1.2.13-4.fc39.x86_64 zstd-1.5.6-1.fc39.x86_64 Start: buildsrpm Start: rpmbuild -bs warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1729648214.013762/root/var/log/dnf.log /var/lib/mock/fedora-39-x86_64-1729648214.013762/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1729648214.013762/root/var/log/dnf.rpm.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-iipss6ur/R-CRAN-nlmixr2est/R-CRAN-nlmixr2est.spec) Config(child) 1 minutes 6 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.src.rpm) Config(fedora-39-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1729648214.013762/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.21.1-1.fc39.noarch python3-dnf-plugins-core-4.9.0-1.fc39.noarch yum-4.21.1-1.fc39.noarch dnf5-5.1.17-2.fc39.x86_64 dnf5-plugins-5.1.17-2.fc39.x86_64 Finish: chroot init Start: build phase for R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.src.rpm Start: build setup for R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 26 kB/s | 1.5 kB 00:00 Copr repository 32 MB/s | 27 MB 00:00 fedora 1.0 MB/s | 30 kB 00:00 updates 971 kB/s | 28 kB 00:00 Dependencies resolved. ========================================================================================== Package Arch Version Repo Size ========================================================================================== Installing: R-CRAN-BH noarch 1.84.0.0-1.fc39.copr6880886 copr_base 9.8 M R-CRAN-Matrix x86_64 1.6.5-1.fc39.copr6886765 copr_base 4.1 M R-CRAN-Rcpp x86_64 1.0.13-1.fc39.copr7745410 copr_base 2.0 M R-CRAN-RcppArmadillo x86_64 14.0.2.1-1.fc39.copr8016517 copr_base 918 k R-CRAN-RcppEigen x86_64 0.3.4.0.2-1.fc39.copr8100507 copr_base 1.4 M R-CRAN-backports x86_64 1.5.0-1.fc39.copr7483453 copr_base 140 k R-CRAN-checkmate x86_64 2.3.2-1.fc39.copr7803006 copr_base 743 k R-CRAN-cli x86_64 3.6.3-1.fc39.copr7649835 copr_base 1.3 M R-CRAN-knitr noarch 1.48-1.fc39.copr7716131 copr_base 1.0 M R-CRAN-lbfgsb3c x86_64 2024.3.5-1.fc39.copr8029432 copr_base 137 k R-CRAN-lotri x86_64 1.0.0-1.fc39.copr8032936 copr_base 362 k R-CRAN-magrittr x86_64 2.0.3-1.fc39.copr6279321 copr_base 222 k R-CRAN-minqa x86_64 1.2.8-1.fc39.copr7936838 copr_base 126 k R-CRAN-n1qn1 x86_64 6.0.1.12-1.fc39.copr8029437 copr_base 86 k R-CRAN-nlme x86_64 3.1.166-1.fc39.copr7936970 copr_base 2.4 M R-CRAN-nlmixr2data noarch 2.0.9-1.fc39.copr6978226 copr_base 785 k R-CRAN-rex noarch 1.2.1-1.fc39.copr8100517 copr_base 138 k R-CRAN-rxode2 x86_64 3.0.1-1.fc39.copr8059714 copr_base 3.8 M R-CRAN-symengine x86_64 0.2.6-1.fc39.copr7307052 copr_base 1.8 M R-core x86_64 4.3.3-2.fc39 updates 64 M R-devel x86_64 4.3.3-2.fc39 updates 10 k Installing dependencies: R-CRAN-MASS x86_64 7.3.60.0.1-1.fc39.copr6895092 copr_base 1.2 M R-CRAN-PreciseSums x86_64 0.7-1.fc39.copr8029450 copr_base 48 k R-CRAN-R6 noarch 2.5.1-1.fc39.copr6279323 copr_base 96 k R-CRAN-RApiSerialize x86_64 0.1.4-1.fc39.copr8089098 copr_base 29 k R-CRAN-RColorBrewer noarch 1.1.3-1.fc39.copr6279333 copr_base 65 k R-CRAN-RcppParallel x86_64 5.1.9-1.fc39.copr7936852 copr_base 140 k R-CRAN-cachem x86_64 1.1.0-1.fc39.copr7452047 copr_base 82 k R-CRAN-colorspace x86_64 2.1.1-1.fc39.copr7795131 copr_base 2.5 M R-CRAN-crayon noarch 1.5.3-1.fc39.copr7633037 copr_base 181 k R-CRAN-data.table x86_64 1.16.2-1.fc39.copr8128145 copr_base 2.2 M R-CRAN-digest x86_64 0.6.37-1.fc39.copr7936834 copr_base 229 k R-CRAN-dparser x86_64 1.3.1.13-1.fc39.copr8168029 copr_base 347 k R-CRAN-evaluate noarch 1.0.1-1.fc39.copr8128148 copr_base 116 k R-CRAN-fansi x86_64 1.0.6-1.fc39.copr6735917 copr_base 339 k R-CRAN-farver x86_64 2.1.2-1.fc39.copr7442181 copr_base 1.3 M R-CRAN-fastmap x86_64 1.2.0-1.fc39.copr7447859 copr_base 79 k R-CRAN-ggplot2 noarch 3.5.1-1.fc39.copr7342639 copr_base 4.8 M R-CRAN-glue x86_64 1.8.0-1.fc39.copr8094211 copr_base 172 k R-CRAN-gtable noarch 0.3.5-1.fc39.copr7338149 copr_base 231 k R-CRAN-highr noarch 0.11-1.fc39.copr7494448 copr_base 49 k R-CRAN-inline noarch 0.3.19-1.fc39.copr6279314 copr_base 147 k R-CRAN-isoband x86_64 0.2.7-1.fc39.copr6280488 copr_base 1.6 M R-CRAN-labeling noarch 0.4.3-1.fc39.copr6354313 copr_base 77 k R-CRAN-lattice x86_64 0.22.6-1.fc39.copr7307082 copr_base 1.4 M R-CRAN-lazyeval x86_64 0.2.2-3.fc39.copr6279311 copr_base 165 k R-CRAN-lifecycle noarch 1.0.4-1.fc39.copr6614518 copr_base 130 k R-CRAN-memoise noarch 2.0.1-1.fc39.copr6285223 copr_base 63 k R-CRAN-mgcv x86_64 1.9.1-1.fc39.copr6775870 copr_base 3.3 M R-CRAN-munsell noarch 0.5.1-1.fc39.copr7306785 copr_base 251 k R-CRAN-numDeriv noarch 2016.8.1.1-3.fc39.copr6279422 copr_base 128 k R-CRAN-pillar noarch 1.9.0-1.fc39.copr6286818 copr_base 626 k R-CRAN-pkgconfig noarch 2.0.3-3.fc39.copr6279322 copr_base 30 k R-CRAN-qs x86_64 0.27.2-1.fc39.copr8099906 copr_base 1.4 M R-CRAN-rlang x86_64 1.1.4-1.fc39.copr7531082 copr_base 1.6 M R-CRAN-rxode2ll x86_64 2.0.11-1.fc39.copr7480751 copr_base 187 k R-CRAN-scales noarch 1.3.0-1.fc39.copr6704012 copr_base 707 k R-CRAN-stringfish x86_64 0.16.0-1.fc39.copr6704019 copr_base 411 k R-CRAN-sys x86_64 3.4.3-1.fc39.copr8109592 copr_base 57 k R-CRAN-tibble x86_64 3.2.1-1.fc39.copr6288598 copr_base 632 k R-CRAN-utf8 x86_64 1.2.4-1.fc39.copr6555966 copr_base 150 k R-CRAN-vctrs x86_64 0.6.5-1.fc39.copr6715464 copr_base 1.3 M R-CRAN-viridisLite noarch 0.4.2-1.fc39.copr6279312 copr_base 1.2 M R-CRAN-withr noarch 3.0.1-1.fc39.copr7810684 copr_base 246 k R-CRAN-xfun x86_64 0.48-1.fc39.copr8106823 copr_base 598 k R-CRAN-yaml x86_64 2.3.10-1.fc39.copr7795167 copr_base 124 k R-core-devel x86_64 4.3.3-2.fc39 updates 93 k R-java x86_64 4.3.3-2.fc39 updates 11 k R-java-devel x86_64 4.3.3-2.fc39 updates 10 k R-littler x86_64 0.3.19-1.fc39 updates 76 k R-rpm-macros noarch 1.2.1-7.fc39 fedora 11 k abattis-cantarell-vf-fonts noarch 0.301-10.fc39 fedora 121 k alsa-lib x86_64 1.2.12-1.fc39 updates 521 k annobin-docs noarch 12.60-1.fc39 updates 88 k annobin-plugin-gcc x86_64 12.60-1.fc39 updates 965 k avahi-libs x86_64 0.8-24.fc39 fedora 67 k brotli x86_64 1.1.0-1.fc39 fedora 20 k brotli-devel x86_64 1.1.0-1.fc39 fedora 34 k bzip2-devel x86_64 1.0.8-16.fc39 fedora 214 k cairo x86_64 1.18.0-1.fc39 fedora 710 k cmake-filesystem x86_64 3.27.7-1.fc39 fedora 19 k copy-jdk-configs noarch 4.1-3.fc39 fedora 28 k cpp x86_64 13.3.1-3.fc39 updates 11 M crypto-policies-scripts noarch 20231204-1.git1e3a2e4.fc39 updates 117 k cups-libs x86_64 1:2.4.10-7.fc39 updates 268 k dbus-libs x86_64 1:1.14.10-1.fc39 fedora 156 k default-fonts-core-sans noarch 4.0-9.fc39 fedora 32 k desktop-file-utils x86_64 0.26-9.fc39 fedora 72 k emacs-filesystem noarch 1:29.4-2.fc39 updates 7.3 k expat x86_64 2.6.3-1.fc39 updates 114 k flexiblas x86_64 3.4.4-1.fc39 updates 25 k flexiblas-devel x86_64 3.4.4-1.fc39 updates 121 k flexiblas-netlib x86_64 3.4.4-1.fc39 updates 3.1 M flexiblas-netlib64 x86_64 3.4.4-1.fc39 updates 3.0 M flexiblas-openblas-openmp x86_64 3.4.4-1.fc39 updates 17 k flexiblas-openblas-openmp64 x86_64 3.4.4-1.fc39 updates 17 k fontconfig x86_64 2.14.2-6.fc39 updates 296 k fontconfig-devel x86_64 2.14.2-6.fc39 updates 164 k fonts-filesystem noarch 1:2.0.5-12.fc39 fedora 8.2 k freetype x86_64 2.13.1-2.fc39 fedora 414 k freetype-devel x86_64 2.13.1-2.fc39 fedora 950 k fribidi x86_64 1.0.13-2.fc39 fedora 91 k gc x86_64 8.2.2-4.fc39 fedora 110 k gcc x86_64 13.3.1-3.fc39 updates 34 M gcc-c++ x86_64 13.3.1-3.fc39 updates 13 M gcc-gfortran x86_64 13.3.1-3.fc39 updates 12 M gcc-plugin-annobin x86_64 13.3.1-3.fc39 updates 58 k gettext x86_64 0.22-2.fc39 fedora 1.1 M gettext-envsubst x86_64 0.22-2.fc39 fedora 36 k gettext-libs x86_64 0.22-2.fc39 fedora 328 k gettext-runtime x86_64 0.22-2.fc39 fedora 120 k glib2 x86_64 2.78.6-1.fc39 updates 2.8 M glib2-devel x86_64 2.78.6-1.fc39 updates 594 k glibc-devel x86_64 2.38-18.fc39 updates 86 k glibc-headers-x86 noarch 2.38-18.fc39 updates 571 k gnutls x86_64 3.8.6-1.fc39 updates 1.1 M google-noto-fonts-common noarch 20240101-1.fc39 updates 17 k google-noto-sans-vf-fonts noarch 20240101-1.fc39 updates 593 k graphite2 x86_64 1.3.14-12.fc39 fedora 95 k graphite2-devel x86_64 1.3.14-12.fc39 fedora 20 k guile22 x86_64 2.2.7-9.fc39 fedora 6.5 M harfbuzz x86_64 8.2.1-2.fc39 fedora 975 k harfbuzz-devel x86_64 8.2.1-2.fc39 fedora 450 k harfbuzz-icu x86_64 8.2.1-2.fc39 fedora 17 k java-21-openjdk x86_64 1:21.0.4.0.7-2.fc39 updates 426 k java-21-openjdk-devel x86_64 1:21.0.4.0.7-2.fc39 updates 5.0 M java-21-openjdk-headless x86_64 1:21.0.4.0.7-2.fc39 updates 48 M javapackages-filesystem noarch 6.1.0-10.fc39 fedora 12 k jbigkit-libs x86_64 2.1-26.fc39 fedora 53 k kernel-headers x86_64 6.11.3-100.fc39 updates 1.6 M libICE x86_64 1.0.10-11.fc39 fedora 70 k libRmath x86_64 4.3.3-2.fc39 updates 121 k libRmath-devel x86_64 4.3.3-2.fc39 updates 16 k libSM x86_64 1.2.3-13.fc39 fedora 41 k libX11 x86_64 1.8.9-1.fc39 updates 650 k libX11-common noarch 1.8.9-1.fc39 updates 176 k libX11-devel x86_64 1.8.9-1.fc39 updates 1.0 M libX11-xcb x86_64 1.8.9-1.fc39 updates 12 k libXau x86_64 1.0.11-3.fc39 fedora 31 k libXau-devel x86_64 1.0.11-3.fc39 fedora 14 k libXcomposite x86_64 0.4.5-10.fc39 fedora 23 k libXext x86_64 1.3.5-3.fc39 fedora 39 k libXft x86_64 2.3.8-3.fc39 fedora 72 k libXft-devel x86_64 2.3.8-3.fc39 fedora 50 k libXi x86_64 1.8.1-2.fc39 fedora 40 k libXmu x86_64 1.1.4-3.fc39 fedora 76 k libXrender x86_64 0.9.11-3.fc39 fedora 27 k libXrender-devel x86_64 0.9.11-3.fc39 fedora 19 k libXt x86_64 1.2.1-5.fc39 fedora 178 k libXtst x86_64 1.2.4-3.fc39 fedora 20 k libb2 x86_64 0.98.1-9.fc39 fedora 25 k libblkid-devel x86_64 2.39.4-1.fc39 updates 18 k libdatrie x86_64 0.2.13-7.fc39 fedora 32 k libffi-devel x86_64 3.4.4-4.fc39 fedora 29 k libfontenc x86_64 1.1.6-3.fc39 fedora 32 k libgfortran x86_64 13.3.1-3.fc39 updates 909 k libicu x86_64 73.2-2.fc39 fedora 11 M libicu-devel x86_64 73.2-2.fc39 fedora 924 k libjpeg-turbo x86_64 2.1.4-3.fc39 fedora 183 k liblerc x86_64 4.0.0-4.fc39 fedora 201 k libmount-devel x86_64 2.39.4-1.fc39 updates 18 k libmpc x86_64 1.3.1-3.fc39 fedora 70 k libpng x86_64 2:1.6.37-15.fc39 fedora 119 k libpng-devel x86_64 2:1.6.37-15.fc39 fedora 291 k libquadmath x86_64 13.3.1-3.fc39 updates 205 k libquadmath-devel x86_64 13.3.1-3.fc39 updates 47 k libselinux-devel x86_64 3.5-5.fc39 fedora 151 k libsepol-devel x86_64 3.5-2.fc39 fedora 49 k libstdc++-devel x86_64 13.3.1-3.fc39 updates 2.6 M libthai x86_64 0.1.29-6.fc39 fedora 213 k libtiff x86_64 4.4.0-8.fc39 fedora 202 k libtirpc-devel x86_64 1.3.5-0.fc39 updates 125 k libwebp x86_64 1.3.2-2.fc39 fedora 284 k libxcb x86_64 1.13.1-12.fc39 fedora 233 k libxcb-devel x86_64 1.13.1-12.fc39 fedora 1.4 M libxcrypt-devel x86_64 4.4.36-2.fc39 fedora 30 k libxml2-devel x86_64 2.10.4-3.fc39 fedora 527 k lksctp-tools x86_64 1.0.20-1.fc39 updates 97 k lua x86_64 5.4.6-3.fc39 fedora 191 k lua-posix x86_64 36.2.1-3.fc39 fedora 143 k make x86_64 1:4.4.1-2.fc39 fedora 589 k mkfontscale x86_64 1.2.2-4.fc39 fedora 32 k mpdecimal x86_64 2.5.1-7.fc39 fedora 89 k nettle x86_64 3.9.1-2.fc39 fedora 425 k nspr x86_64 4.35.0-23.fc39 updates 136 k nss x86_64 3.104.0-1.fc39 updates 707 k nss-softokn x86_64 3.104.0-1.fc39 updates 421 k nss-softokn-freebl x86_64 3.104.0-1.fc39 updates 300 k nss-sysinit x86_64 3.104.0-1.fc39 updates 18 k nss-util x86_64 3.104.0-1.fc39 updates 88 k openblas x86_64 0.3.21-6.fc39 fedora 35 k openblas-openmp x86_64 0.3.21-6.fc39 fedora 4.9 M openblas-openmp64 x86_64 0.3.21-6.fc39 fedora 4.8 M pango x86_64 1.51.0-1.fc39 fedora 343 k pcre2-devel x86_64 10.42-1.fc39.2 fedora 505 k pcre2-utf16 x86_64 10.42-1.fc39.2 fedora 212 k pcre2-utf32 x86_64 10.42-1.fc39.2 fedora 200 k pixman x86_64 0.42.2-2.fc39 fedora 288 k python-pip-wheel noarch 23.2.1-2.fc39 updates 1.5 M python3 x86_64 3.12.7-1.fc39 updates 28 k python3-libs x86_64 3.12.7-1.fc39 updates 9.2 M python3-setuptools noarch 67.7.2-8.fc39 updates 1.5 M sysprof-capture-devel x86_64 45.1-1.fc39 updates 59 k tbb x86_64 2020.3-20.fc39 fedora 169 k tbb-devel x86_64 2020.3-20.fc39 fedora 335 k tcl x86_64 1:8.6.12-5.fc39 fedora 1.1 M tcl-devel x86_64 1:8.6.12-5.fc39 fedora 169 k tk x86_64 1:8.6.12-5.fc39 fedora 1.6 M tk-devel x86_64 1:8.6.12-5.fc39 fedora 537 k tre x86_64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 43 k tre-common noarch 0.8.0-41.20140228gitc2f5d13.fc39 fedora 31 k tre-devel x86_64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 12 k ttmkfdir x86_64 3.0.9-69.fc39 fedora 56 k tzdata noarch 2024a-2.fc39 updates 715 k tzdata-java noarch 2024a-2.fc39 updates 208 k xdg-utils noarch 1.1.3-15.fc39 fedora 77 k xml-common noarch 0.6.3-61.fc39 fedora 31 k xorg-x11-fonts-Type1 noarch 7.5-36.fc39 fedora 504 k xorg-x11-proto-devel noarch 2023.2-2.fc39 fedora 298 k xz-devel x86_64 5.4.4-1.fc39 fedora 66 k zlib-devel x86_64 1.2.13-4.fc39 fedora 45 k Transaction Summary ========================================================================================== Install 221 Packages Total download size: 332 M Installed size: 1.1 G Downloading Packages: (1/221): R-CRAN-MASS-7.3.60.0.1-1.fc39.copr6895 8.2 MB/s | 1.2 MB 00:00 (2/221): R-CRAN-Matrix-1.6.5-1.fc39.copr6886765 19 MB/s | 4.1 MB 00:00 (3/221): R-CRAN-PreciseSums-0.7-1.fc39.copr8029 661 kB/s | 48 kB 00:00 (4/221): R-CRAN-R6-2.5.1-1.fc39.copr6279323.noa 937 kB/s | 96 kB 00:00 (5/221): R-CRAN-BH-1.84.0.0-1.fc39.copr6880886. 28 MB/s | 9.8 MB 00:00 (6/221): R-CRAN-RApiSerialize-0.1.4-1.fc39.copr 228 kB/s | 29 kB 00:00 (7/221): R-CRAN-RColorBrewer-1.1.3-1.fc39.copr6 2.5 MB/s | 65 kB 00:00 (8/221): R-CRAN-RcppArmadillo-14.0.2.1-1.fc39.c 17 MB/s | 918 kB 00:00 (9/221): R-CRAN-Rcpp-1.0.13-1.fc39.copr7745410. 34 MB/s | 2.0 MB 00:00 (10/221): R-CRAN-RcppEigen-0.3.4.0.2-1.fc39.cop 19 MB/s | 1.4 MB 00:00 (11/221): R-CRAN-backports-1.5.0-1.fc39.copr748 7.3 MB/s | 140 kB 00:00 (12/221): R-CRAN-RcppParallel-5.1.9-1.fc39.copr 5.8 MB/s | 140 kB 00:00 (13/221): R-CRAN-cachem-1.1.0-1.fc39.copr745204 5.1 MB/s | 82 kB 00:00 (14/221): R-CRAN-checkmate-2.3.2-1.fc39.copr780 30 MB/s | 743 kB 00:00 (15/221): R-CRAN-cli-3.6.3-1.fc39.copr7649835.x 31 MB/s | 1.3 MB 00:00 (16/221): R-CRAN-colorspace-2.1.1-1.fc39.copr77 20 MB/s | 2.5 MB 00:00 (17/221): R-CRAN-crayon-1.5.3-1.fc39.copr763303 1.6 MB/s | 181 kB 00:00 (18/221): R-CRAN-data.table-1.16.2-1.fc39.copr8 22 MB/s | 2.2 MB 00:00 (19/221): R-CRAN-digest-0.6.37-1.fc39.copr79368 19 MB/s | 229 kB 00:00 (20/221): R-CRAN-evaluate-1.0.1-1.fc39.copr8128 11 MB/s | 116 kB 00:00 (21/221): R-CRAN-fansi-1.0.6-1.fc39.copr6735917 23 MB/s | 339 kB 00:00 (22/221): R-CRAN-dparser-1.3.1.13-1.fc39.copr81 11 MB/s | 347 kB 00:00 (23/221): R-CRAN-farver-2.1.2-1.fc39.copr744218 43 MB/s | 1.3 MB 00:00 (24/221): R-CRAN-fastmap-1.2.0-1.fc39.copr74478 3.2 MB/s | 79 kB 00:00 (25/221): R-CRAN-glue-1.8.0-1.fc39.copr8094211. 2.7 MB/s | 172 kB 00:00 (26/221): R-CRAN-ggplot2-3.5.1-1.fc39.copr73426 54 MB/s | 4.8 MB 00:00 (27/221): R-CRAN-gtable-0.3.5-1.fc39.copr733814 3.3 MB/s | 231 kB 00:00 (28/221): R-CRAN-highr-0.11-1.fc39.copr7494448. 4.9 MB/s | 49 kB 00:00 (29/221): R-CRAN-inline-0.3.19-1.fc39.copr62793 5.3 MB/s | 147 kB 00:00 (30/221): R-CRAN-isoband-0.2.7-1.fc39.copr62804 38 MB/s | 1.6 MB 00:00 (31/221): R-CRAN-knitr-1.48-1.fc39.copr7716131. 23 MB/s | 1.0 MB 00:00 (32/221): R-CRAN-labeling-0.4.3-1.fc39.copr6354 3.5 MB/s | 77 kB 00:00 (33/221): R-CRAN-lattice-0.22.6-1.fc39.copr7307 47 MB/s | 1.4 MB 00:00 (34/221): R-CRAN-lazyeval-0.2.2-3.fc39.copr6279 6.5 MB/s | 165 kB 00:00 (35/221): R-CRAN-lifecycle-1.0.4-1.fc39.copr661 11 MB/s | 130 kB 00:00 (36/221): R-CRAN-magrittr-2.0.3-1.fc39.copr6279 19 MB/s | 222 kB 00:00 (37/221): R-CRAN-memoise-2.0.1-1.fc39.copr62852 5.7 MB/s | 63 kB 00:00 (38/221): R-CRAN-lbfgsb3c-2024.3.5-1.fc39.copr8 1.9 MB/s | 137 kB 00:00 (39/221): R-CRAN-lotri-1.0.0-1.fc39.copr8032936 4.5 MB/s | 362 kB 00:00 (40/221): R-CRAN-minqa-1.2.8-1.fc39.copr7936838 2.7 MB/s | 126 kB 00:00 (41/221): R-CRAN-mgcv-1.9.1-1.fc39.copr6775870. 51 MB/s | 3.3 MB 00:00 (42/221): R-CRAN-munsell-0.5.1-1.fc39.copr73067 12 MB/s | 251 kB 00:00 (43/221): R-CRAN-nlme-3.1.166-1.fc39.copr793697 55 MB/s | 2.4 MB 00:00 (44/221): R-CRAN-n1qn1-6.0.1.12-1.fc39.copr8029 1.6 MB/s | 86 kB 00:00 (45/221): R-CRAN-numDeriv-2016.8.1.1-3.fc39.cop 9.8 MB/s | 128 kB 00:00 (46/221): R-CRAN-pillar-1.9.0-1.fc39.copr628681 26 MB/s | 626 kB 00:00 (47/221): R-CRAN-pkgconfig-2.0.3-3.fc39.copr627 1.3 MB/s | 30 kB 00:00 (48/221): R-CRAN-nlmixr2data-2.0.9-1.fc39.copr6 9.5 MB/s | 785 kB 00:00 (49/221): R-CRAN-rlang-1.1.4-1.fc39.copr7531082 50 MB/s | 1.6 MB 00:00 (50/221): R-CRAN-rex-1.2.1-1.fc39.copr8100517.n 2.2 MB/s | 138 kB 00:00 (51/221): R-CRAN-qs-0.27.2-1.fc39.copr8099906.x 15 MB/s | 1.4 MB 00:00 (52/221): R-CRAN-scales-1.3.0-1.fc39.copr670401 26 MB/s | 707 kB 00:00 (53/221): R-CRAN-rxode2ll-2.0.11-1.fc39.copr748 1.7 MB/s | 187 kB 00:00 (54/221): R-CRAN-rxode2-3.0.1-1.fc39.copr805971 26 MB/s | 3.8 MB 00:00 (55/221): R-CRAN-stringfish-0.16.0-1.fc39.copr6 5.4 MB/s | 411 kB 00:00 (56/221): R-CRAN-sys-3.4.3-1.fc39.copr8109592.x 5.6 MB/s | 57 kB 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Running transaction test Transaction test succeeded. Running transaction Running scriptlet: copy-jdk-configs-4.1-3.fc39.noarch 1/1 Running scriptlet: java-21-openjdk-headless-1:21.0.4.0.7-2.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgfortran-13.3.1-3.fc39.x86_64 1/221 Installing : zlib-devel-1.2.13-4.fc39.x86_64 2/221 Installing : nspr-4.35.0-23.fc39.x86_64 3/221 Installing : tbb-2020.3-20.fc39.x86_64 4/221 Installing : nss-util-3.104.0-1.fc39.x86_64 5/221 Installing : libquadmath-13.3.1-3.fc39.x86_64 6/221 Installing : xorg-x11-proto-devel-2023.2-2.fc39.noarch 7/221 Installing : libpng-2:1.6.37-15.fc39.x86_64 8/221 Installing : libmpc-1.3.1-3.fc39.x86_64 9/221 Installing : tcl-1:8.6.12-5.fc39.x86_64 10/221 Installing : libicu-73.2-2.fc39.x86_64 11/221 Installing : fonts-filesystem-1:2.0.5-12.fc39.noarch 12/221 Installing : libicu-devel-73.2-2.fc39.x86_64 13/221 Installing : tcl-devel-1:8.6.12-5.fc39.x86_64 14/221 Installing : libRmath-4.3.3-2.fc39.x86_64 15/221 Installing : xz-devel-5.4.4-1.fc39.x86_64 16/221 Installing : 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sysprof-capture-devel-45.1-1.fc39.x86_64 219/221 Verifying : tzdata-2024a-2.fc39.noarch 220/221 Verifying : tzdata-java-2024a-2.fc39.noarch 221/221 Installed products updated. Installed: R-CRAN-BH-1.84.0.0-1.fc39.copr6880886.noarch R-CRAN-MASS-7.3.60.0.1-1.fc39.copr6895092.x86_64 R-CRAN-Matrix-1.6.5-1.fc39.copr6886765.x86_64 R-CRAN-PreciseSums-0.7-1.fc39.copr8029450.x86_64 R-CRAN-R6-2.5.1-1.fc39.copr6279323.noarch R-CRAN-RApiSerialize-0.1.4-1.fc39.copr8089098.x86_64 R-CRAN-RColorBrewer-1.1.3-1.fc39.copr6279333.noarch R-CRAN-Rcpp-1.0.13-1.fc39.copr7745410.x86_64 R-CRAN-RcppArmadillo-14.0.2.1-1.fc39.copr8016517.x86_64 R-CRAN-RcppEigen-0.3.4.0.2-1.fc39.copr8100507.x86_64 R-CRAN-RcppParallel-5.1.9-1.fc39.copr7936852.x86_64 R-CRAN-backports-1.5.0-1.fc39.copr7483453.x86_64 R-CRAN-cachem-1.1.0-1.fc39.copr7452047.x86_64 R-CRAN-checkmate-2.3.2-1.fc39.copr7803006.x86_64 R-CRAN-cli-3.6.3-1.fc39.copr7649835.x86_64 R-CRAN-colorspace-2.1.1-1.fc39.copr7795131.x86_64 R-CRAN-crayon-1.5.3-1.fc39.copr7633037.noarch R-CRAN-data.table-1.16.2-1.fc39.copr8128145.x86_64 R-CRAN-digest-0.6.37-1.fc39.copr7936834.x86_64 R-CRAN-dparser-1.3.1.13-1.fc39.copr8168029.x86_64 R-CRAN-evaluate-1.0.1-1.fc39.copr8128148.noarch R-CRAN-fansi-1.0.6-1.fc39.copr6735917.x86_64 R-CRAN-farver-2.1.2-1.fc39.copr7442181.x86_64 R-CRAN-fastmap-1.2.0-1.fc39.copr7447859.x86_64 R-CRAN-ggplot2-3.5.1-1.fc39.copr7342639.noarch R-CRAN-glue-1.8.0-1.fc39.copr8094211.x86_64 R-CRAN-gtable-0.3.5-1.fc39.copr7338149.noarch R-CRAN-highr-0.11-1.fc39.copr7494448.noarch R-CRAN-inline-0.3.19-1.fc39.copr6279314.noarch R-CRAN-isoband-0.2.7-1.fc39.copr6280488.x86_64 R-CRAN-knitr-1.48-1.fc39.copr7716131.noarch R-CRAN-labeling-0.4.3-1.fc39.copr6354313.noarch R-CRAN-lattice-0.22.6-1.fc39.copr7307082.x86_64 R-CRAN-lazyeval-0.2.2-3.fc39.copr6279311.x86_64 R-CRAN-lbfgsb3c-2024.3.5-1.fc39.copr8029432.x86_64 R-CRAN-lifecycle-1.0.4-1.fc39.copr6614518.noarch R-CRAN-lotri-1.0.0-1.fc39.copr8032936.x86_64 R-CRAN-magrittr-2.0.3-1.fc39.copr6279321.x86_64 R-CRAN-memoise-2.0.1-1.fc39.copr6285223.noarch R-CRAN-mgcv-1.9.1-1.fc39.copr6775870.x86_64 R-CRAN-minqa-1.2.8-1.fc39.copr7936838.x86_64 R-CRAN-munsell-0.5.1-1.fc39.copr7306785.noarch R-CRAN-n1qn1-6.0.1.12-1.fc39.copr8029437.x86_64 R-CRAN-nlme-3.1.166-1.fc39.copr7936970.x86_64 R-CRAN-nlmixr2data-2.0.9-1.fc39.copr6978226.noarch R-CRAN-numDeriv-2016.8.1.1-3.fc39.copr6279422.noarch R-CRAN-pillar-1.9.0-1.fc39.copr6286818.noarch R-CRAN-pkgconfig-2.0.3-3.fc39.copr6279322.noarch R-CRAN-qs-0.27.2-1.fc39.copr8099906.x86_64 R-CRAN-rex-1.2.1-1.fc39.copr8100517.noarch R-CRAN-rlang-1.1.4-1.fc39.copr7531082.x86_64 R-CRAN-rxode2-3.0.1-1.fc39.copr8059714.x86_64 R-CRAN-rxode2ll-2.0.11-1.fc39.copr7480751.x86_64 R-CRAN-scales-1.3.0-1.fc39.copr6704012.noarch R-CRAN-stringfish-0.16.0-1.fc39.copr6704019.x86_64 R-CRAN-symengine-0.2.6-1.fc39.copr7307052.x86_64 R-CRAN-sys-3.4.3-1.fc39.copr8109592.x86_64 R-CRAN-tibble-3.2.1-1.fc39.copr6288598.x86_64 R-CRAN-utf8-1.2.4-1.fc39.copr6555966.x86_64 R-CRAN-vctrs-0.6.5-1.fc39.copr6715464.x86_64 R-CRAN-viridisLite-0.4.2-1.fc39.copr6279312.noarch R-CRAN-withr-3.0.1-1.fc39.copr7810684.noarch R-CRAN-xfun-0.48-1.fc39.copr8106823.x86_64 R-CRAN-yaml-2.3.10-1.fc39.copr7795167.x86_64 R-core-4.3.3-2.fc39.x86_64 R-core-devel-4.3.3-2.fc39.x86_64 R-devel-4.3.3-2.fc39.x86_64 R-java-4.3.3-2.fc39.x86_64 R-java-devel-4.3.3-2.fc39.x86_64 R-littler-0.3.19-1.fc39.x86_64 R-rpm-macros-1.2.1-7.fc39.noarch abattis-cantarell-vf-fonts-0.301-10.fc39.noarch alsa-lib-1.2.12-1.fc39.x86_64 annobin-docs-12.60-1.fc39.noarch annobin-plugin-gcc-12.60-1.fc39.x86_64 avahi-libs-0.8-24.fc39.x86_64 brotli-1.1.0-1.fc39.x86_64 brotli-devel-1.1.0-1.fc39.x86_64 bzip2-devel-1.0.8-16.fc39.x86_64 cairo-1.18.0-1.fc39.x86_64 cmake-filesystem-3.27.7-1.fc39.x86_64 copy-jdk-configs-4.1-3.fc39.noarch cpp-13.3.1-3.fc39.x86_64 crypto-policies-scripts-20231204-1.git1e3a2e4.fc39.noarch cups-libs-1:2.4.10-7.fc39.x86_64 dbus-libs-1:1.14.10-1.fc39.x86_64 default-fonts-core-sans-4.0-9.fc39.noarch desktop-file-utils-0.26-9.fc39.x86_64 emacs-filesystem-1:29.4-2.fc39.noarch expat-2.6.3-1.fc39.x86_64 flexiblas-3.4.4-1.fc39.x86_64 flexiblas-devel-3.4.4-1.fc39.x86_64 flexiblas-netlib-3.4.4-1.fc39.x86_64 flexiblas-netlib64-3.4.4-1.fc39.x86_64 flexiblas-openblas-openmp-3.4.4-1.fc39.x86_64 flexiblas-openblas-openmp64-3.4.4-1.fc39.x86_64 fontconfig-2.14.2-6.fc39.x86_64 fontconfig-devel-2.14.2-6.fc39.x86_64 fonts-filesystem-1:2.0.5-12.fc39.noarch freetype-2.13.1-2.fc39.x86_64 freetype-devel-2.13.1-2.fc39.x86_64 fribidi-1.0.13-2.fc39.x86_64 gc-8.2.2-4.fc39.x86_64 gcc-13.3.1-3.fc39.x86_64 gcc-c++-13.3.1-3.fc39.x86_64 gcc-gfortran-13.3.1-3.fc39.x86_64 gcc-plugin-annobin-13.3.1-3.fc39.x86_64 gettext-0.22-2.fc39.x86_64 gettext-envsubst-0.22-2.fc39.x86_64 gettext-libs-0.22-2.fc39.x86_64 gettext-runtime-0.22-2.fc39.x86_64 glib2-2.78.6-1.fc39.x86_64 glib2-devel-2.78.6-1.fc39.x86_64 glibc-devel-2.38-18.fc39.x86_64 glibc-headers-x86-2.38-18.fc39.noarch gnutls-3.8.6-1.fc39.x86_64 google-noto-fonts-common-20240101-1.fc39.noarch google-noto-sans-vf-fonts-20240101-1.fc39.noarch graphite2-1.3.14-12.fc39.x86_64 graphite2-devel-1.3.14-12.fc39.x86_64 guile22-2.2.7-9.fc39.x86_64 harfbuzz-8.2.1-2.fc39.x86_64 harfbuzz-devel-8.2.1-2.fc39.x86_64 harfbuzz-icu-8.2.1-2.fc39.x86_64 java-21-openjdk-1:21.0.4.0.7-2.fc39.x86_64 java-21-openjdk-devel-1:21.0.4.0.7-2.fc39.x86_64 java-21-openjdk-headless-1:21.0.4.0.7-2.fc39.x86_64 javapackages-filesystem-6.1.0-10.fc39.noarch jbigkit-libs-2.1-26.fc39.x86_64 kernel-headers-6.11.3-100.fc39.x86_64 libICE-1.0.10-11.fc39.x86_64 libRmath-4.3.3-2.fc39.x86_64 libRmath-devel-4.3.3-2.fc39.x86_64 libSM-1.2.3-13.fc39.x86_64 libX11-1.8.9-1.fc39.x86_64 libX11-common-1.8.9-1.fc39.noarch libX11-devel-1.8.9-1.fc39.x86_64 libX11-xcb-1.8.9-1.fc39.x86_64 libXau-1.0.11-3.fc39.x86_64 libXau-devel-1.0.11-3.fc39.x86_64 libXcomposite-0.4.5-10.fc39.x86_64 libXext-1.3.5-3.fc39.x86_64 libXft-2.3.8-3.fc39.x86_64 libXft-devel-2.3.8-3.fc39.x86_64 libXi-1.8.1-2.fc39.x86_64 libXmu-1.1.4-3.fc39.x86_64 libXrender-0.9.11-3.fc39.x86_64 libXrender-devel-0.9.11-3.fc39.x86_64 libXt-1.2.1-5.fc39.x86_64 libXtst-1.2.4-3.fc39.x86_64 libb2-0.98.1-9.fc39.x86_64 libblkid-devel-2.39.4-1.fc39.x86_64 libdatrie-0.2.13-7.fc39.x86_64 libffi-devel-3.4.4-4.fc39.x86_64 libfontenc-1.1.6-3.fc39.x86_64 libgfortran-13.3.1-3.fc39.x86_64 libicu-73.2-2.fc39.x86_64 libicu-devel-73.2-2.fc39.x86_64 libjpeg-turbo-2.1.4-3.fc39.x86_64 liblerc-4.0.0-4.fc39.x86_64 libmount-devel-2.39.4-1.fc39.x86_64 libmpc-1.3.1-3.fc39.x86_64 libpng-2:1.6.37-15.fc39.x86_64 libpng-devel-2:1.6.37-15.fc39.x86_64 libquadmath-13.3.1-3.fc39.x86_64 libquadmath-devel-13.3.1-3.fc39.x86_64 libselinux-devel-3.5-5.fc39.x86_64 libsepol-devel-3.5-2.fc39.x86_64 libstdc++-devel-13.3.1-3.fc39.x86_64 libthai-0.1.29-6.fc39.x86_64 libtiff-4.4.0-8.fc39.x86_64 libtirpc-devel-1.3.5-0.fc39.x86_64 libwebp-1.3.2-2.fc39.x86_64 libxcb-1.13.1-12.fc39.x86_64 libxcb-devel-1.13.1-12.fc39.x86_64 libxcrypt-devel-4.4.36-2.fc39.x86_64 libxml2-devel-2.10.4-3.fc39.x86_64 lksctp-tools-1.0.20-1.fc39.x86_64 lua-5.4.6-3.fc39.x86_64 lua-posix-36.2.1-3.fc39.x86_64 make-1:4.4.1-2.fc39.x86_64 mkfontscale-1.2.2-4.fc39.x86_64 mpdecimal-2.5.1-7.fc39.x86_64 nettle-3.9.1-2.fc39.x86_64 nspr-4.35.0-23.fc39.x86_64 nss-3.104.0-1.fc39.x86_64 nss-softokn-3.104.0-1.fc39.x86_64 nss-softokn-freebl-3.104.0-1.fc39.x86_64 nss-sysinit-3.104.0-1.fc39.x86_64 nss-util-3.104.0-1.fc39.x86_64 openblas-0.3.21-6.fc39.x86_64 openblas-openmp-0.3.21-6.fc39.x86_64 openblas-openmp64-0.3.21-6.fc39.x86_64 pango-1.51.0-1.fc39.x86_64 pcre2-devel-10.42-1.fc39.2.x86_64 pcre2-utf16-10.42-1.fc39.2.x86_64 pcre2-utf32-10.42-1.fc39.2.x86_64 pixman-0.42.2-2.fc39.x86_64 python-pip-wheel-23.2.1-2.fc39.noarch python3-3.12.7-1.fc39.x86_64 python3-libs-3.12.7-1.fc39.x86_64 python3-setuptools-67.7.2-8.fc39.noarch sysprof-capture-devel-45.1-1.fc39.x86_64 tbb-2020.3-20.fc39.x86_64 tbb-devel-2020.3-20.fc39.x86_64 tcl-1:8.6.12-5.fc39.x86_64 tcl-devel-1:8.6.12-5.fc39.x86_64 tk-1:8.6.12-5.fc39.x86_64 tk-devel-1:8.6.12-5.fc39.x86_64 tre-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 tre-common-0.8.0-41.20140228gitc2f5d13.fc39.noarch tre-devel-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 ttmkfdir-3.0.9-69.fc39.x86_64 tzdata-2024a-2.fc39.noarch tzdata-java-2024a-2.fc39.noarch xdg-utils-1.1.3-15.fc39.noarch xml-common-0.6.3-61.fc39.noarch xorg-x11-fonts-Type1-7.5-36.fc39.noarch xorg-x11-proto-devel-2023.2-2.fc39.noarch xz-devel-5.4.4-1.fc39.x86_64 zlib-devel-1.2.13-4.fc39.x86_64 Complete! Finish: build setup for R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.src.rpm Start: rpmbuild R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.iotLIM + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf nlmixr2est + /usr/bin/mkdir -p nlmixr2est + cd nlmixr2est + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/nlmixr2est_3.0.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + rm -rf /builddir/build/BUILD/nlmixr2est-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/nlmixr2est-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d nlmixr2est/src ']' + find nlmixr2est/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';' + '[' -d nlmixr2est/src ']' + find nlmixr2est/src/Makevars.in -type f -exec sed -i s@-g0@@g '{}' ';' + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.zRiNV0 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd nlmixr2est + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.5AlrT1 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.x86_64 ++ dirname /builddir/build/BUILDROOT/R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd nlmixr2est + mkdir -p /builddir/build/BUILDROOT/R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.x86_64/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.x86_64/usr/local/lib/R/library nlmixr2est * installing *source* package ‘nlmixr2est’ ... ** package ‘nlmixr2est’ successfully unpacked and MD5 sums checked ** using staged installation --------[begin src/Makevars]-------- # -*- mode: makefile-gmake -*- ARMA=/usr/local/lib/R/library/RcppArmadillo/include BH=/usr/local/lib/R/library/BH/include RCPP=/usr/local/lib/R/library/Rcpp/include RXP=/usr/local/lib/R/library/rxode2/include CXX_STD = CXX17 PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) $(SHLIB_OPENMP_CXXFLAGS) PKG_CXXFLAGS = -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -isystem"$(BH)" -isystem"$(RCPP)" -isystem"$(ARMA)" -isystem"$(RXP)" $(SHLIB_OPENMP_CXXFLAGS) -DARMA_64BIT_WORD=1 SHLIB_LDFLAGS = $(SHLIB_CXXLDFLAGS) SHLIB_LD = $(SHLIB_CXXLD) SOURCES_C = init.c rprintf.c merge3.c lbfgsR.c utilc.c SOURCES_CPP = uninformativeEtas.cpp nlm.cpp filterNormalLike.cpp inner.cpp shi21.cpp nearPD.cpp censEst.cpp saem.cpp expandNlme.cpp npde.cpp shrink.cpp ires.cpp res.cpp cwres.cpp censResid.cpp cholse.cpp neldermead.cpp resid.cpp slice.cpp RcppExportMod.cpp RcppExports.cpp OBJECTS = $(SOURCES_CPP:.cpp=.o) $(SOURCES_C:.c=.o) all: $(SHLIB) $(SHLIB): $(OBJECTS) --------[end src/Makevars]-------- ** libs using C compiler: ‘gcc (GCC) 13.3.1 20240913 (Red Hat 13.3.1-3)’ using C++ compiler: ‘g++ (GCC) 13.3.1 20240913 (Red Hat 13.3.1-3)’ using C++17 g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/Rcpp/include" -isystem"/usr/local/lib/R/library/RcppArmadillo/include" -isystem"/usr/local/lib/R/library/rxode2/include" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c uninformativeEtas.cpp -o uninformativeEtas.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/Rcpp/include" -isystem"/usr/local/lib/R/library/RcppArmadillo/include" -isystem"/usr/local/lib/R/library/rxode2/include" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c nlm.cpp -o nlm.o nlm.cpp: In function ‘arma::vec nlmSolveF(arma::vec&)’: nlm.cpp:399:7: warning: unused variable ‘cores’ [-Wunused-variable] 399 | int cores = getOpCores(op); | ^~~~~ nlm.cpp: In function ‘arma::mat nlmSolveGrad(arma::vec&)’: nlm.cpp:525:7: warning: unused variable ‘cores’ [-Wunused-variable] 525 | int cores = getOpCores(op); | ^~~~~ nlm.cpp: In function ‘Rcpp::NumericVector solveGradNls(arma::vec&, int)’: nlm.cpp:608:12: warning: unused variable ‘llik’ [-Wunused-variable] 608 | double llik; | ^~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/Rcpp/include" -isystem"/usr/local/lib/R/library/RcppArmadillo/include" -isystem"/usr/local/lib/R/library/rxode2/include" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c filterNormalLike.cpp -o filterNormalLike.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/Rcpp/include" -isystem"/usr/local/lib/R/library/RcppArmadillo/include" -isystem"/usr/local/lib/R/library/rxode2/include" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c inner.cpp -o inner.o inner.cpp: In function ‘void parHistData(Rcpp::Environment, bool)’: inner.cpp:37:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare] 37 | #define min2( a , b ) ( (a) < (b) ? (a) : (b) ) | ~~~~^~~~~ inner.cpp:5849:23: note: in expansion of macro ‘min2’ 5849 | for (i = 0; i < min2(op_focei.npars+1, vals.n_cols); i++){ | ^~~~ inner.cpp:5849:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 5849 | for (i = 0; i < min2(op_focei.npars+1, vals.n_cols); i++){ | ^ inner.cpp: In function ‘nlmixr2Gill83_(Rcpp::Function_Impl, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Environment_Impl, Rcpp::Vector<10, Rcpp::PreserveStorage>, double, int, double, double, bool)’: inner.cpp:4327:13: warning: ‘gillF’ may be used uninitialized [-Wmaybe-uninitialized] 4327 | fN[i] = gillF; inner.cpp:4320:10: note: ‘gillF’ was declared here 4320 | double gillF; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/Rcpp/include" -isystem"/usr/local/lib/R/library/RcppArmadillo/include" -isystem"/usr/local/lib/R/library/rxode2/include" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c shi21.cpp -o shi21.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/Rcpp/include" -isystem"/usr/local/lib/R/library/RcppArmadillo/include" -isystem"/usr/local/lib/R/library/rxode2/include" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c nearPD.cpp -o nearPD.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/Rcpp/include" -isystem"/usr/local/lib/R/library/RcppArmadillo/include" -isystem"/usr/local/lib/R/library/rxode2/include" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c censEst.cpp -o censEst.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/Rcpp/include" -isystem"/usr/local/lib/R/library/RcppArmadillo/include" -isystem"/usr/local/lib/R/library/rxode2/include" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c saem.cpp -o saem.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/Rcpp/include" -isystem"/usr/local/lib/R/library/RcppArmadillo/include" -isystem"/usr/local/lib/R/library/rxode2/include" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c expandNlme.cpp -o expandNlme.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/Rcpp/include" -isystem"/usr/local/lib/R/library/RcppArmadillo/include" -isystem"/usr/local/lib/R/library/rxode2/include" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c npde.cpp -o npde.o npde.cpp: In function ‘void handleCensNpdeCdf(calcNpdeInfoId&, arma::Col&, arma::vec&, int&, bool&, unsigned int, arma::vec&, arma::vec&, unsigned int&, bool&)’: npde.cpp:129:15: warning: variable ‘hi’ set but not used [-Wunused-but-set-variable] 129 | double low, hi, low2, hi2; | ^~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/Rcpp/include" -isystem"/usr/local/lib/R/library/RcppArmadillo/include" -isystem"/usr/local/lib/R/library/rxode2/include" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c shrink.cpp -o shrink.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/Rcpp/include" -isystem"/usr/local/lib/R/library/RcppArmadillo/include" -isystem"/usr/local/lib/R/library/rxode2/include" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ires.cpp -o ires.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/Rcpp/include" -isystem"/usr/local/lib/R/library/RcppArmadillo/include" -isystem"/usr/local/lib/R/library/rxode2/include" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c res.cpp -o res.o res.cpp: In function ‘void calculateDfFull(arma::Col&, arma::mat&, Rcpp::List&, int&, unsigned int&)’: res.cpp:17:7: warning: unused variable ‘idSize’ [-Wunused-variable] 17 | int idSize = ID.size(); | ^~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/Rcpp/include" -isystem"/usr/local/lib/R/library/RcppArmadillo/include" -isystem"/usr/local/lib/R/library/rxode2/include" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c cwres.cpp -o cwres.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/Rcpp/include" -isystem"/usr/local/lib/R/library/RcppArmadillo/include" -isystem"/usr/local/lib/R/library/rxode2/include" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c censResid.cpp -o censResid.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/Rcpp/include" -isystem"/usr/local/lib/R/library/RcppArmadillo/include" -isystem"/usr/local/lib/R/library/rxode2/include" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c cholse.cpp -o cholse.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/Rcpp/include" -isystem"/usr/local/lib/R/library/RcppArmadillo/include" -isystem"/usr/local/lib/R/library/rxode2/include" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c neldermead.cpp -o neldermead.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/Rcpp/include" -isystem"/usr/local/lib/R/library/RcppArmadillo/include" -isystem"/usr/local/lib/R/library/rxode2/include" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c resid.cpp -o resid.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/Rcpp/include" -isystem"/usr/local/lib/R/library/RcppArmadillo/include" -isystem"/usr/local/lib/R/library/rxode2/include" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c slice.cpp -o slice.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/Rcpp/include" -isystem"/usr/local/lib/R/library/RcppArmadillo/include" -isystem"/usr/local/lib/R/library/rxode2/include" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c RcppExportMod.cpp -o RcppExportMod.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -isystem"/usr/local/lib/R/library/BH/include" -isystem"/usr/local/lib/R/library/Rcpp/include" -isystem"/usr/local/lib/R/library/RcppArmadillo/include" -isystem"/usr/local/lib/R/library/rxode2/include" -fopenmp -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c RcppExports.cpp -o RcppExports.o In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:205, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:28, from /usr/local/lib/R/library/RcppEigen/include/RcppEigen.h:25, from ../inst/include/nlmixr2est_RcppExports.h:8, from ../inst/include/nlmixr2est.h:7, from RcppExports.cpp:4: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:174: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:165: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:271: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/SparseCore:37, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Sparse:26, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:29: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c init.c -o init.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rprintf.c -o rprintf.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c merge3.c -o merge3.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c lbfgsR.c -o lbfgsR.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/BH/include' -I'/usr/local/lib/R/library/n1qn1/include' -I'/usr/local/lib/R/library/lbfgsb3c/include' -I'/usr/local/lib/R/library/lotri/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/rxode2/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c utilc.c -o utilc.o g++ -std=gnu++17 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o nlmixr2est.so uninformativeEtas.o nlm.o filterNormalLike.o inner.o shi21.o nearPD.o censEst.o saem.o expandNlme.o npde.o shrink.o ires.o res.o cwres.o censResid.o cholse.o neldermead.o resid.o slice.o RcppExportMod.o RcppExports.o init.o rprintf.o merge3.o lbfgsR.o utilc.o -lflexiblas -lgfortran -lm -lquadmath -fopenmp -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILDROOT/R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.x86_64/usr/local/lib/R/library/00LOCK-nlmixr2est/00new/nlmixr2est/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘nlmixr2est’ finding HTML links ... done addCwres html addNpde html addTable html assertNlmixrFit html assertNlmixrFitData html bobyqaControl html boxCox html cholSE html dot-addPkgNlmixr2 html dot-augPredIpredModel html dot-deparseDifferent html dot-deparseFinal html dot-foceiPreProcessData html dot-nlmFinalizeList html dot-nlmFreeEnv html dot-nlmSetupEnv html dot-nlmixr2estLastPredSimulationInfo html dot-nlmixr2objectNameAssign html dot-nlmixrNlmFunC html dot-nlmixrNlmeFun html dot-nlmixrNlminbFunC html dot-nlmixrNlsData html dot-nlmixrNlsFun html dot-nlmixrNlsFunVal html dot-nlmixrOptimFunC html dot-rxGetDVFTransform html dot-saemDropMuRefFromModel html dot-uiApplyMu2 html dot-uiFinalizeMu2 html foceiControl html foceiFitCpp_ html getBaseSimModelFit html getValidNlmixrControl html lbfgsb3cControl html n1qn1Control html newuoaControl html nlmControl html nlminbControl html nlmixr2 html nlmixr2AllEst html nlmixr2AugPredSolve html nlmixr2CreateOutputFromUi html nlmixr2Est html nlmixr2Gill83 html nlmixr2GradFun html nlmixr2Hess html nlmixr2Keywords html nlmixr2Logo html nlmixr2NlmeControl html nlmixr2Print html nlmixr2Validate html nlmixr2Version html nlmixrAddObjectiveFunctionDataFrame html nlmixrAddTiming html nlmixrCbind html nlmixrClone html nlmixrUpdateObject html nlmixrWithTiming html nlsControl html nmGetDistributionSaemLines html nmNearPD html nmObjGet html nmObjGetControl html nmObjGetData html nmObjGetEstimationModel html nmObjGetFoceiControl html nmObjGetIpredModel html nmObjGetPredOnly html nmObjGetRxSolve html nmObjHandleControlObject html nmObjHandleModelObject html nmObjUiSetCompressed html nmSuppressMsg html nmsimplex html ofv html optimControl html print.saemFit html reexports html residuals.nlmixr2FitData html rxGetDistributionFoceiLines html rxGetDistributionNlmeLines html rxGetDistributionNlsLines html saemControl html setCov html setOfv html sqrtm html summary.saemFit html tableControl html uobyqaControl html vpcNameDataCmts html vpcSim html vpcSimExpand html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nlmixr2est) + test -d nlmixr2est/src + cd nlmixr2est/src + rm -f RcppExportMod.o RcppExports.o censEst.o censResid.o cholse.o cwres.o expandNlme.o filterNormalLike.o init.o inner.o ires.o lbfgsR.o merge3.o nearPD.o neldermead.o nlm.o npde.o res.o resid.o rprintf.o saem.o shi21.o shrink.o slice.o uninformativeEtas.o utilc.o nlmixr2est.so + rm -f /builddir/build/BUILDROOT/R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.x86_64/usr/local/lib/R/library/R.css + find /builddir/build/BUILDROOT/R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.x86_64/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILDROOT/R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.x86_64@@g '{}' ';' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 3.0.1-1.fc39.copr8168052 --unique-debug-suffix -3.0.1-1.fc39.copr8168052.x86_64 --unique-debug-src-base R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/nlmixr2est find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.x86_64 1030 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.x86_64 Provides: R-CRAN-nlmixr2est = 3.0.1-1.fc39.copr8168052 R-CRAN-nlmixr2est(x86-64) = 3.0.1-1.fc39.copr8168052 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: R-CRAN-nlmixr2est-debugsource-3.0.1-1.fc39.copr8168052.x86_64 Provides: R-CRAN-nlmixr2est-debugsource = 3.0.1-1.fc39.copr8168052 R-CRAN-nlmixr2est-debugsource(x86-64) = 3.0.1-1.fc39.copr8168052 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-CRAN-nlmixr2est-debuginfo-3.0.1-1.fc39.copr8168052.x86_64 Provides: R-CRAN-nlmixr2est-debuginfo = 3.0.1-1.fc39.copr8168052 R-CRAN-nlmixr2est-debuginfo(x86-64) = 3.0.1-1.fc39.copr8168052 debuginfo(build-id) = 59264c5b3c95d03e317c9b48748b459c20c3ce73 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-CRAN-nlmixr2est-debugsource(x86-64) = 3.0.1-1.fc39.copr8168052 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.x86_64 Wrote: /builddir/build/RPMS/R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-nlmixr2est-debugsource-3.0.1-1.fc39.copr8168052.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-nlmixr2est-debuginfo-3.0.1-1.fc39.copr8168052.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.2hZuJO + umask 022 + cd /builddir/build/BUILD + cd nlmixr2est + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.c87xw0 + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/nlmixr2est-SPECPARTS + rm -rf nlmixr2est nlmixr2est.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.src.rpm Finish: build phase for R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1729648214.013762/root/var/log/dnf.log /var/lib/mock/fedora-39-x86_64-1729648214.013762/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1729648214.013762/root/var/log/dnf.rpm.log INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-nlmixr2est-3.0.1-1.fc39.copr8168052.src.rpm) Config(child) 5 minutes 16 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-CRAN-nlmixr2est-debugsource", "epoch": null, "version": "3.0.1", "release": "1.fc39.copr8168052", "arch": "x86_64" }, { "name": "R-CRAN-nlmixr2est", "epoch": null, "version": "3.0.1", "release": "1.fc39.copr8168052", "arch": "src" }, { "name": "R-CRAN-nlmixr2est-debuginfo", "epoch": null, "version": "3.0.1", "release": "1.fc39.copr8168052", "arch": "x86_64" }, { "name": "R-CRAN-nlmixr2est", "epoch": null, "version": "3.0.1", "release": "1.fc39.copr8168052", "arch": "x86_64" } ] } RPMResults finished