norm_internal_cross_product {OlinkAnalyze} | R Documentation |
Internal function normalizing Olink Explore 3k to Olink Explore 3072
norm_internal_cross_product(
ref_df,
ref_samples,
ref_name,
ref_cols,
not_ref_df,
not_ref_name,
not_ref_cols
)
ref_df |
The reference dataset to be used in normalization (required). |
ref_samples |
Character vector of sample identifiers to be used for adjustment factor calculation in the reference dataset (required). |
ref_name |
Project name of the reference dataset (required). |
ref_cols |
Named list of column names in the reference dataset (required). |
not_ref_df |
The non-reference dataset to be used in normalization (required). |
not_ref_name |
Project name of the non-reference dataset (required). |
not_ref_cols |
Named list of column names in the non-reference dataset (required). |
Tibble or ArrowObject with a dataset with the following additional columns:
OlinkID_E3072: Corresponding assay identifier from Olink Explore 3072.
Project: Project of origin.
BridgingRecommendation: Recommendation of whether the assay is bridgeable or not. One of "NotBridgeable", "MedianCentering", or "QuantileSmoothing".
MedianCenteredNPX: NPX values adjusted based on the median of the pair-wise differences of NPX values between bridge samples.
QSNormalizedNPX: NPX values adjusted based on the quantile smoothing normalization among bridge samples.
Klev Diamanti