pfam_plot {BioVizSeq} | R Documentation |
Visualization of domain in pfam result file
pfam_plot(
pfam_file,
the_order = NULL,
domain_select = NULL,
shape = "RoundRect",
r = 0.3,
legend_size = 15,
domain_color = NULL
)
pfam_file |
The path of meme file or mast file. |
the_order |
The path of order file. A List of Gene ID , One ID Per Line. |
domain_select |
The domain ID which you want to align with. |
shape |
RoundRect or Rect. |
r |
The radius of rounded corners. |
legend_size |
The size of legend. |
domain_color |
The color set of domain. |
p
Shiqi Zhao
pfam_path <- system.file("extdata", "iprscan.tsv", package = "BioVizSeq")
order_path <- system.file("extdata", "order.csv", package = "BioVizSeq")
pfam_plot(pfam_path)
pfam_plot(pfam_path, the_order=order_path)