Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c109' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8317474-fedora-39-x86_64 --chroot fedora-39-x86_64 Version: 1.2 PID: 9618 Logging PID: 9619 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'bootstrap': 'off', 'build_id': 8317474, 'buildroot_pkgs': [], 'chroot': 'fedora-39-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'f76595343574cad411cb00ae22045e2801a470e8', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-bigsnpr', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-CRAN-bigsnpr', 'package_version': '1.12.18-1.copr8317474', 'project_dirname': 'cran', 'project_name': 'cran', 'project_owner': 'iucar', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/iucar/cran/fedora-39-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'iucar/cran--iucar', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': None, 'submitter': 'iucar', 'tags': [], 'task_id': '8317474-fedora-39-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-bigsnpr /var/lib/copr-rpmbuild/workspace/workdir-knn7yqme/R-CRAN-bigsnpr --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-bigsnpr', '/var/lib/copr-rpmbuild/workspace/workdir-knn7yqme/R-CRAN-bigsnpr', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-knn7yqme/R-CRAN-bigsnpr'... Running: git checkout f76595343574cad411cb00ae22045e2801a470e8 -- cmd: ['git', 'checkout', 'f76595343574cad411cb00ae22045e2801a470e8', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-knn7yqme/R-CRAN-bigsnpr rc: 0 stdout: stderr: Note: switching to 'f76595343574cad411cb00ae22045e2801a470e8'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at f765953 automatic import of R-CRAN-bigsnpr Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-knn7yqme/R-CRAN-bigsnpr rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading bigsnpr_1.12.18.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o bigsnpr_1.12.18.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/iucar/cran/R-CRAN-bigsnpr/bigsnpr_1.12.18.tar.gz/md5/c5f5a6fc3d649d372114ac9d3cf90739/bigsnpr_1.12.18.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 1040k 100 1040k 0 0 12.4M 0 --:--:-- --:--:-- --:--:-- 12.5M INFO: Reading stdout from command: md5sum bigsnpr_1.12.18.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-knn7yqme/R-CRAN-bigsnpr/R-CRAN-bigsnpr.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-knn7yqme/R-CRAN-bigsnpr --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1732672121.266430 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.9 starting (python version = 3.13.0, NVR = mock-5.9-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-knn7yqme/R-CRAN-bigsnpr/R-CRAN-bigsnpr.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-knn7yqme/R-CRAN-bigsnpr --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1732672121.266430 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-knn7yqme/R-CRAN-bigsnpr/R-CRAN-bigsnpr.spec) Config(fedora-39-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.9 INFO: Mock Version: 5.9 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1732672121.266430/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf4 detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 python3-dnf-4.22.0-1.fc41.noarch python3-dnf-plugins-core-4.10.0-1.fc41.noarch dnf5-5.2.7.0-1.fc41.x86_64 dnf5-plugins-5.2.7.0-1.fc41.x86_64 Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 35 MB/s | 12 MB 00:00 fedora 24 MB/s | 34 MB 00:01 updates 9.1 MB/s | 12 MB 00:01 Last metadata expiration check: 0:00:02 ago on Wed Nov 27 01:48:51 2024. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.26-1.fc39 updates 1.8 M bzip2 x86_64 1.0.8-16.fc39 fedora 52 k coreutils x86_64 9.3-7.fc39 updates 1.1 M cpio x86_64 2.14-4.fc39 fedora 279 k diffutils x86_64 3.10-3.fc39 fedora 398 k fedora-release-common noarch 39-36 updates 19 k findutils x86_64 1:4.9.0-6.fc39 updates 490 k gawk x86_64 5.2.2-2.fc39 fedora 1.1 M glibc-minimal-langpack x86_64 2.38-19.fc39 updates 65 k grep x86_64 3.11-3.fc39 fedora 298 k gzip x86_64 1.12-6.fc39 fedora 166 k info x86_64 7.0.3-3.fc39 fedora 182 k patch x86_64 2.7.6-22.fc39 fedora 125 k redhat-rpm-config noarch 266-1.fc39 updates 78 k rpm-build x86_64 4.19.1.1-1.fc39 updates 78 k sed x86_64 4.8-14.fc39 fedora 306 k shadow-utils x86_64 2:4.14.0-2.fc39 updates 1.3 M tar x86_64 2:1.35-2.fc39 fedora 864 k unzip x86_64 6.0-62.fc39 fedora 184 k util-linux x86_64 2.39.4-1.fc39 updates 1.2 M which x86_64 2.21-40.fc39 fedora 42 k xz x86_64 5.4.4-1.fc39 fedora 556 k Installing dependencies: alternatives x86_64 1.26-1.fc39 updates 39 k ansible-srpm-macros noarch 1-12.fc39 updates 21 k audit-libs x86_64 3.1.5-1.fc39 updates 123 k authselect x86_64 1.4.3-1.fc39 fedora 149 k authselect-libs x86_64 1.4.3-1.fc39 fedora 249 k basesystem noarch 11-18.fc39 fedora 7.2 k binutils x86_64 2.40-14.fc39 updates 5.6 M binutils-gold x86_64 2.40-14.fc39 updates 795 k bzip2-libs x86_64 1.0.8-16.fc39 fedora 41 k ca-certificates noarch 2024.2.69_v8.0.401-1.0.fc39 updates 871 k coreutils-common x86_64 9.3-7.fc39 updates 2.1 M cracklib x86_64 2.9.11-2.fc39 fedora 94 k crypto-policies noarch 20231204-1.git1e3a2e4.fc39 updates 100 k curl x86_64 8.2.1-5.fc39 updates 344 k cyrus-sasl-lib x86_64 2.1.28-11.fc39 fedora 793 k debugedit x86_64 5.0-12.fc39 updates 79 k dwz x86_64 0.15-3.fc39 fedora 134 k ed x86_64 1.19-4.fc39 fedora 79 k efi-srpm-macros noarch 5-9.fc39 fedora 22 k elfutils x86_64 0.192-4.fc39 updates 574 k elfutils-debuginfod-client x86_64 0.192-4.fc39 updates 43 k elfutils-default-yama-scope noarch 0.192-4.fc39 updates 12 k elfutils-libelf x86_64 0.192-4.fc39 updates 208 k elfutils-libs x86_64 0.192-4.fc39 updates 267 k fedora-gpg-keys noarch 39-2 updates 130 k fedora-release noarch 39-36 updates 8.6 k fedora-release-identity-basic noarch 39-36 updates 9.4 k fedora-repos noarch 39-2 updates 9.3 k file x86_64 5.44-5.fc39 fedora 49 k file-libs x86_64 5.44-5.fc39 fedora 729 k filesystem x86_64 3.18-6.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k forge-srpm-macros noarch 0.3.1-1.fc39 updates 19 k fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k gdb-minimal x86_64 15.1-1.fc39 updates 4.3 M gdbm-libs x86_64 1:1.23-4.fc39 fedora 56 k ghc-srpm-macros noarch 1.6.1-2.fc39 fedora 7.8 k glibc x86_64 2.38-19.fc39 updates 2.1 M glibc-common x86_64 2.38-19.fc39 updates 344 k glibc-gconv-extra x86_64 2.38-19.fc39 updates 1.6 M gmp x86_64 1:6.2.1-5.fc39 fedora 313 k gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k go-srpm-macros noarch 3.5.0-1.fc39 updates 28 k jansson x86_64 2.13.1-7.fc39 fedora 44 k json-c x86_64 0.17-1.fc39 fedora 43 k kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k keyutils-libs x86_64 1.6.3-1.fc39 updates 31 k krb5-libs x86_64 1.21.3-2.fc39 updates 766 k libacl x86_64 2.3.1-9.fc39 updates 23 k libarchive x86_64 3.7.1-3.fc39 updates 407 k libattr x86_64 2.5.1-8.fc39 fedora 18 k libblkid x86_64 2.39.4-1.fc39 updates 116 k libbrotli x86_64 1.1.0-1.fc39 fedora 336 k libcap x86_64 2.48-9.fc39 updates 68 k libcap-ng x86_64 0.8.3-8.fc39 fedora 32 k libcom_err x86_64 1.47.0-2.fc39 fedora 26 k libcurl x86_64 8.2.1-5.fc39 updates 322 k libdb x86_64 5.3.28-56.fc39 fedora 760 k libeconf x86_64 0.5.2-2.fc39 updates 30 k libevent x86_64 2.1.12-9.fc39 fedora 258 k libfdisk x86_64 2.39.4-1.fc39 updates 161 k libffi x86_64 3.4.4-4.fc39 fedora 40 k libgcc x86_64 13.3.1-3.fc39 updates 120 k libgomp x86_64 13.3.1-3.fc39 updates 329 k libidn2 x86_64 2.3.7-1.fc39 updates 119 k libmount x86_64 2.39.4-1.fc39 updates 154 k libnghttp2 x86_64 1.55.1-5.fc39 updates 75 k libnsl2 x86_64 2.0.0-6.fc39 fedora 30 k libpkgconf x86_64 1.9.5-2.fc39 fedora 38 k libpsl x86_64 0.21.2-4.fc39 fedora 63 k libpwquality x86_64 1.4.5-6.fc39 fedora 120 k libselinux x86_64 3.5-5.fc39 fedora 87 k libsemanage x86_64 3.5-4.fc39 fedora 120 k libsepol x86_64 3.5-2.fc39 fedora 324 k libsigsegv x86_64 2.14-5.fc39 fedora 27 k libsmartcols x86_64 2.39.4-1.fc39 updates 67 k libssh x86_64 0.10.6-2.fc39 updates 212 k libssh-config noarch 0.10.6-2.fc39 updates 9.0 k libstdc++ x86_64 13.3.1-3.fc39 updates 870 k libtasn1 x86_64 4.19.0-3.fc39 fedora 74 k libtirpc x86_64 1.3.6-0.fc39 updates 94 k libtool-ltdl x86_64 2.4.7-7.fc39 fedora 36 k libunistring x86_64 1.1-5.fc39 fedora 543 k libutempter x86_64 1.2.1-10.fc39 fedora 26 k libuuid x86_64 2.39.4-1.fc39 updates 28 k libverto x86_64 0.3.2-6.fc39 fedora 20 k libxcrypt x86_64 4.4.36-2.fc39 fedora 119 k libxml2 x86_64 2.10.4-3.fc39 fedora 701 k libzstd x86_64 1.5.6-1.fc39 updates 312 k lua-libs x86_64 5.4.6-3.fc39 fedora 133 k lua-srpm-macros noarch 1-13.fc39 updates 8.7 k lz4-libs x86_64 1.9.4-4.fc39 fedora 67 k mpfr x86_64 4.2.0-3.fc39 fedora 344 k ncurses-base noarch 6.4-7.20230520.fc39.1 updates 88 k ncurses-libs x86_64 6.4-7.20230520.fc39.1 updates 336 k ocaml-srpm-macros noarch 8-2.fc39 fedora 14 k openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k openldap x86_64 2.6.7-1.fc39 updates 254 k openssl-libs x86_64 1:3.1.4-4.fc39 updates 2.2 M p11-kit x86_64 0.25.5-1.fc39 updates 515 k p11-kit-trust x86_64 0.25.5-1.fc39 updates 138 k package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k pam x86_64 1.5.3-3.fc39 updates 542 k pam-libs x86_64 1.5.3-3.fc39 updates 56 k pcre2 x86_64 10.42-1.fc39.2 fedora 233 k pcre2-syntax noarch 10.42-1.fc39.2 fedora 143 k perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k pkgconf x86_64 1.9.5-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k pkgconf-pkg-config x86_64 1.9.5-2.fc39 fedora 9.6 k popt x86_64 1.19-3.fc39 fedora 66 k publicsuffix-list-dafsa noarch 20240107-1.fc39 updates 58 k pyproject-srpm-macros noarch 1.16.0-1.fc39 updates 14 k python-srpm-macros noarch 3.12-8.fc39 updates 23 k qt5-srpm-macros noarch 5.15.14-2.fc39 updates 8.9 k qt6-srpm-macros noarch 6.6.2-1.fc39 updates 8.9 k readline x86_64 8.2-6.fc39 updates 212 k rpm x86_64 4.19.1.1-1.fc39 updates 538 k rpm-build-libs x86_64 4.19.1.1-1.fc39 updates 95 k rpm-libs x86_64 4.19.1.1-1.fc39 updates 312 k rpm-sequoia x86_64 1.7.0-1.fc39 updates 904 k rpmautospec-rpm-macros noarch 0.7.3-1.fc39 updates 11 k rust-srpm-macros noarch 26.3-1.fc39 updates 13 k setup noarch 2.14.4-1.fc39 fedora 154 k sqlite-libs x86_64 3.42.0-7.fc39 fedora 678 k systemd-libs x86_64 254.20-1.fc39 updates 681 k util-linux-core x86_64 2.39.4-1.fc39 updates 507 k xxhash-libs x86_64 0.8.2-4.fc39 updates 37 k xz-libs x86_64 5.4.4-1.fc39 fedora 108 k zip x86_64 3.0-39.fc39 fedora 266 k zlib x86_64 1.2.13-4.fc39 fedora 94 k zstd x86_64 1.5.6-1.fc39 updates 479 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 154 Packages Total download size: 52 M Installed size: 180 M Downloading Packages: (1/154): basesystem-11-18.fc39.noarch.rpm 21 kB/s | 7.2 kB 00:00 (2/154): bzip2-1.0.8-16.fc39.x86_64.rpm 281 kB/s | 52 kB 00:00 (3/154): bzip2-libs-1.0.8-16.fc39.x86_64.rpm 387 kB/s | 41 kB 00:00 (4/154): authselect-1.4.3-1.fc39.x86_64.rpm 196 kB/s | 149 kB 00:00 (5/154): authselect-libs-1.4.3-1.fc39.x86_64.rp 284 kB/s | 249 kB 00:00 (6/154): cracklib-2.9.11-2.fc39.x86_64.rpm 445 kB/s | 94 kB 00:00 (7/154): cpio-2.14-4.fc39.x86_64.rpm 321 kB/s | 279 kB 00:00 (8/154): diffutils-3.10-3.fc39.x86_64.rpm 448 kB/s | 398 kB 00:00 (9/154): ed-1.19-4.fc39.x86_64.rpm 456 kB/s | 79 kB 00:00 (10/154): efi-srpm-macros-5-9.fc39.noarch.rpm 235 kB/s | 22 kB 00:00 (11/154): file-5.44-5.fc39.x86_64.rpm 289 kB/s | 49 kB 00:00 (12/154): dwz-0.15-3.fc39.x86_64.rpm 153 kB/s | 134 kB 00:00 (13/154): cyrus-sasl-lib-2.1.28-11.fc39.x86_64. 497 kB/s | 793 kB 00:01 (14/154): fonts-srpm-macros-2.0.5-12.fc39.noarc 157 kB/s | 26 kB 00:00 (15/154): fpc-srpm-macros-1.3-8.fc39.noarch.rpm 92 kB/s | 7.4 kB 00:00 (16/154): file-libs-5.44-5.fc39.x86_64.rpm 597 kB/s | 729 kB 00:01 (17/154): gdbm-libs-1.23-4.fc39.x86_64.rpm 350 kB/s | 56 kB 00:00 (18/154): ghc-srpm-macros-1.6.1-2.fc39.noarch.r 96 kB/s | 7.8 kB 00:00 (19/154): gmp-6.2.1-5.fc39.x86_64.rpm 631 kB/s | 313 kB 00:00 (20/154): gnat-srpm-macros-6-3.fc39.noarch.rpm 109 kB/s | 8.8 kB 00:00 (21/154): grep-3.11-3.fc39.x86_64.rpm 593 kB/s | 298 kB 00:00 (22/154): filesystem-3.18-6.fc39.x86_64.rpm 409 kB/s | 1.1 MB 00:02 (23/154): gzip-1.12-6.fc39.x86_64.rpm 510 kB/s | 166 kB 00:00 (24/154): gawk-5.2.2-2.fc39.x86_64.rpm 440 kB/s | 1.1 MB 00:02 (25/154): jansson-2.13.1-7.fc39.x86_64.rpm 498 kB/s | 44 kB 00:00 (26/154): json-c-0.17-1.fc39.x86_64.rpm 372 kB/s | 43 kB 00:00 (27/154): kernel-srpm-macros-1.0-20.fc39.noarch 78 kB/s | 10 kB 00:00 (28/154): libattr-2.5.1-8.fc39.x86_64.rpm 152 kB/s | 18 kB 00:00 (29/154): info-7.0.3-3.fc39.x86_64.rpm 466 kB/s | 182 kB 00:00 (30/154): libcap-ng-0.8.3-8.fc39.x86_64.rpm 394 kB/s | 32 kB 00:00 (31/154): libcom_err-1.47.0-2.fc39.x86_64.rpm 324 kB/s | 26 kB 00:00 (32/154): libbrotli-1.1.0-1.fc39.x86_64.rpm 600 kB/s | 336 kB 00:00 (33/154): libffi-3.4.4-4.fc39.x86_64.rpm 492 kB/s | 40 kB 00:00 (34/154): libevent-2.1.12-9.fc39.x86_64.rpm 539 kB/s | 258 kB 00:00 (35/154): libnsl2-2.0.0-6.fc39.x86_64.rpm 363 kB/s | 30 kB 00:00 (36/154): libpkgconf-1.9.5-2.fc39.x86_64.rpm 462 kB/s | 38 kB 00:00 (37/154): libpsl-0.21.2-4.fc39.x86_64.rpm 373 kB/s | 63 kB 00:00 (38/154): libpwquality-1.4.5-6.fc39.x86_64.rpm 494 kB/s | 120 kB 00:00 (39/154): libselinux-3.5-5.fc39.x86_64.rpm 527 kB/s | 87 kB 00:00 (40/154): libdb-5.3.28-56.fc39.x86_64.rpm 762 kB/s | 760 kB 00:00 (41/154): libsemanage-3.5-4.fc39.x86_64.rpm 576 kB/s | 120 kB 00:00 (42/154): libsigsegv-2.14-5.fc39.x86_64.rpm 318 kB/s | 27 kB 00:00 (43/154): libtool-ltdl-2.4.7-7.fc39.x86_64.rpm 444 kB/s | 36 kB 00:00 (44/154): libtasn1-4.19.0-3.fc39.x86_64.rpm 467 kB/s | 74 kB 00:00 (45/154): libutempter-1.2.1-10.fc39.x86_64.rpm 329 kB/s | 26 kB 00:00 (46/154): libverto-0.3.2-6.fc39.x86_64.rpm 256 kB/s | 20 kB 00:00 (47/154): libsepol-3.5-2.fc39.x86_64.rpm 652 kB/s | 324 kB 00:00 (48/154): libxcrypt-4.4.36-2.fc39.x86_64.rpm 748 kB/s | 119 kB 00:00 (49/154): lua-libs-5.4.6-3.fc39.x86_64.rpm 556 kB/s | 133 kB 00:00 (50/154): libunistring-1.1-5.fc39.x86_64.rpm 753 kB/s | 543 kB 00:00 (51/154): lz4-libs-1.9.4-4.fc39.x86_64.rpm 414 kB/s | 67 kB 00:00 (52/154): ocaml-srpm-macros-8-2.fc39.noarch.rpm 169 kB/s | 14 kB 00:00 (53/154): openblas-srpm-macros-2-14.fc39.noarch 95 kB/s | 7.5 kB 00:00 (54/154): package-notes-srpm-macros-0.5-9.fc39. 139 kB/s | 11 kB 00:00 (55/154): libxml2-2.10.4-3.fc39.x86_64.rpm 793 kB/s | 701 kB 00:00 (56/154): mpfr-4.2.0-3.fc39.x86_64.rpm 671 kB/s | 344 kB 00:00 (57/154): patch-2.7.6-22.fc39.x86_64.rpm 368 kB/s | 125 kB 00:00 (58/154): perl-srpm-macros-1-51.fc39.noarch.rpm 100 kB/s | 8.0 kB 00:00 (59/154): pcre2-syntax-10.42-1.fc39.2.noarch.rp 593 kB/s | 143 kB 00:00 (60/154): pcre2-10.42-1.fc39.2.x86_64.rpm 668 kB/s | 233 kB 00:00 (61/154): pkgconf-m4-1.9.5-2.fc39.noarch.rpm 153 kB/s | 14 kB 00:00 (62/154): pkgconf-pkg-config-1.9.5-2.fc39.x86_6 107 kB/s | 9.6 kB 00:00 (63/154): pkgconf-1.9.5-2.fc39.x86_64.rpm 236 kB/s | 42 kB 00:00 (64/154): setup-2.14.4-1.fc39.noarch.rpm 364 kB/s | 154 kB 00:00 (65/154): popt-1.19-3.fc39.x86_64.rpm 92 kB/s | 66 kB 00:00 (66/154): sed-4.8-14.fc39.x86_64.rpm 325 kB/s | 306 kB 00:00 (67/154): unzip-6.0-62.fc39.x86_64.rpm 193 kB/s | 184 kB 00:00 (68/154): which-2.21-40.fc39.x86_64.rpm 241 kB/s | 42 kB 00:00 (69/154): tar-1.35-2.fc39.x86_64.rpm 299 kB/s | 864 kB 00:02 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00:00 (85/154): debugedit-5.0-12.fc39.x86_64.rpm 2.0 MB/s | 79 kB 00:00 (86/154): crypto-policies-20231204-1.git1e3a2e4 470 kB/s | 100 kB 00:00 (87/154): elfutils-0.192-4.fc39.x86_64.rpm 9.5 MB/s | 574 kB 00:00 (88/154): elfutils-debuginfod-client-0.192-4.fc 1.1 MB/s | 43 kB 00:00 (89/154): elfutils-default-yama-scope-0.192-4.f 318 kB/s | 12 kB 00:00 (90/154): elfutils-libs-0.192-4.fc39.x86_64.rpm 6.2 MB/s | 267 kB 00:00 (91/154): elfutils-libelf-0.192-4.fc39.x86_64.r 4.5 MB/s | 208 kB 00:00 (92/154): fedora-release-39-36.noarch.rpm 233 kB/s | 8.6 kB 00:00 (93/154): fedora-release-common-39-36.noarch.rp 514 kB/s | 19 kB 00:00 (94/154): fedora-gpg-keys-39-2.noarch.rpm 1.7 MB/s | 130 kB 00:00 (95/154): fedora-release-identity-basic-39-36.n 255 kB/s | 9.4 kB 00:00 (96/154): fedora-repos-39-2.noarch.rpm 253 kB/s | 9.3 kB 00:00 (97/154): forge-srpm-macros-0.3.1-1.fc39.noarch 525 kB/s | 19 kB 00:00 (98/154): findutils-4.9.0-6.fc39.x86_64.rpm 4.5 MB/s | 490 kB 00:00 (99/154): 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openldap-2.6.7-1.fc39.x86_64.rpm 6.1 MB/s | 254 kB 00:00 (129/154): ncurses-libs-6.4-7.20230520.fc39.1.x 6.7 MB/s | 336 kB 00:00 (130/154): p11-kit-0.25.5-1.fc39.x86_64.rpm 11 MB/s | 515 kB 00:00 (131/154): p11-kit-trust-0.25.5-1.fc39.x86_64.r 3.0 MB/s | 138 kB 00:00 (132/154): openssl-libs-3.1.4-4.fc39.x86_64.rpm 20 MB/s | 2.2 MB 00:00 (133/154): pam-libs-1.5.3-3.fc39.x86_64.rpm 1.3 MB/s | 56 kB 00:00 (134/154): pam-1.5.3-3.fc39.x86_64.rpm 11 MB/s | 542 kB 00:00 (135/154): publicsuffix-list-dafsa-20240107-1.f 1.2 MB/s | 58 kB 00:00 (136/154): pyproject-srpm-macros-1.16.0-1.fc39. 292 kB/s | 14 kB 00:00 (137/154): qt5-srpm-macros-5.15.14-2.fc39.noarc 206 kB/s | 8.9 kB 00:00 (138/154): qt6-srpm-macros-6.6.2-1.fc39.noarch. 192 kB/s | 8.9 kB 00:00 (139/154): readline-8.2-6.fc39.x86_64.rpm 3.9 MB/s | 212 kB 00:00 (140/154): redhat-rpm-config-266-1.fc39.noarch. 1.9 MB/s | 78 kB 00:00 (141/154): rpm-build-4.19.1.1-1.fc39.x86_64.rpm 2.0 MB/s | 78 kB 00:00 (142/154): rpm-4.19.1.1-1.fc39.x86_64.rpm 10 MB/s | 538 kB 00:00 (143/154): rpm-build-libs-4.19.1.1-1.fc39.x86_6 2.3 MB/s | 95 kB 00:00 (144/154): rpm-libs-4.19.1.1-1.fc39.x86_64.rpm 6.7 MB/s | 312 kB 00:00 (145/154): rpmautospec-rpm-macros-0.7.3-1.fc39. 286 kB/s | 11 kB 00:00 (146/154): rpm-sequoia-1.7.0-1.fc39.x86_64.rpm 13 MB/s | 904 kB 00:00 (147/154): rust-srpm-macros-26.3-1.fc39.noarch. 337 kB/s | 13 kB 00:00 (148/154): python-srpm-macros-3.12-8.fc39.noarc 72 kB/s | 23 kB 00:00 (149/154): systemd-libs-254.20-1.fc39.x86_64.rp 11 MB/s | 681 kB 00:00 (150/154): shadow-utils-4.14.0-2.fc39.x86_64.rp 16 MB/s | 1.3 MB 00:00 (151/154): util-linux-2.39.4-1.fc39.x86_64.rpm 21 MB/s | 1.2 MB 00:00 (152/154): xxhash-libs-0.8.2-4.fc39.x86_64.rpm 975 kB/s | 37 kB 00:00 (153/154): util-linux-core-2.39.4-1.fc39.x86_64 9.6 MB/s | 507 kB 00:00 (154/154): zstd-1.5.6-1.fc39.x86_64.rpm 10 MB/s | 479 kB 00:00 -------------------------------------------------------------------------------- Total 3.3 MB/s | 52 MB 00:16 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-6.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.3.1-3.fc39.x86_64 1/154 Running scriptlet: libgcc-13.3.1-3.fc39.x86_64 1/154 Installing : crypto-policies-20231204-1.git1e3a2e4.fc39.noarc 2/154 Running scriptlet: crypto-policies-20231204-1.git1e3a2e4.fc39.noarc 2/154 Installing : rust-srpm-macros-26.3-1.fc39.noarch 3/154 Installing : qt6-srpm-macros-6.6.2-1.fc39.noarch 4/154 Installing : qt5-srpm-macros-5.15.14-2.fc39.noarch 5/154 Installing : publicsuffix-list-dafsa-20240107-1.fc39.noarch 6/154 Installing : ncurses-base-6.4-7.20230520.fc39.1.noarch 7/154 Installing : libssh-config-0.10.6-2.fc39.noarch 8/154 Installing : fedora-release-identity-basic-39-36.noarch 9/154 Installing : fedora-gpg-keys-39-2.noarch 10/154 Installing : fedora-repos-39-2.noarch 11/154 Installing : fedora-release-common-39-36.noarch 12/154 Installing : fedora-release-39-36.noarch 13/154 Installing : setup-2.14.4-1.fc39.noarch 14/154 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.4-1.fc39.noarch 14/154 Installing : filesystem-3.18-6.fc39.x86_64 15/154 Installing : basesystem-11-18.fc39.noarch 16/154 Installing : glibc-gconv-extra-2.38-19.fc39.x86_64 17/154 Running scriptlet: glibc-gconv-extra-2.38-19.fc39.x86_64 17/154 Installing : glibc-minimal-langpack-2.38-19.fc39.x86_64 18/154 Installing : glibc-common-2.38-19.fc39.x86_64 19/154 Running scriptlet: glibc-2.38-19.fc39.x86_64 20/154 Installing : glibc-2.38-19.fc39.x86_64 20/154 Running scriptlet: glibc-2.38-19.fc39.x86_64 20/154 Installing : ncurses-libs-6.4-7.20230520.fc39.1.x86_64 21/154 Installing : bash-5.2.26-1.fc39.x86_64 22/154 Running scriptlet: bash-5.2.26-1.fc39.x86_64 22/154 Installing : zlib-1.2.13-4.fc39.x86_64 23/154 Installing : xz-libs-5.4.4-1.fc39.x86_64 24/154 Installing : bzip2-libs-1.0.8-16.fc39.x86_64 25/154 Installing : popt-1.19-3.fc39.x86_64 26/154 Installing : libstdc++-13.3.1-3.fc39.x86_64 27/154 Installing : 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Installing : libnghttp2-1.55.1-5.fc39.x86_64 86/154 Installing : xxhash-libs-0.8.2-4.fc39.x86_64 87/154 Installing : coreutils-common-9.3-7.fc39.x86_64 88/154 Installing : ansible-srpm-macros-1-12.fc39.noarch 89/154 Installing : pkgconf-m4-1.9.5-2.fc39.noarch 90/154 Installing : pkgconf-pkg-config-1.9.5-2.fc39.x86_64 91/154 Installing : perl-srpm-macros-1-51.fc39.noarch 92/154 Installing : pcre2-syntax-10.42-1.fc39.2.noarch 93/154 Installing : pcre2-10.42-1.fc39.2.x86_64 94/154 Installing : libselinux-3.5-5.fc39.x86_64 95/154 Installing : sed-4.8-14.fc39.x86_64 96/154 Installing : grep-3.11-3.fc39.x86_64 97/154 Installing : findutils-1:4.9.0-6.fc39.x86_64 98/154 Installing : xz-5.4.4-1.fc39.x86_64 99/154 Installing : libmount-2.39.4-1.fc39.x86_64 100/154 Installing : util-linux-core-2.39.4-1.fc39.x86_64 101/154 Installing : openssl-libs-1:3.1.4-4.fc39.x86_64 102/154 Installing : coreutils-9.3-7.fc39.x86_64 103/154 Running scriptlet: ca-certificates-2024.2.69_v8.0.401-1.0.fc39.noar 104/154 Installing : ca-certificates-2024.2.69_v8.0.401-1.0.fc39.noar 104/154 Running scriptlet: ca-certificates-2024.2.69_v8.0.401-1.0.fc39.noar 104/154 Installing : krb5-libs-1.21.3-2.fc39.x86_64 105/154 Installing : libtirpc-1.3.6-0.fc39.x86_64 106/154 Running scriptlet: authselect-libs-1.4.3-1.fc39.x86_64 107/154 Installing : authselect-libs-1.4.3-1.fc39.x86_64 107/154 Installing : gzip-1.12-6.fc39.x86_64 108/154 Installing : libarchive-3.7.1-3.fc39.x86_64 109/154 Installing : cracklib-2.9.11-2.fc39.x86_64 110/154 Installing : libpwquality-1.4.5-6.fc39.x86_64 111/154 Installing : authselect-1.4.3-1.fc39.x86_64 112/154 Installing : libnsl2-2.0.0-6.fc39.x86_64 113/154 Installing : pam-1.5.3-3.fc39.x86_64 114/154 Installing : libssh-0.10.6-2.fc39.x86_64 115/154 Installing : libevent-2.1.12-9.fc39.x86_64 116/154 Installing : openldap-2.6.7-1.fc39.x86_64 117/154 Installing : libcurl-8.2.1-5.fc39.x86_64 118/154 Installing : elfutils-debuginfod-client-0.192-4.fc39.x86_64 119/154 Installing : binutils-gold-2.40-14.fc39.x86_64 120/154 Running scriptlet: binutils-gold-2.40-14.fc39.x86_64 120/154 Installing : binutils-2.40-14.fc39.x86_64 121/154 Running scriptlet: binutils-2.40-14.fc39.x86_64 121/154 Installing : elfutils-0.192-4.fc39.x86_64 122/154 Installing : gdb-minimal-15.1-1.fc39.x86_64 123/154 Installing : debugedit-5.0-12.fc39.x86_64 124/154 Installing : curl-8.2.1-5.fc39.x86_64 125/154 Installing : rpm-sequoia-1.7.0-1.fc39.x86_64 126/154 Installing : rpm-libs-4.19.1.1-1.fc39.x86_64 127/154 Running scriptlet: rpm-4.19.1.1-1.fc39.x86_64 128/154 Installing : rpm-4.19.1.1-1.fc39.x86_64 128/154 Installing : efi-srpm-macros-5-9.fc39.noarch 129/154 Installing : lua-srpm-macros-1-13.fc39.noarch 130/154 Installing : rpmautospec-rpm-macros-0.7.3-1.fc39.noarch 131/154 Installing : rpm-build-libs-4.19.1.1-1.fc39.x86_64 132/154 Installing : libsemanage-3.5-4.fc39.x86_64 133/154 Installing : shadow-utils-2:4.14.0-2.fc39.x86_64 134/154 Running scriptlet: libutempter-1.2.1-10.fc39.x86_64 135/154 Installing : libutempter-1.2.1-10.fc39.x86_64 135/154 Installing : patch-2.7.6-22.fc39.x86_64 136/154 Installing : tar-2:1.35-2.fc39.x86_64 137/154 Installing : package-notes-srpm-macros-0.5-9.fc39.noarch 138/154 Installing : openblas-srpm-macros-2-14.fc39.noarch 139/154 Installing : ocaml-srpm-macros-8-2.fc39.noarch 140/154 Installing : kernel-srpm-macros-1.0-20.fc39.noarch 141/154 Installing : gnat-srpm-macros-6-3.fc39.noarch 142/154 Installing : ghc-srpm-macros-1.6.1-2.fc39.noarch 143/154 Installing : fpc-srpm-macros-1.3-8.fc39.noarch 144/154 Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 145/154 Installing : forge-srpm-macros-0.3.1-1.fc39.noarch 146/154 Installing : go-srpm-macros-3.5.0-1.fc39.noarch 147/154 Installing : python-srpm-macros-3.12-8.fc39.noarch 148/154 Installing : redhat-rpm-config-266-1.fc39.noarch 149/154 Installing : rpm-build-4.19.1.1-1.fc39.x86_64 150/154 Installing : pyproject-srpm-macros-1.16.0-1.fc39.noarch 151/154 Installing : util-linux-2.39.4-1.fc39.x86_64 152/154 Running scriptlet: util-linux-2.39.4-1.fc39.x86_64 152/154 Installing : which-2.21-40.fc39.x86_64 153/154 Installing : info-7.0.3-3.fc39.x86_64 154/154 Running scriptlet: filesystem-3.18-6.fc39.x86_64 154/154 Running scriptlet: ca-certificates-2024.2.69_v8.0.401-1.0.fc39.noar 154/154 Running scriptlet: authselect-libs-1.4.3-1.fc39.x86_64 154/154 Running scriptlet: rpm-4.19.1.1-1.fc39.x86_64 154/154 Running scriptlet: info-7.0.3-3.fc39.x86_64 154/154 Installed products updated. Installed: alternatives-1.26-1.fc39.x86_64 ansible-srpm-macros-1-12.fc39.noarch audit-libs-3.1.5-1.fc39.x86_64 authselect-1.4.3-1.fc39.x86_64 authselect-libs-1.4.3-1.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.26-1.fc39.x86_64 binutils-2.40-14.fc39.x86_64 binutils-gold-2.40-14.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2024.2.69_v8.0.401-1.0.fc39.noarch coreutils-9.3-7.fc39.x86_64 coreutils-common-9.3-7.fc39.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231204-1.git1e3a2e4.fc39.noarch curl-8.2.1-5.fc39.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-12.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.192-4.fc39.x86_64 elfutils-debuginfod-client-0.192-4.fc39.x86_64 elfutils-default-yama-scope-0.192-4.fc39.noarch elfutils-libelf-0.192-4.fc39.x86_64 elfutils-libs-0.192-4.fc39.x86_64 fedora-gpg-keys-39-2.noarch fedora-release-39-36.noarch fedora-release-common-39-36.noarch fedora-release-identity-basic-39-36.noarch fedora-repos-39-2.noarch file-5.44-5.fc39.x86_64 file-libs-5.44-5.fc39.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-1:4.9.0-6.fc39.x86_64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.3.1-1.fc39.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-15.1-1.fc39.x86_64 gdbm-libs-1:1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38-19.fc39.x86_64 glibc-common-2.38-19.fc39.x86_64 glibc-gconv-extra-2.38-19.fc39.x86_64 glibc-minimal-langpack-2.38-19.fc39.x86_64 gmp-1:6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.5.0-1.fc39.noarch grep-3.11-3.fc39.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 json-c-0.17-1.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc39.x86_64 krb5-libs-1.21.3-2.fc39.x86_64 libacl-2.3.1-9.fc39.x86_64 libarchive-3.7.1-3.fc39.x86_64 libattr-2.5.1-8.fc39.x86_64 libblkid-2.39.4-1.fc39.x86_64 libbrotli-1.1.0-1.fc39.x86_64 libcap-2.48-9.fc39.x86_64 libcap-ng-0.8.3-8.fc39.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.2.1-5.fc39.x86_64 libdb-5.3.28-56.fc39.x86_64 libeconf-0.5.2-2.fc39.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.4-1.fc39.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.3.1-3.fc39.x86_64 libgomp-13.3.1-3.fc39.x86_64 libidn2-2.3.7-1.fc39.x86_64 libmount-2.39.4-1.fc39.x86_64 libnghttp2-1.55.1-5.fc39.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.4-1.fc39.x86_64 libssh-0.10.6-2.fc39.x86_64 libssh-config-0.10.6-2.fc39.noarch libstdc++-13.3.1-3.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.6-0.fc39.x86_64 libtool-ltdl-2.4.7-7.fc39.x86_64 libunistring-1.1-5.fc39.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.4-1.fc39.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 libzstd-1.5.6-1.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-13.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc39.1.noarch ncurses-libs-6.4-7.20230520.fc39.1.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.7-1.fc39.x86_64 openssl-libs-1:3.1.4-4.fc39.x86_64 p11-kit-0.25.5-1.fc39.x86_64 p11-kit-trust-0.25.5-1.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-3.fc39.x86_64 pam-libs-1.5.3-3.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20240107-1.fc39.noarch pyproject-srpm-macros-1.16.0-1.fc39.noarch python-srpm-macros-3.12-8.fc39.noarch qt5-srpm-macros-5.15.14-2.fc39.noarch qt6-srpm-macros-6.6.2-1.fc39.noarch readline-8.2-6.fc39.x86_64 redhat-rpm-config-266-1.fc39.noarch rpm-4.19.1.1-1.fc39.x86_64 rpm-build-4.19.1.1-1.fc39.x86_64 rpm-build-libs-4.19.1.1-1.fc39.x86_64 rpm-libs-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.7.0-1.fc39.x86_64 rpmautospec-rpm-macros-0.7.3-1.fc39.noarch rust-srpm-macros-26.3-1.fc39.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-2:4.14.0-2.fc39.x86_64 sqlite-libs-3.42.0-7.fc39.x86_64 systemd-libs-254.20-1.fc39.x86_64 tar-2:1.35-2.fc39.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.4-1.fc39.x86_64 util-linux-core-2.39.4-1.fc39.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-4.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-39.fc39.x86_64 zlib-1.2.13-4.fc39.x86_64 zstd-1.5.6-1.fc39.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-1.fc39.x86_64 ansible-srpm-macros-1-12.fc39.noarch audit-libs-3.1.5-1.fc39.x86_64 authselect-1.4.3-1.fc39.x86_64 authselect-libs-1.4.3-1.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.26-1.fc39.x86_64 binutils-2.40-14.fc39.x86_64 binutils-gold-2.40-14.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2024.2.69_v8.0.401-1.0.fc39.noarch coreutils-9.3-7.fc39.x86_64 coreutils-common-9.3-7.fc39.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231204-1.git1e3a2e4.fc39.noarch curl-8.2.1-5.fc39.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-12.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.192-4.fc39.x86_64 elfutils-debuginfod-client-0.192-4.fc39.x86_64 elfutils-default-yama-scope-0.192-4.fc39.noarch elfutils-libelf-0.192-4.fc39.x86_64 elfutils-libs-0.192-4.fc39.x86_64 fedora-gpg-keys-39-2.noarch fedora-release-39-36.noarch fedora-release-common-39-36.noarch fedora-release-identity-basic-39-36.noarch fedora-repos-39-2.noarch file-5.44-5.fc39.x86_64 file-libs-5.44-5.fc39.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-4.9.0-6.fc39.x86_64 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.3.1-1.fc39.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-15.1-1.fc39.x86_64 gdbm-libs-1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38-19.fc39.x86_64 glibc-common-2.38-19.fc39.x86_64 glibc-gconv-extra-2.38-19.fc39.x86_64 glibc-minimal-langpack-2.38-19.fc39.x86_64 gmp-6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.5.0-1.fc39.noarch gpg-pubkey-18b8e74c-62f2920f grep-3.11-3.fc39.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 json-c-0.17-1.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc39.x86_64 krb5-libs-1.21.3-2.fc39.x86_64 libacl-2.3.1-9.fc39.x86_64 libarchive-3.7.1-3.fc39.x86_64 libattr-2.5.1-8.fc39.x86_64 libblkid-2.39.4-1.fc39.x86_64 libbrotli-1.1.0-1.fc39.x86_64 libcap-2.48-9.fc39.x86_64 libcap-ng-0.8.3-8.fc39.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.2.1-5.fc39.x86_64 libdb-5.3.28-56.fc39.x86_64 libeconf-0.5.2-2.fc39.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.4-1.fc39.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.3.1-3.fc39.x86_64 libgomp-13.3.1-3.fc39.x86_64 libidn2-2.3.7-1.fc39.x86_64 libmount-2.39.4-1.fc39.x86_64 libnghttp2-1.55.1-5.fc39.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.4-1.fc39.x86_64 libssh-0.10.6-2.fc39.x86_64 libssh-config-0.10.6-2.fc39.noarch libstdc++-13.3.1-3.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.6-0.fc39.x86_64 libtool-ltdl-2.4.7-7.fc39.x86_64 libunistring-1.1-5.fc39.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.4-1.fc39.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 libzstd-1.5.6-1.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-13.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc39.1.noarch ncurses-libs-6.4-7.20230520.fc39.1.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.7-1.fc39.x86_64 openssl-libs-3.1.4-4.fc39.x86_64 p11-kit-0.25.5-1.fc39.x86_64 p11-kit-trust-0.25.5-1.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-3.fc39.x86_64 pam-libs-1.5.3-3.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20240107-1.fc39.noarch pyproject-srpm-macros-1.16.0-1.fc39.noarch python-srpm-macros-3.12-8.fc39.noarch qt5-srpm-macros-5.15.14-2.fc39.noarch qt6-srpm-macros-6.6.2-1.fc39.noarch readline-8.2-6.fc39.x86_64 redhat-rpm-config-266-1.fc39.noarch rpm-4.19.1.1-1.fc39.x86_64 rpm-build-4.19.1.1-1.fc39.x86_64 rpm-build-libs-4.19.1.1-1.fc39.x86_64 rpm-libs-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.7.0-1.fc39.x86_64 rpmautospec-rpm-macros-0.7.3-1.fc39.noarch rust-srpm-macros-26.3-1.fc39.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-4.14.0-2.fc39.x86_64 sqlite-libs-3.42.0-7.fc39.x86_64 systemd-libs-254.20-1.fc39.x86_64 tar-1.35-2.fc39.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.4-1.fc39.x86_64 util-linux-core-2.39.4-1.fc39.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-4.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-39.fc39.x86_64 zlib-1.2.13-4.fc39.x86_64 zstd-1.5.6-1.fc39.x86_64 Start: buildsrpm Start: rpmbuild -bs warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1732672121.266430/root/var/log/dnf.log /var/lib/mock/fedora-39-x86_64-1732672121.266430/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1732672121.266430/root/var/log/dnf.rpm.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-knn7yqme/R-CRAN-bigsnpr/R-CRAN-bigsnpr.spec) Config(child) 0 minutes 42 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.src.rpm) Config(fedora-39-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1732672121.266430/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 python3-dnf-4.22.0-1.fc41.noarch python3-dnf-plugins-core-4.10.0-1.fc41.noarch dnf5-5.2.7.0-1.fc41.x86_64 dnf5-plugins-5.2.7.0-1.fc41.x86_64 Finish: chroot init Start: build phase for R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.src.rpm Start: build setup for R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 17 kB/s | 1.5 kB 00:00 fedora 1.3 MB/s | 32 kB 00:00 updates 1.1 MB/s | 30 kB 00:00 Dependencies resolved. ========================================================================================== Package Arch Version Repo Size ========================================================================================== Installing: R-CRAN-Matrix x86_64 1.6.5-1.fc39.copr6886765 copr_base 4.1 M R-CRAN-Rcpp x86_64 1.0.13.1-1.fc39.copr8204071 copr_base 2.0 M R-CRAN-RcppArmadillo x86_64 14.2.0.1-1.fc39.copr8278649 copr_base 920 k R-CRAN-bigassertr noarch 0.1.6-1.fc39.copr6281167 copr_base 45 k R-CRAN-bigparallelr noarch 0.3.2-1.fc39.copr6287477 copr_base 57 k R-CRAN-bigreadr x86_64 0.2.5-1.fc39.copr6283207 copr_base 186 k R-CRAN-bigsparser x86_64 0.7.3-1.fc39.copr7990555 copr_base 296 k R-CRAN-bigstatsr x86_64 1.6.1-1.fc39.copr8001614 copr_base 1.3 M R-CRAN-bigutilsr x86_64 0.3.4-1.fc39.copr6289130 copr_base 972 k R-CRAN-data.table x86_64 1.16.2-1.fc39.copr8128145 copr_base 2.2 M R-CRAN-doRNG noarch 1.8.6-1.fc39.copr6285378 copr_base 309 k R-CRAN-foreach noarch 1.5.2-1.fc39.copr6282916 copr_base 143 k R-CRAN-ggplot2 noarch 3.5.1-1.fc39.copr7342639 copr_base 4.8 M R-CRAN-magrittr x86_64 2.0.3-1.fc39.copr6279321 copr_base 222 k R-CRAN-rmio noarch 0.4.0-1.fc39.copr6285381 copr_base 33 k R-CRAN-roptim x86_64 0.1.6-1.fc39.copr6285852 copr_base 262 k R-CRAN-runonce noarch 0.2.3-1.fc39.copr8100408 copr_base 33 k R-CRAN-vctrs x86_64 0.6.5-1.fc39.copr6715464 copr_base 1.3 M R-core x86_64 4.3.3-2.fc39 updates 64 M R-devel x86_64 4.3.3-2.fc39 updates 10 k Installing dependencies: R-CRAN-DEoptimR noarch 1.1.3.1-1.fc39.copr8307179 copr_base 90 k R-CRAN-MASS x86_64 7.3.60.0.1-1.fc39.copr6895092 copr_base 1.2 M R-CRAN-R6 noarch 2.5.1-1.fc39.copr6279323 copr_base 96 k R-CRAN-RColorBrewer noarch 1.1.3-1.fc39.copr6279333 copr_base 65 k R-CRAN-RSpectra x86_64 0.16.2-1.fc39.copr7752181 copr_base 440 k R-CRAN-RhpcBLASctl x86_64 0.23.42-1.fc39.copr6281113 copr_base 28 k R-CRAN-bit x86_64 4.5.0-1.fc39.copr8046195 copr_base 1.1 M R-CRAN-cli x86_64 3.6.3-1.fc39.copr7649835 copr_base 1.3 M R-CRAN-codetools noarch 0.2.20-1.fc39.copr7307081 copr_base 102 k R-CRAN-colorspace x86_64 2.1.1-1.fc39.copr7795131 copr_base 2.5 M R-CRAN-cowplot noarch 1.1.3-1.fc39.copr6942336 copr_base 1.3 M R-CRAN-digest x86_64 0.6.37-1.fc39.copr7936834 copr_base 229 k R-CRAN-doParallel noarch 1.0.17-1.fc39.copr6285248 copr_base 195 k R-CRAN-fansi x86_64 1.0.6-1.fc39.copr6735917 copr_base 339 k R-CRAN-farver x86_64 2.1.2-1.fc39.copr7442181 copr_base 1.3 M R-CRAN-ff x86_64 4.5.0-1.fc39.copr8046263 copr_base 1.1 M R-CRAN-flock x86_64 0.7-3.fc39.copr6283008 copr_base 53 k R-CRAN-glue x86_64 1.8.0-1.fc39.copr8094211 copr_base 172 k R-CRAN-gtable noarch 0.3.6-1.fc39.copr8178682 copr_base 236 k R-CRAN-isoband x86_64 0.2.7-1.fc39.copr6280488 copr_base 1.6 M R-CRAN-iterators noarch 1.0.14-1.fc39.copr6279403 copr_base 348 k R-CRAN-labeling noarch 0.4.3-1.fc39.copr6354313 copr_base 77 k R-CRAN-lattice x86_64 0.22.6-1.fc39.copr7307082 copr_base 1.4 M R-CRAN-lifecycle noarch 1.0.4-1.fc39.copr6614518 copr_base 130 k R-CRAN-mgcv x86_64 1.9.1-1.fc39.copr6775870 copr_base 3.3 M R-CRAN-munsell noarch 0.5.1-1.fc39.copr7306785 copr_base 251 k R-CRAN-nabor x86_64 0.5.0-1.fc39.copr6286869 copr_base 165 k R-CRAN-nlme x86_64 3.1.166-1.fc39.copr7936970 copr_base 2.4 M R-CRAN-parallelly x86_64 1.39.0-1.fc39.copr8230096 copr_base 418 k R-CRAN-pillar noarch 1.9.0-1.fc39.copr6286818 copr_base 626 k R-CRAN-pkgconfig noarch 2.0.3-3.fc39.copr6279322 copr_base 30 k R-CRAN-ps x86_64 1.8.1-1.fc39.copr8184952 copr_base 412 k R-CRAN-rlang x86_64 1.1.4-1.fc39.copr7531082 copr_base 1.6 M R-CRAN-rngtools noarch 1.5.2-1.fc39.copr8100552 copr_base 96 k R-CRAN-robustbase x86_64 0.99.4.1-1.fc39.copr8086707 copr_base 3.0 M R-CRAN-scales noarch 1.3.0-1.fc39.copr6704012 copr_base 707 k R-CRAN-tibble x86_64 3.2.1-1.fc39.copr6288598 copr_base 632 k R-CRAN-triebeard x86_64 0.4.1-1.fc39.copr6282958 copr_base 154 k R-CRAN-urltools x86_64 1.7.3-3.fc39.copr6285263 copr_base 271 k R-CRAN-utf8 x86_64 1.2.4-1.fc39.copr6555966 copr_base 150 k R-CRAN-viridisLite noarch 0.4.2-1.fc39.copr6279312 copr_base 1.2 M R-CRAN-withr noarch 3.0.2-1.fc39.copr8184963 copr_base 246 k R-core-devel x86_64 4.3.3-2.fc39 updates 93 k R-java x86_64 4.3.3-2.fc39 updates 11 k R-java-devel x86_64 4.3.3-2.fc39 updates 10 k R-littler x86_64 0.3.19-1.fc39 updates 76 k R-rpm-macros noarch 1.2.1-7.fc39 fedora 11 k abattis-cantarell-vf-fonts noarch 0.301-10.fc39 fedora 121 k alsa-lib x86_64 1.2.12-1.fc39 updates 521 k annobin-docs noarch 12.60-1.fc39 updates 88 k annobin-plugin-gcc x86_64 12.60-1.fc39 updates 965 k avahi-libs x86_64 0.8-24.fc39 fedora 67 k brotli x86_64 1.1.0-1.fc39 fedora 20 k brotli-devel x86_64 1.1.0-1.fc39 fedora 34 k bzip2-devel x86_64 1.0.8-16.fc39 fedora 214 k cairo x86_64 1.18.0-1.fc39 fedora 710 k cmake-filesystem x86_64 3.30.5-1.fc39 updates 17 k copy-jdk-configs noarch 4.1-3.fc39 fedora 28 k cpp x86_64 13.3.1-3.fc39 updates 11 M crypto-policies-scripts noarch 20231204-1.git1e3a2e4.fc39 updates 117 k cups-libs x86_64 1:2.4.11-1.fc39 updates 268 k dbus-libs x86_64 1:1.14.10-1.fc39 fedora 156 k default-fonts-core-sans noarch 4.0-9.fc39 fedora 32 k desktop-file-utils x86_64 0.26-9.fc39 fedora 72 k emacs-filesystem noarch 1:29.4-2.fc39 updates 7.3 k expat x86_64 2.6.3-1.fc39 updates 114 k flexiblas x86_64 3.4.4-1.fc39 updates 25 k flexiblas-devel x86_64 3.4.4-1.fc39 updates 121 k flexiblas-netlib x86_64 3.4.4-1.fc39 updates 3.1 M flexiblas-netlib64 x86_64 3.4.4-1.fc39 updates 3.0 M flexiblas-openblas-openmp x86_64 3.4.4-1.fc39 updates 17 k flexiblas-openblas-openmp64 x86_64 3.4.4-1.fc39 updates 17 k fontconfig x86_64 2.14.2-6.fc39 updates 296 k fontconfig-devel x86_64 2.14.2-6.fc39 updates 164 k fonts-filesystem noarch 1:2.0.5-12.fc39 fedora 8.2 k freetype x86_64 2.13.1-2.fc39 fedora 414 k freetype-devel x86_64 2.13.1-2.fc39 fedora 950 k fribidi x86_64 1.0.13-2.fc39 fedora 91 k gc x86_64 8.2.2-4.fc39 fedora 110 k gcc x86_64 13.3.1-3.fc39 updates 34 M gcc-c++ x86_64 13.3.1-3.fc39 updates 13 M gcc-gfortran x86_64 13.3.1-3.fc39 updates 12 M gcc-plugin-annobin x86_64 13.3.1-3.fc39 updates 58 k gettext x86_64 0.22-2.fc39 fedora 1.1 M gettext-envsubst x86_64 0.22-2.fc39 fedora 36 k gettext-libs x86_64 0.22-2.fc39 fedora 328 k gettext-runtime x86_64 0.22-2.fc39 fedora 120 k glib2 x86_64 2.78.6-1.fc39 updates 2.8 M glib2-devel x86_64 2.78.6-1.fc39 updates 594 k glibc-devel x86_64 2.38-19.fc39 updates 74 k glibc-headers-x86 noarch 2.38-19.fc39 updates 562 k gnutls x86_64 3.8.6-1.fc39 updates 1.1 M google-noto-fonts-common noarch 20240101-1.fc39 updates 17 k google-noto-sans-vf-fonts noarch 20240101-1.fc39 updates 593 k graphite2 x86_64 1.3.14-12.fc39 fedora 95 k graphite2-devel x86_64 1.3.14-12.fc39 fedora 20 k guile22 x86_64 2.2.7-9.fc39 fedora 6.5 M harfbuzz x86_64 8.2.1-2.fc39 fedora 975 k harfbuzz-devel x86_64 8.2.1-2.fc39 fedora 450 k harfbuzz-icu x86_64 8.2.1-2.fc39 fedora 17 k java-17-openjdk x86_64 1:17.0.13.0.11-3.fc39 updates 420 k java-17-openjdk-devel x86_64 1:17.0.13.0.11-3.fc39 updates 4.7 M java-17-openjdk-headless x86_64 1:17.0.13.0.11-3.fc39 updates 44 M javapackages-filesystem noarch 6.1.0-10.fc39 fedora 12 k jbigkit-libs x86_64 2.1-26.fc39 fedora 53 k kernel-headers x86_64 6.11.3-100.fc39 updates 1.6 M libICE x86_64 1.0.10-11.fc39 fedora 70 k libRmath x86_64 4.3.3-2.fc39 updates 121 k libRmath-devel x86_64 4.3.3-2.fc39 updates 16 k libSM x86_64 1.2.3-13.fc39 fedora 41 k libX11 x86_64 1.8.9-1.fc39 updates 650 k libX11-common noarch 1.8.9-1.fc39 updates 176 k libX11-devel x86_64 1.8.9-1.fc39 updates 1.0 M libX11-xcb x86_64 1.8.9-1.fc39 updates 12 k libXau x86_64 1.0.11-3.fc39 fedora 31 k libXau-devel x86_64 1.0.11-3.fc39 fedora 14 k libXcomposite x86_64 0.4.5-10.fc39 fedora 23 k libXext x86_64 1.3.5-3.fc39 fedora 39 k libXft x86_64 2.3.8-3.fc39 fedora 72 k libXft-devel x86_64 2.3.8-3.fc39 fedora 50 k libXi x86_64 1.8.1-2.fc39 fedora 40 k libXmu x86_64 1.1.4-3.fc39 fedora 76 k libXrender x86_64 0.9.11-3.fc39 fedora 27 k libXrender-devel x86_64 0.9.11-3.fc39 fedora 19 k libXt x86_64 1.2.1-5.fc39 fedora 178 k libXtst x86_64 1.2.4-3.fc39 fedora 20 k libb2 x86_64 0.98.1-9.fc39 fedora 25 k libblkid-devel x86_64 2.39.4-1.fc39 updates 18 k libdatrie x86_64 0.2.13-7.fc39 fedora 32 k libffi-devel x86_64 3.4.4-4.fc39 fedora 29 k libfontenc x86_64 1.1.6-3.fc39 fedora 32 k libgfortran x86_64 13.3.1-3.fc39 updates 909 k libicu x86_64 73.2-2.fc39 fedora 11 M libicu-devel x86_64 73.2-2.fc39 fedora 924 k libjpeg-turbo x86_64 2.1.4-3.fc39 fedora 183 k liblerc x86_64 4.0.0-4.fc39 fedora 201 k libmount-devel x86_64 2.39.4-1.fc39 updates 18 k libmpc x86_64 1.3.1-3.fc39 fedora 70 k libpng x86_64 2:1.6.37-15.fc39 fedora 119 k libpng-devel x86_64 2:1.6.37-15.fc39 fedora 291 k libquadmath x86_64 13.3.1-3.fc39 updates 205 k libquadmath-devel x86_64 13.3.1-3.fc39 updates 47 k libselinux-devel x86_64 3.5-5.fc39 fedora 151 k libsepol-devel x86_64 3.5-2.fc39 fedora 49 k libstdc++-devel x86_64 13.3.1-3.fc39 updates 2.6 M libthai x86_64 0.1.29-6.fc39 fedora 213 k libtiff x86_64 4.4.0-10.fc39 updates 200 k libtirpc-devel x86_64 1.3.6-0.fc39 updates 125 k libwebp x86_64 1.3.2-2.fc39 fedora 284 k libxcb x86_64 1.13.1-12.fc39 fedora 233 k libxcb-devel x86_64 1.13.1-12.fc39 fedora 1.4 M libxcrypt-devel x86_64 4.4.36-2.fc39 fedora 30 k libxml2-devel x86_64 2.10.4-3.fc39 fedora 527 k lksctp-tools x86_64 1.0.20-1.fc39 updates 97 k lua x86_64 5.4.6-3.fc39 fedora 191 k lua-posix x86_64 36.2.1-3.fc39 fedora 143 k make x86_64 1:4.4.1-2.fc39 fedora 589 k mkfontscale x86_64 1.2.2-4.fc39 fedora 32 k mpdecimal x86_64 2.5.1-7.fc39 fedora 89 k nettle x86_64 3.9.1-2.fc39 fedora 425 k nspr x86_64 4.35.0-24.fc39 updates 137 k nss x86_64 3.105.0-1.fc39 updates 708 k nss-softokn x86_64 3.105.0-1.fc39 updates 422 k nss-softokn-freebl x86_64 3.105.0-1.fc39 updates 324 k nss-sysinit x86_64 3.105.0-1.fc39 updates 18 k nss-util x86_64 3.105.0-1.fc39 updates 88 k openblas x86_64 0.3.21-6.fc39 fedora 35 k openblas-openmp x86_64 0.3.21-6.fc39 fedora 4.9 M openblas-openmp64 x86_64 0.3.21-6.fc39 fedora 4.8 M pango x86_64 1.51.0-1.fc39 fedora 343 k pcre2-devel x86_64 10.42-1.fc39.2 fedora 505 k pcre2-utf16 x86_64 10.42-1.fc39.2 fedora 212 k pcre2-utf32 x86_64 10.42-1.fc39.2 fedora 200 k pixman x86_64 0.42.2-2.fc39 fedora 288 k python-pip-wheel noarch 23.2.1-2.fc39 updates 1.5 M python3 x86_64 3.12.7-1.fc39 updates 28 k python3-libs x86_64 3.12.7-1.fc39 updates 9.2 M python3-setuptools noarch 67.7.2-8.fc39 updates 1.5 M sysprof-capture-devel x86_64 45.1-1.fc39 updates 59 k tcl x86_64 1:8.6.12-5.fc39 fedora 1.1 M tcl-devel x86_64 1:8.6.12-5.fc39 fedora 169 k tk x86_64 1:8.6.12-5.fc39 fedora 1.6 M tk-devel x86_64 1:8.6.12-5.fc39 fedora 537 k tre x86_64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 43 k tre-common noarch 0.8.0-41.20140228gitc2f5d13.fc39 fedora 31 k tre-devel x86_64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 12 k ttmkfdir x86_64 3.0.9-69.fc39 fedora 56 k tzdata noarch 2024a-2.fc39 updates 715 k tzdata-java noarch 2024a-2.fc39 updates 208 k xdg-utils noarch 1.1.3-15.fc39 fedora 77 k xml-common noarch 0.6.3-61.fc39 fedora 31 k xorg-x11-fonts-Type1 noarch 7.5-36.fc39 fedora 504 k xorg-x11-proto-devel noarch 2023.2-2.fc39 fedora 298 k xz-devel x86_64 5.4.4-1.fc39 fedora 66 k zlib-devel x86_64 1.2.13-4.fc39 fedora 45 k Transaction Summary ========================================================================================== Install 215 Packages Total download size: 316 M Installed size: 941 M Downloading Packages: (1/215): R-CRAN-DEoptimR-1.1.3.1-1.fc39.copr830 1.1 MB/s | 90 kB 00:00 (2/215): R-CRAN-R6-2.5.1-1.fc39.copr6279323.noa 1.4 MB/s | 96 kB 00:00 (3/215): R-CRAN-MASS-7.3.60.0.1-1.fc39.copr6895 6.6 MB/s | 1.2 MB 00:00 (4/215): R-CRAN-RColorBrewer-1.1.3-1.fc39.copr6 1.1 MB/s | 65 kB 00:00 (5/215): R-CRAN-RSpectra-0.16.2-1.fc39.copr7752 5.1 MB/s | 440 kB 00:00 (6/215): R-CRAN-Matrix-1.6.5-1.fc39.copr6886765 15 MB/s | 4.1 MB 00:00 (7/215): R-CRAN-Rcpp-1.0.13.1-1.fc39.copr820407 16 MB/s | 2.0 MB 00:00 (8/215): R-CRAN-RhpcBLASctl-0.23.42-1.fc39.copr 376 kB/s | 28 kB 00:00 (9/215): R-CRAN-RcppArmadillo-14.2.0.1-1.fc39.c 8.5 MB/s | 920 kB 00:00 (10/215): R-CRAN-bigassertr-0.1.6-1.fc39.copr62 911 kB/s | 45 kB 00:00 (11/215): R-CRAN-bigparallelr-0.3.2-1.fc39.copr 1.5 MB/s | 57 kB 00:00 (12/215): R-CRAN-bigreadr-0.2.5-1.fc39.copr6283 2.9 MB/s | 186 kB 00:00 (13/215): R-CRAN-bigsparser-0.7.3-1.fc39.copr79 4.2 MB/s | 296 kB 00:00 (14/215): R-CRAN-bigstatsr-1.6.1-1.fc39.copr800 9.1 MB/s | 1.3 MB 00:00 (15/215): R-CRAN-bigutilsr-0.3.4-1.fc39.copr628 6.9 MB/s | 972 kB 00:00 (16/215): R-CRAN-bit-4.5.0-1.fc39.copr8046195.x 8.0 MB/s | 1.1 MB 00:00 (17/215): R-CRAN-cli-3.6.3-1.fc39.copr7649835.x 18 MB/s | 1.3 MB 00:00 (18/215): R-CRAN-cowplot-1.1.3-1.fc39.copr69423 11 MB/s | 1.3 MB 00:00 (19/215): R-CRAN-colorspace-2.1.1-1.fc39.copr77 19 MB/s | 2.5 MB 00:00 (20/215): R-CRAN-codetools-0.2.20-1.fc39.copr73 730 kB/s | 102 kB 00:00 (21/215): R-CRAN-data.table-1.16.2-1.fc39.copr8 47 MB/s | 2.2 MB 00:00 (22/215): R-CRAN-digest-0.6.37-1.fc39.copr79368 3.9 MB/s | 229 kB 00:00 (23/215): R-CRAN-doParallel-1.0.17-1.fc39.copr6 2.5 MB/s | 195 kB 00:00 (24/215): R-CRAN-fansi-1.0.6-1.fc39.copr6735917 17 MB/s | 339 kB 00:00 (25/215): R-CRAN-doRNG-1.8.6-1.fc39.copr6285378 1.7 MB/s | 309 kB 00:00 (26/215): R-CRAN-ff-4.5.0-1.fc39.copr8046263.x8 5.8 MB/s | 1.1 MB 00:00 (27/215): R-CRAN-farver-2.1.2-1.fc39.copr744218 6.9 MB/s | 1.3 MB 00:00 (28/215): R-CRAN-flock-0.7-3.fc39.copr6283008.x 660 kB/s | 53 kB 00:00 (29/215): R-CRAN-foreach-1.5.2-1.fc39.copr62829 2.6 MB/s | 143 kB 00:00 (30/215): R-CRAN-glue-1.8.0-1.fc39.copr8094211. 7.4 MB/s | 172 kB 00:00 (31/215): R-CRAN-ggplot2-3.5.1-1.fc39.copr73426 18 MB/s | 4.8 MB 00:00 (32/215): R-CRAN-gtable-0.3.6-1.fc39.copr817868 1.0 MB/s | 236 kB 00:00 (33/215): R-CRAN-isoband-0.2.7-1.fc39.copr62804 6.7 MB/s | 1.6 MB 00:00 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Running transaction test Transaction test succeeded. Running transaction Running scriptlet: copy-jdk-configs-4.1-3.fc39.noarch 1/1 Running scriptlet: java-17-openjdk-headless-1:17.0.13.0.11-3.fc39.x86_6 1/1 dnf 5 is printing lua only to stdout, but may skip first and last line The java-17-openjdk package is deprecated and may no longer receive updates. Since f42 install adoptium-temurin-java-repository and install temurin-17-jre https://fedoraproject.org/wiki/Changes/ThirdPartyLegacyJdks#adoptium-temurin-java-repository It currently lacks rpm-based debuginfo, fastdebugs and slowdebugs and headless subpackage. It also lacks offline javadocs and jdk duplicates jre dnf 5 is printing lua only to stdout, but may skip first and last line Running scriptlet: java-17-openjdk-devel-1:17.0.13.0.11-3.fc39.x86_64 1/1 dnf 5 is printing lua only to stdout, but may skip first and last line The java-17-openjdk-devel package is deprecated and may no longer receive updates. Since f42 install adoptium-temurin-java-repository and install temurin-17-jdk https://fedoraproject.org/wiki/Changes/ThirdPartyLegacyJdks#adoptium-temurin-java-repository It currently lacks rpm-based debuginfo, fastdebugs and slowdebugs and headless subpackage. 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168/215 Installing : R-CRAN-magrittr-2.0.3-1.fc39.copr6279321.x86_64 169/215 Installing : R-CRAN-pkgconfig-2.0.3-3.fc39.copr6279322.noarch 170/215 Installing : R-CRAN-ps-1.8.1-1.fc39.copr8184952.x86_64 171/215 Installing : R-CRAN-utf8-1.2.4-1.fc39.copr6555966.x86_64 172/215 Installing : R-CRAN-pillar-1.9.0-1.fc39.copr6286818.noarch 173/215 Installing : R-CRAN-tibble-3.2.1-1.fc39.copr6288598.x86_64 174/215 Installing : R-CRAN-viridisLite-0.4.2-1.fc39.copr6279312.noar 175/215 Installing : R-CRAN-scales-1.3.0-1.fc39.copr6704012.noarch 176/215 Installing : R-CRAN-withr-3.0.2-1.fc39.copr8184963.noarch 177/215 Installing : R-CRAN-ggplot2-3.5.1-1.fc39.copr7342639.noarch 178/215 Installing : R-CRAN-cowplot-1.1.3-1.fc39.copr6942336.noarch 179/215 Installing : R-rpm-macros-1.2.1-7.fc39.noarch 180/215 Installing : R-littler-0.3.19-1.fc39.x86_64 181/215 Installing : R-CRAN-Rcpp-1.0.13.1-1.fc39.copr8204071.x86_64 182/215 Installing : R-CRAN-RSpectra-0.16.2-1.fc39.copr7752181.x86_64 183/215 Installing : R-CRAN-flock-0.7-3.fc39.copr6283008.x86_64 184/215 Installing : R-CRAN-bigparallelr-0.3.2-1.fc39.copr6287477.noa 185/215 Installing : R-CRAN-nabor-0.5.0-1.fc39.copr6286869.x86_64 186/215 Installing : R-CRAN-triebeard-0.4.1-1.fc39.copr6282958.x86_64 187/215 Installing : R-CRAN-urltools-1.7.3-3.fc39.copr6285263.x86_64 188/215 Installing : dbus-libs-1:1.14.10-1.fc39.x86_64 189/215 Installing : avahi-libs-0.8-24.fc39.x86_64 190/215 Installing : cups-libs-1:2.4.11-1.fc39.x86_64 191/215 Installing : java-17-openjdk-headless-1:17.0.13.0.11-3.fc39.x 192/215 Running scriptlet: java-17-openjdk-headless-1:17.0.13.0.11-3.fc39.x 192/215 Installing : R-java-4.3.3-2.fc39.x86_64 193/215 Installing : java-17-openjdk-1:17.0.13.0.11-3.fc39.x86_64 194/215 Running scriptlet: java-17-openjdk-1:17.0.13.0.11-3.fc39.x86_64 194/215 Installing : java-17-openjdk-devel-1:17.0.13.0.11-3.fc39.x86_ 195/215 Running scriptlet: java-17-openjdk-devel-1:17.0.13.0.11-3.fc39.x86_ 195/215 Installing : brotli-1.1.0-1.fc39.x86_64 196/215 Installing : brotli-devel-1.1.0-1.fc39.x86_64 197/215 Installing : freetype-devel-2.13.1-2.fc39.x86_64 198/215 Installing : harfbuzz-devel-8.2.1-2.fc39.x86_64 199/215 Installing : fontconfig-devel-2.14.2-6.fc39.x86_64 200/215 Installing : libXft-devel-2.3.8-3.fc39.x86_64 201/215 Installing : tk-devel-1:8.6.12-5.fc39.x86_64 202/215 Installing : R-core-devel-4.3.3-2.fc39.x86_64 203/215 Installing : R-java-devel-4.3.3-2.fc39.x86_64 204/215 Installing : R-devel-4.3.3-2.fc39.x86_64 205/215 Installing : R-CRAN-runonce-0.2.3-1.fc39.copr8100408.noarch 206/215 Installing : R-CRAN-bigutilsr-0.3.4-1.fc39.copr6289130.x86_64 207/215 Installing : R-CRAN-bigstatsr-1.6.1-1.fc39.copr8001614.x86_64 208/215 Installing : R-CRAN-RcppArmadillo-14.2.0.1-1.fc39.copr8278649 209/215 Installing : R-CRAN-bigreadr-0.2.5-1.fc39.copr6283207.x86_64 210/215 Installing : R-CRAN-bigsparser-0.7.3-1.fc39.copr7990555.x86_6 211/215 Installing : R-CRAN-roptim-0.1.6-1.fc39.copr6285852.x86_64 212/215 Installing : R-CRAN-doRNG-1.8.6-1.fc39.copr6285378.noarch 213/215 Installing : annobin-plugin-gcc-12.60-1.fc39.x86_64 214/215 Running scriptlet: annobin-plugin-gcc-12.60-1.fc39.x86_64 214/215 Installing : gcc-plugin-annobin-13.3.1-3.fc39.x86_64 215/215 Running scriptlet: gcc-plugin-annobin-13.3.1-3.fc39.x86_64 215/215 Running scriptlet: fontconfig-2.14.2-6.fc39.x86_64 215/215 Running scriptlet: copy-jdk-configs-4.1-3.fc39.noarch 215/215 Running scriptlet: crypto-policies-scripts-20231204-1.git1e3a2e4.fc 215/215 Running scriptlet: nss-3.105.0-1.fc39.x86_64 215/215 Running scriptlet: java-17-openjdk-headless-1:17.0.13.0.11-3.fc39.x 215/215 Running scriptlet: java-17-openjdk-1:17.0.13.0.11-3.fc39.x86_64 215/215 Running scriptlet: java-17-openjdk-devel-1:17.0.13.0.11-3.fc39.x86_ 215/215 Running scriptlet: gcc-plugin-annobin-13.3.1-3.fc39.x86_64 215/215 Installed products updated. Installed: R-CRAN-DEoptimR-1.1.3.1-1.fc39.copr8307179.noarch R-CRAN-MASS-7.3.60.0.1-1.fc39.copr6895092.x86_64 R-CRAN-Matrix-1.6.5-1.fc39.copr6886765.x86_64 R-CRAN-R6-2.5.1-1.fc39.copr6279323.noarch R-CRAN-RColorBrewer-1.1.3-1.fc39.copr6279333.noarch R-CRAN-RSpectra-0.16.2-1.fc39.copr7752181.x86_64 R-CRAN-Rcpp-1.0.13.1-1.fc39.copr8204071.x86_64 R-CRAN-RcppArmadillo-14.2.0.1-1.fc39.copr8278649.x86_64 R-CRAN-RhpcBLASctl-0.23.42-1.fc39.copr6281113.x86_64 R-CRAN-bigassertr-0.1.6-1.fc39.copr6281167.noarch R-CRAN-bigparallelr-0.3.2-1.fc39.copr6287477.noarch R-CRAN-bigreadr-0.2.5-1.fc39.copr6283207.x86_64 R-CRAN-bigsparser-0.7.3-1.fc39.copr7990555.x86_64 R-CRAN-bigstatsr-1.6.1-1.fc39.copr8001614.x86_64 R-CRAN-bigutilsr-0.3.4-1.fc39.copr6289130.x86_64 R-CRAN-bit-4.5.0-1.fc39.copr8046195.x86_64 R-CRAN-cli-3.6.3-1.fc39.copr7649835.x86_64 R-CRAN-codetools-0.2.20-1.fc39.copr7307081.noarch R-CRAN-colorspace-2.1.1-1.fc39.copr7795131.x86_64 R-CRAN-cowplot-1.1.3-1.fc39.copr6942336.noarch R-CRAN-data.table-1.16.2-1.fc39.copr8128145.x86_64 R-CRAN-digest-0.6.37-1.fc39.copr7936834.x86_64 R-CRAN-doParallel-1.0.17-1.fc39.copr6285248.noarch R-CRAN-doRNG-1.8.6-1.fc39.copr6285378.noarch R-CRAN-fansi-1.0.6-1.fc39.copr6735917.x86_64 R-CRAN-farver-2.1.2-1.fc39.copr7442181.x86_64 R-CRAN-ff-4.5.0-1.fc39.copr8046263.x86_64 R-CRAN-flock-0.7-3.fc39.copr6283008.x86_64 R-CRAN-foreach-1.5.2-1.fc39.copr6282916.noarch R-CRAN-ggplot2-3.5.1-1.fc39.copr7342639.noarch R-CRAN-glue-1.8.0-1.fc39.copr8094211.x86_64 R-CRAN-gtable-0.3.6-1.fc39.copr8178682.noarch R-CRAN-isoband-0.2.7-1.fc39.copr6280488.x86_64 R-CRAN-iterators-1.0.14-1.fc39.copr6279403.noarch R-CRAN-labeling-0.4.3-1.fc39.copr6354313.noarch R-CRAN-lattice-0.22.6-1.fc39.copr7307082.x86_64 R-CRAN-lifecycle-1.0.4-1.fc39.copr6614518.noarch R-CRAN-magrittr-2.0.3-1.fc39.copr6279321.x86_64 R-CRAN-mgcv-1.9.1-1.fc39.copr6775870.x86_64 R-CRAN-munsell-0.5.1-1.fc39.copr7306785.noarch R-CRAN-nabor-0.5.0-1.fc39.copr6286869.x86_64 R-CRAN-nlme-3.1.166-1.fc39.copr7936970.x86_64 R-CRAN-parallelly-1.39.0-1.fc39.copr8230096.x86_64 R-CRAN-pillar-1.9.0-1.fc39.copr6286818.noarch R-CRAN-pkgconfig-2.0.3-3.fc39.copr6279322.noarch R-CRAN-ps-1.8.1-1.fc39.copr8184952.x86_64 R-CRAN-rlang-1.1.4-1.fc39.copr7531082.x86_64 R-CRAN-rmio-0.4.0-1.fc39.copr6285381.noarch R-CRAN-rngtools-1.5.2-1.fc39.copr8100552.noarch R-CRAN-robustbase-0.99.4.1-1.fc39.copr8086707.x86_64 R-CRAN-roptim-0.1.6-1.fc39.copr6285852.x86_64 R-CRAN-runonce-0.2.3-1.fc39.copr8100408.noarch R-CRAN-scales-1.3.0-1.fc39.copr6704012.noarch R-CRAN-tibble-3.2.1-1.fc39.copr6288598.x86_64 R-CRAN-triebeard-0.4.1-1.fc39.copr6282958.x86_64 R-CRAN-urltools-1.7.3-3.fc39.copr6285263.x86_64 R-CRAN-utf8-1.2.4-1.fc39.copr6555966.x86_64 R-CRAN-vctrs-0.6.5-1.fc39.copr6715464.x86_64 R-CRAN-viridisLite-0.4.2-1.fc39.copr6279312.noarch R-CRAN-withr-3.0.2-1.fc39.copr8184963.noarch R-core-4.3.3-2.fc39.x86_64 R-core-devel-4.3.3-2.fc39.x86_64 R-devel-4.3.3-2.fc39.x86_64 R-java-4.3.3-2.fc39.x86_64 R-java-devel-4.3.3-2.fc39.x86_64 R-littler-0.3.19-1.fc39.x86_64 R-rpm-macros-1.2.1-7.fc39.noarch abattis-cantarell-vf-fonts-0.301-10.fc39.noarch alsa-lib-1.2.12-1.fc39.x86_64 annobin-docs-12.60-1.fc39.noarch annobin-plugin-gcc-12.60-1.fc39.x86_64 avahi-libs-0.8-24.fc39.x86_64 brotli-1.1.0-1.fc39.x86_64 brotli-devel-1.1.0-1.fc39.x86_64 bzip2-devel-1.0.8-16.fc39.x86_64 cairo-1.18.0-1.fc39.x86_64 cmake-filesystem-3.30.5-1.fc39.x86_64 copy-jdk-configs-4.1-3.fc39.noarch cpp-13.3.1-3.fc39.x86_64 crypto-policies-scripts-20231204-1.git1e3a2e4.fc39.noarch cups-libs-1:2.4.11-1.fc39.x86_64 dbus-libs-1:1.14.10-1.fc39.x86_64 default-fonts-core-sans-4.0-9.fc39.noarch desktop-file-utils-0.26-9.fc39.x86_64 emacs-filesystem-1:29.4-2.fc39.noarch expat-2.6.3-1.fc39.x86_64 flexiblas-3.4.4-1.fc39.x86_64 flexiblas-devel-3.4.4-1.fc39.x86_64 flexiblas-netlib-3.4.4-1.fc39.x86_64 flexiblas-netlib64-3.4.4-1.fc39.x86_64 flexiblas-openblas-openmp-3.4.4-1.fc39.x86_64 flexiblas-openblas-openmp64-3.4.4-1.fc39.x86_64 fontconfig-2.14.2-6.fc39.x86_64 fontconfig-devel-2.14.2-6.fc39.x86_64 fonts-filesystem-1:2.0.5-12.fc39.noarch freetype-2.13.1-2.fc39.x86_64 freetype-devel-2.13.1-2.fc39.x86_64 fribidi-1.0.13-2.fc39.x86_64 gc-8.2.2-4.fc39.x86_64 gcc-13.3.1-3.fc39.x86_64 gcc-c++-13.3.1-3.fc39.x86_64 gcc-gfortran-13.3.1-3.fc39.x86_64 gcc-plugin-annobin-13.3.1-3.fc39.x86_64 gettext-0.22-2.fc39.x86_64 gettext-envsubst-0.22-2.fc39.x86_64 gettext-libs-0.22-2.fc39.x86_64 gettext-runtime-0.22-2.fc39.x86_64 glib2-2.78.6-1.fc39.x86_64 glib2-devel-2.78.6-1.fc39.x86_64 glibc-devel-2.38-19.fc39.x86_64 glibc-headers-x86-2.38-19.fc39.noarch gnutls-3.8.6-1.fc39.x86_64 google-noto-fonts-common-20240101-1.fc39.noarch google-noto-sans-vf-fonts-20240101-1.fc39.noarch graphite2-1.3.14-12.fc39.x86_64 graphite2-devel-1.3.14-12.fc39.x86_64 guile22-2.2.7-9.fc39.x86_64 harfbuzz-8.2.1-2.fc39.x86_64 harfbuzz-devel-8.2.1-2.fc39.x86_64 harfbuzz-icu-8.2.1-2.fc39.x86_64 java-17-openjdk-1:17.0.13.0.11-3.fc39.x86_64 java-17-openjdk-devel-1:17.0.13.0.11-3.fc39.x86_64 java-17-openjdk-headless-1:17.0.13.0.11-3.fc39.x86_64 javapackages-filesystem-6.1.0-10.fc39.noarch jbigkit-libs-2.1-26.fc39.x86_64 kernel-headers-6.11.3-100.fc39.x86_64 libICE-1.0.10-11.fc39.x86_64 libRmath-4.3.3-2.fc39.x86_64 libRmath-devel-4.3.3-2.fc39.x86_64 libSM-1.2.3-13.fc39.x86_64 libX11-1.8.9-1.fc39.x86_64 libX11-common-1.8.9-1.fc39.noarch libX11-devel-1.8.9-1.fc39.x86_64 libX11-xcb-1.8.9-1.fc39.x86_64 libXau-1.0.11-3.fc39.x86_64 libXau-devel-1.0.11-3.fc39.x86_64 libXcomposite-0.4.5-10.fc39.x86_64 libXext-1.3.5-3.fc39.x86_64 libXft-2.3.8-3.fc39.x86_64 libXft-devel-2.3.8-3.fc39.x86_64 libXi-1.8.1-2.fc39.x86_64 libXmu-1.1.4-3.fc39.x86_64 libXrender-0.9.11-3.fc39.x86_64 libXrender-devel-0.9.11-3.fc39.x86_64 libXt-1.2.1-5.fc39.x86_64 libXtst-1.2.4-3.fc39.x86_64 libb2-0.98.1-9.fc39.x86_64 libblkid-devel-2.39.4-1.fc39.x86_64 libdatrie-0.2.13-7.fc39.x86_64 libffi-devel-3.4.4-4.fc39.x86_64 libfontenc-1.1.6-3.fc39.x86_64 libgfortran-13.3.1-3.fc39.x86_64 libicu-73.2-2.fc39.x86_64 libicu-devel-73.2-2.fc39.x86_64 libjpeg-turbo-2.1.4-3.fc39.x86_64 liblerc-4.0.0-4.fc39.x86_64 libmount-devel-2.39.4-1.fc39.x86_64 libmpc-1.3.1-3.fc39.x86_64 libpng-2:1.6.37-15.fc39.x86_64 libpng-devel-2:1.6.37-15.fc39.x86_64 libquadmath-13.3.1-3.fc39.x86_64 libquadmath-devel-13.3.1-3.fc39.x86_64 libselinux-devel-3.5-5.fc39.x86_64 libsepol-devel-3.5-2.fc39.x86_64 libstdc++-devel-13.3.1-3.fc39.x86_64 libthai-0.1.29-6.fc39.x86_64 libtiff-4.4.0-10.fc39.x86_64 libtirpc-devel-1.3.6-0.fc39.x86_64 libwebp-1.3.2-2.fc39.x86_64 libxcb-1.13.1-12.fc39.x86_64 libxcb-devel-1.13.1-12.fc39.x86_64 libxcrypt-devel-4.4.36-2.fc39.x86_64 libxml2-devel-2.10.4-3.fc39.x86_64 lksctp-tools-1.0.20-1.fc39.x86_64 lua-5.4.6-3.fc39.x86_64 lua-posix-36.2.1-3.fc39.x86_64 make-1:4.4.1-2.fc39.x86_64 mkfontscale-1.2.2-4.fc39.x86_64 mpdecimal-2.5.1-7.fc39.x86_64 nettle-3.9.1-2.fc39.x86_64 nspr-4.35.0-24.fc39.x86_64 nss-3.105.0-1.fc39.x86_64 nss-softokn-3.105.0-1.fc39.x86_64 nss-softokn-freebl-3.105.0-1.fc39.x86_64 nss-sysinit-3.105.0-1.fc39.x86_64 nss-util-3.105.0-1.fc39.x86_64 openblas-0.3.21-6.fc39.x86_64 openblas-openmp-0.3.21-6.fc39.x86_64 openblas-openmp64-0.3.21-6.fc39.x86_64 pango-1.51.0-1.fc39.x86_64 pcre2-devel-10.42-1.fc39.2.x86_64 pcre2-utf16-10.42-1.fc39.2.x86_64 pcre2-utf32-10.42-1.fc39.2.x86_64 pixman-0.42.2-2.fc39.x86_64 python-pip-wheel-23.2.1-2.fc39.noarch python3-3.12.7-1.fc39.x86_64 python3-libs-3.12.7-1.fc39.x86_64 python3-setuptools-67.7.2-8.fc39.noarch sysprof-capture-devel-45.1-1.fc39.x86_64 tcl-1:8.6.12-5.fc39.x86_64 tcl-devel-1:8.6.12-5.fc39.x86_64 tk-1:8.6.12-5.fc39.x86_64 tk-devel-1:8.6.12-5.fc39.x86_64 tre-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 tre-common-0.8.0-41.20140228gitc2f5d13.fc39.noarch tre-devel-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 ttmkfdir-3.0.9-69.fc39.x86_64 tzdata-2024a-2.fc39.noarch tzdata-java-2024a-2.fc39.noarch xdg-utils-1.1.3-15.fc39.noarch xml-common-0.6.3-61.fc39.noarch xorg-x11-fonts-Type1-7.5-36.fc39.noarch xorg-x11-proto-devel-2023.2-2.fc39.noarch xz-devel-5.4.4-1.fc39.x86_64 zlib-devel-1.2.13-4.fc39.x86_64 Complete! Finish: build setup for R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.src.rpm Start: rpmbuild R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.zGgJjK + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf bigsnpr + /usr/bin/mkdir -p bigsnpr + cd bigsnpr + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/bigsnpr_1.12.18.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + rm -rf /builddir/build/BUILD/bigsnpr-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/bigsnpr-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d bigsnpr/src ']' + find bigsnpr/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';' + '[' -d bigsnpr/src ']' + find bigsnpr/src/Makevars -type f -exec sed -i s@-g0@@g '{}' ';' + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.0QSWc1 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bigsnpr + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.NvfUTU + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.x86_64 ++ dirname /builddir/build/BUILDROOT/R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bigsnpr + mkdir -p /builddir/build/BUILDROOT/R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.x86_64/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.x86_64/usr/local/lib/R/library bigsnpr * installing *source* package ‘bigsnpr’ ... ** package ‘bigsnpr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 13.3.1 20240913 (Red Hat 13.3.1-3)’ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bed-acc-xptr.cpp -o bed-acc-xptr.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bed-fun.cpp -o bed-fun.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bed-mat-acc.cpp -o bed-mat-acc.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bed-prod-vec.cpp -o bed-prod-vec.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c clumping-bed.cpp -o clumping-bed.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c clumping-cached.cpp -o clumping-cached.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c clumping.cpp -o clumping.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c colstats.cpp -o colstats.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c copy-subset.cpp -o copy-subset.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c corr.cpp -o corr.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c corr_with_cov.cpp -o corr_with_cov.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c impute-simple.cpp -o impute-simple.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c lassosum2.cpp -o lassosum2.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ld-scores-sfbm.cpp -o ld-scores-sfbm.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ld-scores.cpp -o ld-scores.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ldpred2-auto.cpp -o ldpred2-auto.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ldpred2-sampling.cpp -o ldpred2-sampling.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ldpred2.cpp -o ldpred2.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c multLinReg.cpp -o multLinReg.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c prod-bgen.cpp -o prod-bgen.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c project-utils.cpp -o project-utils.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c read-bgen.cpp -o read-bgen.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c read-plink.cpp -o read-plink.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sp-colsumssq-sym.cpp -o sp-colsumssq-sym.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c split-LD.cpp -o split-LD.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c write-plink.cpp -o write-plink.o g++ -std=gnu++17 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o bigsnpr.so RcppExports.o bed-acc-xptr.o bed-fun.o bed-mat-acc.o bed-prod-vec.o clumping-bed.o clumping-cached.o clumping.o colstats.o copy-subset.o corr.o corr_with_cov.o impute-simple.o lassosum2.o ld-scores-sfbm.o ld-scores.o ldpred2-auto.o ldpred2-sampling.o ldpred2.o multLinReg.o prod-bgen.o project-utils.o read-bgen.o read-plink.o sp-colsumssq-sym.o split-LD.o write-plink.o -fopenmp -lflexiblas -lgfortran -lm -lquadmath -lz -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILDROOT/R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.x86_64/usr/local/lib/R/library/00LOCK-bigsnpr/00new/bigsnpr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘bigsnpr’ finding HTML links ... done LD.wiki34 html LDpred2 html SCT html bed-class html bed-mat-acc html bed-methods html bed_MAF html bed_counts html bed_cprodVec html bed_prodVec html bed_projectPCA html bed_projectSelfPCA html bed_randomSVD html bed_scaleBinom html bed_tcrossprodSelf html bigSNP-class html bigsnpr-package html coef_to_liab html download_1000G html download_beagle html download_plink html reexports html same_ref html seq_log html snp_MAF html snp_MAX3 html snp_PRS html snp_ancestry_summary html snp_asGeneticPos html snp_asGeneticPos2 html snp_attach html snp_attachExtdata html snp_autoSVD html snp_beagleImpute html snp_clumping html snp_codes html snp_cor html snp_fake html snp_fastImpute html snp_fastImputeSimple html snp_fst html snp_gc html snp_getSampleInfos html snp_lassosum2 html snp_ld_scores html snp_ldsc html snp_ldsplit html snp_manhattan html snp_match html snp_modifyBuild html snp_pcadapt html snp_plinkIBDQC html snp_plinkKINGQC html snp_plinkQC html snp_plinkRmSamples html snp_prodBGEN html snp_qq html snp_readBGEN html snp_readBGI html snp_readBed html snp_save html snp_scaleBinom html snp_simuPheno html snp_split html snp_subset html snp_thr_correct html snp_writeBed html sub_bed html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bigsnpr) + test -d bigsnpr/src + cd bigsnpr/src + rm -f RcppExports.o bed-acc-xptr.o bed-fun.o bed-mat-acc.o bed-prod-vec.o clumping-bed.o clumping-cached.o clumping.o colstats.o copy-subset.o corr.o corr_with_cov.o impute-simple.o lassosum2.o ld-scores-sfbm.o ld-scores.o ldpred2-auto.o ldpred2-sampling.o ldpred2.o multLinReg.o prod-bgen.o project-utils.o read-bgen.o read-plink.o sp-colsumssq-sym.o split-LD.o write-plink.o bigsnpr.so + rm -f /builddir/build/BUILDROOT/R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.x86_64/usr/local/lib/R/library/R.css + find /builddir/build/BUILDROOT/R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.x86_64/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILDROOT/R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.x86_64@@g '{}' ';' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.12.18-1.fc39.copr8317474 --unique-debug-suffix -1.12.18-1.fc39.copr8317474.x86_64 --unique-debug-src-base R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/bigsnpr find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.x86_64 233 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.x86_64 Provides: R-CRAN-bigsnpr = 1.12.18-1.fc39.copr8317474 R-CRAN-bigsnpr(x86-64) = 1.12.18-1.fc39.copr8317474 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.4)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: R-CRAN-bigsnpr-debugsource-1.12.18-1.fc39.copr8317474.x86_64 Provides: R-CRAN-bigsnpr-debugsource = 1.12.18-1.fc39.copr8317474 R-CRAN-bigsnpr-debugsource(x86-64) = 1.12.18-1.fc39.copr8317474 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-CRAN-bigsnpr-debuginfo-1.12.18-1.fc39.copr8317474.x86_64 Provides: R-CRAN-bigsnpr-debuginfo = 1.12.18-1.fc39.copr8317474 R-CRAN-bigsnpr-debuginfo(x86-64) = 1.12.18-1.fc39.copr8317474 debuginfo(build-id) = bfdf8eafb260dd4d4140a35a983b7c1b8af90222 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-CRAN-bigsnpr-debugsource(x86-64) = 1.12.18-1.fc39.copr8317474 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.x86_64 Wrote: /builddir/build/RPMS/R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-bigsnpr-debugsource-1.12.18-1.fc39.copr8317474.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-bigsnpr-debuginfo-1.12.18-1.fc39.copr8317474.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.VnVba7 + umask 022 + cd /builddir/build/BUILD + cd bigsnpr + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.NbHVid + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/bigsnpr-SPECPARTS + rm -rf bigsnpr bigsnpr.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.src.rpm Finish: build phase for R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1732672121.266430/root/var/log/dnf.log /var/lib/mock/fedora-39-x86_64-1732672121.266430/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1732672121.266430/root/var/log/dnf.rpm.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-bigsnpr-1.12.18-1.fc39.copr8317474.src.rpm) Config(child) 2 minutes 44 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-CRAN-bigsnpr-debugsource", "epoch": null, "version": "1.12.18", "release": "1.fc39.copr8317474", "arch": "x86_64" }, { "name": "R-CRAN-bigsnpr-debuginfo", "epoch": null, "version": "1.12.18", "release": "1.fc39.copr8317474", "arch": "x86_64" }, { "name": "R-CRAN-bigsnpr", "epoch": null, "version": "1.12.18", "release": "1.fc39.copr8317474", "arch": "x86_64" }, { "name": "R-CRAN-bigsnpr", "epoch": null, "version": "1.12.18", "release": "1.fc39.copr8317474", "arch": "src" } ] } RPMResults finished