calculate_MS {quicR}R Documentation

Calculate Maximum Slope

Description

Uses a sliding window to calculate the slope of real-time reads.

Usage

calculate_MS(data, window = 3)

Arguments

data

A dataframe containing real-time reads. It is recommended to use a dataframe made from normalize_RFU.

window

Integer designating how wide you want the sliding window to be for calculating the moving average slope.

Value

A dataframe containing the real-time slope values.

Examples

# This test takes >5 sec

  file <- system.file(
    "extdata/input_files",
    file = "rt_data.csv",
    package = "quicR"
)
df_ <- read.csv(file, check.names = FALSE)
calculate_MS(df_)




[Package quicR version 1.0.2 Index]