graph.params2qpGraphFiles {poolfstat} | R Documentation |
Generate files for the qpGraph software from a graph.params object
graph.params2qpGraphFiles(
graph.params,
outfileprefix = "out",
n.printed.dec = 4,
verbose = TRUE
)
graph.params |
An object of class graph.params containing graph information with Fstats information (see the function generate.graph.params) |
outfileprefix |
The prefix of the qpGraph files |
n.printed.dec |
Number of decimal to be printed (if not enough may lead to fatalx error in qpGraph) |
verbose |
If TRUE extra information is printed on the terminal |
This function generates the three files required by qpGraph: i) a file named [outfileprefix].graph containing the graph in appropriate format; ii) a file named [outfileprefix].fstats file containing the fstats estimates of fstats (and their covariance); iii) a file named [outfileprefix].parqpGraph containing essential parameter information to run qpGraph (this may be edited by hand if other options are needed). The qpGraph software may then be run using the following options -p [outfileprefix].parqpGraph -g [outfileprefix].graph -o out.ggg -d out.dot.
The three files described in the details section
To generate graph.params object, see generate.graph.params