plot.extr {ProbBreed} | R Documentation |
extr
objectBuild plots using the outputs stored in the extr
object.
## S3 method for class 'extr'
plot(x, ..., category = "ppdensity")
x |
An object of class |
... |
Passed to ggplot2::geom_histogram, when |
category |
A string indicating which plot to build. See options in the Details section. |
The available options are:
ppdensity
: Density plots of the empirical and sampled data, useful to assess the
model's convergence.
density
: Density plots of the model's effects.
histogram
: Histograms of the model's effects.
traceplot
: Trace plot showing the changes in the effects' values across iterations and chains.
mod = bayes_met(data = maize,
gen = "Hybrid",
loc = "Location",
repl = c("Rep","Block"),
trait = "GY",
reg = "Region",
year = NULL,
res.het = TRUE,
iter = 2000, cores = 2, chain = 4)
outs = extr_outs(model = mod,
probs = c(0.05, 0.95),
verbose = TRUE)
plot(outs, category = "ppdensity")
plot(outs, category = "density")
plot(outs, category = "histogram")
plot(outs, category = "traceplot")