plotPT {RaceID} | R Documentation |
Plotting pseudo-time in dimensional reduction representation
Description
Highlight clusters or pseudotime in dimensional reduction representation and indicate trajectory derived by slingshot.
Usage
plotPT(pt, object, clusters = TRUE, lineages = FALSE)
Arguments
pt |
List object returned by function pseudoTime .
|
object |
RaceID SCseq object.
|
clusters |
logical. If TRUE , then clusters are highlighted. Otherwise, pseudotime is highlighted. Default is TRUE .
|
lineages |
logical. If TRUE , then lineages as linear connections of clusters are hghlighted. Otherwise, continuous trajectories are shown. Default is FALSE .
|
Value
None
[Package
RaceID version 0.3.7
Index]