plot_weights {SUMO} | R Documentation |
Visualizing the loading of the features
plot_weights(
sim_object = NULL,
factor_num = 1,
data = "omic.one",
type = "scatter"
)
sim_object |
R object containing data to be plotted |
factor_num |
Factor to be plotted. |
data |
Section of the integrated data to be plotted, omic.one or omic.two are the options |
type |
Type of plot. Scatter plot and histogram are the only allowed plots |
A ggplot object.
If type
is "scatter", the function returns a scatter plot visualizing the loadings of features for the selected factor.
If type
is "histogram", the function returns a histogram displaying the distribution of the loadings for the selected factor.
The plot visualizes either omic.one
or omic.two
data based on the user input in the data
parameter.
The ggplot object can be further modified or directly plotted.
# Examples
output_obj <- OmixCraftHD(
vector_features = c(2000,3000),
sigmas_vector=c(8,5),
n_samples=100,
n_factors=4,
num.factor='multiple',
advanced_dist='mixed'
)
plot_weights(sim_object = output_obj, factor_num = 1, data = 'omic.one', type = 'scatter')
plot_weights(sim_object = output_obj, factor_num = 1, data = 'omic.one', type = 'histogram')
plot_weights(sim_object = output_obj, factor_num = 1, data = 'omic.two', type = 'scatter')
plot_weights(sim_object = output_obj, factor_num = 1, data = 'omic.two', type = 'histogram')