sc_mixing_score {SuperCell} | R Documentation |
Compute mixing of single-cells within supercell
sc_mixing_score(SC, clusters)
SC |
super-cell object (output of SCimplify function) |
clusters |
vector of clustering assignment (reference assignment) |
a vector of single-cell mixing within super-cell it belongs to, which is defined as: 1 - proportion of cells of the same annotation (e.g., cell type) within the same super-cell With 0 meaning that super-cell consists of single cells from one cluster (reference assignment) and higher values correspond to higher cell type mixing within super-cell