Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c18c' (ED25519) to the list of known hosts. cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-s3fylofy/R-CRAN-PhenotypeR rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading PhenotypeR_0.1.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o PhenotypeR_0.1.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/iucar/cran/R-CRAN-PhenotypeR/PhenotypeR_0.1.0.tar.gz/md5/b30531d4efb68f264e768ab53c4fbbd7/PhenotypeR_0.1.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 533k 100 533k 0 0 7251k 0 --:--:-- --:--:-- --:--:-- 7309k INFO: Reading stdout from command: md5sum PhenotypeR_0.1.0.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-s3fylofy/R-CRAN-PhenotypeR/R-CRAN-PhenotypeR.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-s3fylofy/R-CRAN-PhenotypeR --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1733536178.680108 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.9 starting (python version = 3.13.0, NVR = mock-5.9-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-s3fylofy/R-CRAN-PhenotypeR/R-CRAN-PhenotypeR.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-s3fylofy/R-CRAN-PhenotypeR --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1733536178.680108 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-s3fylofy/R-CRAN-PhenotypeR/R-CRAN-PhenotypeR.spec) Config(fedora-39-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.9 INFO: Mock Version: 5.9 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1733536178.680108/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf4 detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 python3-dnf-4.22.0-1.fc41.noarch python3-dnf-plugins-core-4.10.0-1.fc41.noarch dnf5-5.2.7.0-1.fc41.x86_64 dnf5-plugins-5.2.7.0-1.fc41.x86_64 Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 31 MB/s | 12 MB 00:00 fedora 588 kB/s | 1.7 MB 00:03 Errors during downloading metadata for repository 'fedora': - Downloading successful, but checksum doesn't match. Calculated: d317d2566c2db6e1a6f4622b51438d6a542564c8c4e59f6343fd0221f45191710e0a60088c57b6edbda785c06fafb931b602258297046d18f13df66c78d7d9d9(sha512) Expected: 7680871ee152d34004babf9a6bcc106af67e363e0c418672fbc84caeae56386f04a4cddbf909ba8faa31fe64676e96bb479c42a2ad0d7a0a7d5d7ab16fdd78e0(sha512) - Zchunk header checksum didn't match expected checksum - Downloading successful, but checksum doesn't match. Calculated: 446e44b378e58f89f5b553b7142d8a426b928a0cc77a57127a739c3d76b895af(sha256) Expected: e656f7cad33729c167f7e95017efaf527354ae1cc33f5be340f05b386a8f12a6(sha256) Error: Failed to download metadata for repo 'fedora': Checksum error /var/lib/mock/fedora-39-x86_64-1733536178.680108/root/var/cache/dnf/fedora-845d89688cb28f31/repodata/bdd852babb8d6f012c9522ad194b37fa7df83d3ad1a9f4b2c2140e19528b9c96-primary.xml.zck: Unable to read zchunk lead WARNING: DNF4 command failed, retrying, attempt #2, sleeping 10s No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 35 kB/s | 1.5 kB 00:00 fedora 24 MB/s | 34 MB 00:01 updates 17 MB/s | 12 MB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.26-1.fc39 updates 1.8 M bzip2 x86_64 1.0.8-16.fc39 fedora 52 k coreutils x86_64 9.3-7.fc39 updates 1.1 M cpio x86_64 2.14-4.fc39 fedora 279 k diffutils x86_64 3.10-3.fc39 fedora 398 k fedora-release-common noarch 39-36 updates 19 k findutils x86_64 1:4.9.0-6.fc39 updates 490 k gawk x86_64 5.2.2-2.fc39 fedora 1.1 M glibc-minimal-langpack x86_64 2.38-19.fc39 updates 65 k grep x86_64 3.11-3.fc39 fedora 298 k gzip x86_64 1.12-6.fc39 fedora 166 k info x86_64 7.0.3-3.fc39 fedora 182 k patch x86_64 2.7.6-22.fc39 fedora 125 k redhat-rpm-config noarch 266-1.fc39 updates 78 k rpm-build x86_64 4.19.1.1-1.fc39 updates 78 k sed x86_64 4.8-14.fc39 fedora 306 k shadow-utils x86_64 2:4.14.0-2.fc39 updates 1.3 M tar x86_64 2:1.35-2.fc39 fedora 864 k unzip x86_64 6.0-62.fc39 fedora 184 k util-linux x86_64 2.39.4-1.fc39 updates 1.2 M which x86_64 2.21-40.fc39 fedora 42 k xz x86_64 5.4.4-1.fc39 fedora 556 k Installing dependencies: alternatives x86_64 1.26-1.fc39 updates 39 k ansible-srpm-macros noarch 1-12.fc39 updates 21 k audit-libs x86_64 3.1.5-1.fc39 updates 123 k authselect x86_64 1.4.3-1.fc39 fedora 149 k authselect-libs x86_64 1.4.3-1.fc39 fedora 249 k basesystem noarch 11-18.fc39 fedora 7.2 k binutils x86_64 2.40-14.fc39 updates 5.6 M binutils-gold x86_64 2.40-14.fc39 updates 795 k bzip2-libs x86_64 1.0.8-16.fc39 fedora 41 k ca-certificates noarch 2024.2.69_v8.0.401-1.0.fc39 updates 871 k coreutils-common x86_64 9.3-7.fc39 updates 2.1 M cracklib x86_64 2.9.11-2.fc39 fedora 94 k crypto-policies noarch 20231204-1.git1e3a2e4.fc39 updates 100 k curl x86_64 8.2.1-5.fc39 updates 344 k cyrus-sasl-lib x86_64 2.1.28-11.fc39 fedora 793 k debugedit x86_64 5.0-12.fc39 updates 79 k dwz x86_64 0.15-3.fc39 fedora 134 k ed x86_64 1.19-4.fc39 fedora 79 k efi-srpm-macros noarch 5-9.fc39 fedora 22 k elfutils x86_64 0.192-4.fc39 updates 574 k elfutils-debuginfod-client x86_64 0.192-4.fc39 updates 43 k elfutils-default-yama-scope noarch 0.192-4.fc39 updates 12 k elfutils-libelf x86_64 0.192-4.fc39 updates 208 k elfutils-libs x86_64 0.192-4.fc39 updates 267 k fedora-gpg-keys noarch 39-2 updates 130 k fedora-release noarch 39-36 updates 8.6 k fedora-release-identity-basic noarch 39-36 updates 9.4 k fedora-repos noarch 39-2 updates 9.3 k file x86_64 5.44-5.fc39 fedora 49 k file-libs x86_64 5.44-5.fc39 fedora 729 k filesystem x86_64 3.18-6.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k forge-srpm-macros noarch 0.3.1-1.fc39 updates 19 k fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k gdb-minimal x86_64 15.1-1.fc39 updates 4.3 M gdbm-libs x86_64 1:1.23-4.fc39 fedora 56 k ghc-srpm-macros noarch 1.6.1-2.fc39 fedora 7.8 k glibc x86_64 2.38-19.fc39 updates 2.1 M glibc-common x86_64 2.38-19.fc39 updates 344 k glibc-gconv-extra x86_64 2.38-19.fc39 updates 1.6 M gmp x86_64 1:6.2.1-5.fc39 fedora 313 k gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k go-srpm-macros noarch 3.5.0-1.fc39 updates 28 k jansson x86_64 2.13.1-7.fc39 fedora 44 k json-c x86_64 0.17-1.fc39 fedora 43 k kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k keyutils-libs x86_64 1.6.3-1.fc39 updates 31 k krb5-libs x86_64 1.21.3-2.fc39 updates 766 k libacl x86_64 2.3.1-9.fc39 updates 23 k libarchive x86_64 3.7.1-3.fc39 updates 407 k libattr x86_64 2.5.1-8.fc39 fedora 18 k libblkid x86_64 2.39.4-1.fc39 updates 116 k libbrotli x86_64 1.1.0-1.fc39 fedora 336 k libcap x86_64 2.48-9.fc39 updates 68 k libcap-ng x86_64 0.8.3-8.fc39 fedora 32 k libcom_err x86_64 1.47.0-2.fc39 fedora 26 k libcurl x86_64 8.2.1-5.fc39 updates 322 k libdb x86_64 5.3.28-56.fc39 fedora 760 k libeconf x86_64 0.5.2-2.fc39 updates 30 k libevent x86_64 2.1.12-9.fc39 fedora 258 k libfdisk x86_64 2.39.4-1.fc39 updates 161 k libffi x86_64 3.4.4-4.fc39 fedora 40 k libgcc x86_64 13.3.1-3.fc39 updates 120 k libgomp x86_64 13.3.1-3.fc39 updates 329 k libidn2 x86_64 2.3.7-1.fc39 updates 119 k libmount x86_64 2.39.4-1.fc39 updates 154 k libnghttp2 x86_64 1.55.1-5.fc39 updates 75 k libnsl2 x86_64 2.0.0-6.fc39 fedora 30 k libpkgconf x86_64 1.9.5-2.fc39 fedora 38 k libpsl x86_64 0.21.2-4.fc39 fedora 63 k libpwquality x86_64 1.4.5-6.fc39 fedora 120 k libselinux x86_64 3.5-5.fc39 fedora 87 k libsemanage x86_64 3.5-4.fc39 fedora 120 k libsepol x86_64 3.5-2.fc39 fedora 324 k libsigsegv x86_64 2.14-5.fc39 fedora 27 k libsmartcols x86_64 2.39.4-1.fc39 updates 67 k libssh x86_64 0.10.6-2.fc39 updates 212 k libssh-config noarch 0.10.6-2.fc39 updates 9.0 k libstdc++ x86_64 13.3.1-3.fc39 updates 870 k libtasn1 x86_64 4.19.0-3.fc39 fedora 74 k libtirpc x86_64 1.3.6-0.fc39 updates 94 k libtool-ltdl x86_64 2.4.7-7.fc39 fedora 36 k libunistring x86_64 1.1-5.fc39 fedora 543 k libutempter x86_64 1.2.1-10.fc39 fedora 26 k libuuid x86_64 2.39.4-1.fc39 updates 28 k libverto x86_64 0.3.2-6.fc39 fedora 20 k libxcrypt x86_64 4.4.36-2.fc39 fedora 119 k libxml2 x86_64 2.10.4-3.fc39 fedora 701 k libzstd x86_64 1.5.6-1.fc39 updates 312 k lua-libs x86_64 5.4.6-3.fc39 fedora 133 k lua-srpm-macros noarch 1-13.fc39 updates 8.7 k lz4-libs x86_64 1.9.4-4.fc39 fedora 67 k mpfr x86_64 4.2.0-3.fc39 fedora 344 k ncurses-base noarch 6.4-7.20230520.fc39.1 updates 88 k ncurses-libs x86_64 6.4-7.20230520.fc39.1 updates 336 k ocaml-srpm-macros noarch 8-2.fc39 fedora 14 k openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k openldap x86_64 2.6.7-1.fc39 updates 254 k openssl-libs x86_64 1:3.1.4-4.fc39 updates 2.2 M p11-kit x86_64 0.25.5-1.fc39 updates 515 k p11-kit-trust x86_64 0.25.5-1.fc39 updates 138 k package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k pam x86_64 1.5.3-3.fc39 updates 542 k pam-libs x86_64 1.5.3-3.fc39 updates 56 k pcre2 x86_64 10.42-1.fc39.2 fedora 233 k pcre2-syntax noarch 10.42-1.fc39.2 fedora 143 k perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k pkgconf x86_64 1.9.5-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k pkgconf-pkg-config x86_64 1.9.5-2.fc39 fedora 9.6 k popt x86_64 1.19-3.fc39 fedora 66 k publicsuffix-list-dafsa noarch 20240107-1.fc39 updates 58 k pyproject-srpm-macros noarch 1.16.0-1.fc39 updates 14 k python-srpm-macros noarch 3.12-8.fc39 updates 23 k qt5-srpm-macros noarch 5.15.14-2.fc39 updates 8.9 k qt6-srpm-macros noarch 6.6.2-1.fc39 updates 8.9 k readline x86_64 8.2-6.fc39 updates 212 k rpm x86_64 4.19.1.1-1.fc39 updates 538 k rpm-build-libs x86_64 4.19.1.1-1.fc39 updates 95 k rpm-libs x86_64 4.19.1.1-1.fc39 updates 312 k rpm-sequoia x86_64 1.7.0-1.fc39 updates 904 k rpmautospec-rpm-macros noarch 0.7.3-1.fc39 updates 11 k rust-srpm-macros noarch 26.3-1.fc39 updates 13 k setup noarch 2.14.4-1.fc39 fedora 154 k sqlite-libs x86_64 3.42.0-7.fc39 fedora 678 k systemd-libs x86_64 254.20-1.fc39 updates 681 k util-linux-core x86_64 2.39.4-1.fc39 updates 507 k xxhash-libs x86_64 0.8.2-4.fc39 updates 37 k xz-libs x86_64 5.4.4-1.fc39 fedora 108 k zip x86_64 3.0-39.fc39 fedora 266 k zlib x86_64 1.2.13-4.fc39 fedora 94 k zstd x86_64 1.5.6-1.fc39 updates 479 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 154 Packages Total download size: 52 M Installed size: 180 M Downloading Packages: (1/154): basesystem-11-18.fc39.noarch.rpm 112 kB/s | 7.2 kB 00:00 (2/154): authselect-libs-1.4.3-1.fc39.x86_64.rp 2.6 MB/s | 249 kB 00:00 (3/154): bzip2-1.0.8-16.fc39.x86_64.rpm 1.2 MB/s | 52 kB 00:00 (4/154): bzip2-libs-1.0.8-16.fc39.x86_64.rpm 1.5 MB/s | 41 kB 00:00 (5/154): cpio-2.14-4.fc39.x86_64.rpm 5.2 MB/s | 279 kB 00:00 (6/154): cracklib-2.9.11-2.fc39.x86_64.rpm 2.3 MB/s | 94 kB 00:00 (7/154): cyrus-sasl-lib-2.1.28-11.fc39.x86_64.r 29 MB/s | 793 kB 00:00 (8/154): diffutils-3.10-3.fc39.x86_64.rpm 13 MB/s | 398 kB 00:00 (9/154): dwz-0.15-3.fc39.x86_64.rpm 9.6 MB/s | 134 kB 00:00 (10/154): ed-1.19-4.fc39.x86_64.rpm 5.8 MB/s | 79 kB 00:00 (11/154): efi-srpm-macros-5-9.fc39.noarch.rpm 1.8 MB/s | 22 kB 00:00 (12/154): file-5.44-5.fc39.x86_64.rpm 2.0 MB/s | 49 kB 00:00 (13/154): file-libs-5.44-5.fc39.x86_64.rpm 20 MB/s | 729 kB 00:00 (14/154): filesystem-3.18-6.fc39.x86_64.rpm 29 MB/s | 1.1 MB 00:00 (15/154): fonts-srpm-macros-2.0.5-12.fc39.noarc 947 kB/s | 26 kB 00:00 (16/154): fpc-srpm-macros-1.3-8.fc39.noarch.rpm 620 kB/s | 7.4 kB 00:00 (17/154): gawk-5.2.2-2.fc39.x86_64.rpm 39 MB/s | 1.1 MB 00:00 (18/154): gdbm-libs-1.23-4.fc39.x86_64.rpm 1.9 MB/s | 56 kB 00:00 (19/154): ghc-srpm-macros-1.6.1-2.fc39.noarch.r 354 kB/s | 7.8 kB 00:00 (20/154): gmp-6.2.1-5.fc39.x86_64.rpm 12 MB/s | 313 kB 00:00 (21/154): gnat-srpm-macros-6-3.fc39.noarch.rpm 465 kB/s | 8.8 kB 00:00 (22/154): grep-3.11-3.fc39.x86_64.rpm 16 MB/s | 298 kB 00:00 (23/154): gzip-1.12-6.fc39.x86_64.rpm 11 MB/s | 166 kB 00:00 (24/154): info-7.0.3-3.fc39.x86_64.rpm 12 MB/s | 182 kB 00:00 (25/154): jansson-2.13.1-7.fc39.x86_64.rpm 2.0 MB/s | 44 kB 00:00 (26/154): json-c-0.17-1.fc39.x86_64.rpm 2.3 MB/s | 43 kB 00:00 (27/154): kernel-srpm-macros-1.0-20.fc39.noarch 868 kB/s | 10 kB 00:00 (28/154): libattr-2.5.1-8.fc39.x86_64.rpm 1.3 MB/s | 18 kB 00:00 (29/154): libbrotli-1.1.0-1.fc39.x86_64.rpm 20 MB/s | 336 kB 00:00 (30/154): libcap-ng-0.8.3-8.fc39.x86_64.rpm 2.1 MB/s | 32 kB 00:00 (31/154): libcom_err-1.47.0-2.fc39.x86_64.rpm 1.2 MB/s | 26 kB 00:00 (32/154): libdb-5.3.28-56.fc39.x86_64.rpm 25 MB/s | 760 kB 00:00 (33/154): libevent-2.1.12-9.fc39.x86_64.rpm 14 MB/s | 258 kB 00:00 (34/154): libffi-3.4.4-4.fc39.x86_64.rpm 3.2 MB/s | 40 kB 00:00 (35/154): libnsl2-2.0.0-6.fc39.x86_64.rpm 2.4 MB/s | 30 kB 00:00 (36/154): libpkgconf-1.9.5-2.fc39.x86_64.rpm 3.1 MB/s | 38 kB 00:00 (37/154): libpsl-0.21.2-4.fc39.x86_64.rpm 5.0 MB/s | 63 kB 00:00 (38/154): libpwquality-1.4.5-6.fc39.x86_64.rpm 8.7 MB/s | 120 kB 00:00 (39/154): libselinux-3.5-5.fc39.x86_64.rpm 6.6 MB/s | 87 kB 00:00 (40/154): libsemanage-3.5-4.fc39.x86_64.rpm 9.4 MB/s | 120 kB 00:00 (41/154): libsepol-3.5-2.fc39.x86_64.rpm 20 MB/s | 324 kB 00:00 (42/154): libsigsegv-2.14-5.fc39.x86_64.rpm 1.1 MB/s | 27 kB 00:00 (43/154): libtasn1-4.19.0-3.fc39.x86_64.rpm 5.6 MB/s | 74 kB 00:00 (44/154): libtool-ltdl-2.4.7-7.fc39.x86_64.rpm 3.0 MB/s | 36 kB 00:00 (45/154): libunistring-1.1-5.fc39.x86_64.rpm 29 MB/s | 543 kB 00:00 (46/154): libutempter-1.2.1-10.fc39.x86_64.rpm 2.2 MB/s | 26 kB 00:00 (47/154): libverto-0.3.2-6.fc39.x86_64.rpm 1.7 MB/s | 20 kB 00:00 (48/154): libxcrypt-4.4.36-2.fc39.x86_64.rpm 8.7 MB/s | 119 kB 00:00 (49/154): libxml2-2.10.4-3.fc39.x86_64.rpm 35 MB/s | 701 kB 00:00 (50/154): lua-libs-5.4.6-3.fc39.x86_64.rpm 8.7 MB/s | 133 kB 00:00 (51/154): lz4-libs-1.9.4-4.fc39.x86_64.rpm 4.3 MB/s | 67 kB 00:00 (52/154): mpfr-4.2.0-3.fc39.x86_64.rpm 16 MB/s | 344 kB 00:00 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(154/154): zstd-1.5.6-1.fc39.x86_64.rpm 1.4 MB/s | 479 kB 00:00 -------------------------------------------------------------------------------- Total 6.2 MB/s | 52 MB 00:08 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-6.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.3.1-3.fc39.x86_64 1/154 Running scriptlet: libgcc-13.3.1-3.fc39.x86_64 1/154 Installing : crypto-policies-20231204-1.git1e3a2e4.fc39.noarc 2/154 Running scriptlet: crypto-policies-20231204-1.git1e3a2e4.fc39.noarc 2/154 Installing : rust-srpm-macros-26.3-1.fc39.noarch 3/154 Installing : qt6-srpm-macros-6.6.2-1.fc39.noarch 4/154 Installing : qt5-srpm-macros-5.15.14-2.fc39.noarch 5/154 Installing : publicsuffix-list-dafsa-20240107-1.fc39.noarch 6/154 Installing : ncurses-base-6.4-7.20230520.fc39.1.noarch 7/154 Installing : libssh-config-0.10.6-2.fc39.noarch 8/154 Installing : fedora-release-identity-basic-39-36.noarch 9/154 Installing : fedora-gpg-keys-39-2.noarch 10/154 Installing : fedora-repos-39-2.noarch 11/154 Installing : fedora-release-common-39-36.noarch 12/154 Installing : fedora-release-39-36.noarch 13/154 Installing : setup-2.14.4-1.fc39.noarch 14/154 warning: 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104/154 Installing : ca-certificates-2024.2.69_v8.0.401-1.0.fc39.noar 104/154 Running scriptlet: ca-certificates-2024.2.69_v8.0.401-1.0.fc39.noar 104/154 Installing : krb5-libs-1.21.3-2.fc39.x86_64 105/154 Installing : libtirpc-1.3.6-0.fc39.x86_64 106/154 Running scriptlet: authselect-libs-1.4.3-1.fc39.x86_64 107/154 Installing : authselect-libs-1.4.3-1.fc39.x86_64 107/154 Installing : gzip-1.12-6.fc39.x86_64 108/154 Installing : libarchive-3.7.1-3.fc39.x86_64 109/154 Installing : cracklib-2.9.11-2.fc39.x86_64 110/154 Installing : libpwquality-1.4.5-6.fc39.x86_64 111/154 Installing : authselect-1.4.3-1.fc39.x86_64 112/154 Installing : libnsl2-2.0.0-6.fc39.x86_64 113/154 Installing : pam-1.5.3-3.fc39.x86_64 114/154 Installing : libssh-0.10.6-2.fc39.x86_64 115/154 Installing : libevent-2.1.12-9.fc39.x86_64 116/154 Installing : openldap-2.6.7-1.fc39.x86_64 117/154 Installing : libcurl-8.2.1-5.fc39.x86_64 118/154 Installing : elfutils-debuginfod-client-0.192-4.fc39.x86_64 119/154 Installing : binutils-gold-2.40-14.fc39.x86_64 120/154 Running scriptlet: binutils-gold-2.40-14.fc39.x86_64 120/154 Installing : binutils-2.40-14.fc39.x86_64 121/154 Running scriptlet: binutils-2.40-14.fc39.x86_64 121/154 Installing : elfutils-0.192-4.fc39.x86_64 122/154 Installing : gdb-minimal-15.1-1.fc39.x86_64 123/154 Installing : debugedit-5.0-12.fc39.x86_64 124/154 Installing : curl-8.2.1-5.fc39.x86_64 125/154 Installing : rpm-sequoia-1.7.0-1.fc39.x86_64 126/154 Installing : rpm-libs-4.19.1.1-1.fc39.x86_64 127/154 Running scriptlet: rpm-4.19.1.1-1.fc39.x86_64 128/154 Installing : rpm-4.19.1.1-1.fc39.x86_64 128/154 Installing : efi-srpm-macros-5-9.fc39.noarch 129/154 Installing : lua-srpm-macros-1-13.fc39.noarch 130/154 Installing : rpmautospec-rpm-macros-0.7.3-1.fc39.noarch 131/154 Installing : rpm-build-libs-4.19.1.1-1.fc39.x86_64 132/154 Installing : libsemanage-3.5-4.fc39.x86_64 133/154 Installing : shadow-utils-2:4.14.0-2.fc39.x86_64 134/154 Running scriptlet: libutempter-1.2.1-10.fc39.x86_64 135/154 Installing : libutempter-1.2.1-10.fc39.x86_64 135/154 Installing : patch-2.7.6-22.fc39.x86_64 136/154 Installing : tar-2:1.35-2.fc39.x86_64 137/154 Installing : package-notes-srpm-macros-0.5-9.fc39.noarch 138/154 Installing : openblas-srpm-macros-2-14.fc39.noarch 139/154 Installing : ocaml-srpm-macros-8-2.fc39.noarch 140/154 Installing : kernel-srpm-macros-1.0-20.fc39.noarch 141/154 Installing : gnat-srpm-macros-6-3.fc39.noarch 142/154 Installing : ghc-srpm-macros-1.6.1-2.fc39.noarch 143/154 Installing : fpc-srpm-macros-1.3-8.fc39.noarch 144/154 Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 145/154 Installing : forge-srpm-macros-0.3.1-1.fc39.noarch 146/154 Installing : go-srpm-macros-3.5.0-1.fc39.noarch 147/154 Installing : python-srpm-macros-3.12-8.fc39.noarch 148/154 Installing : redhat-rpm-config-266-1.fc39.noarch 149/154 Installing : rpm-build-4.19.1.1-1.fc39.x86_64 150/154 Installing : pyproject-srpm-macros-1.16.0-1.fc39.noarch 151/154 Installing : util-linux-2.39.4-1.fc39.x86_64 152/154 Running scriptlet: util-linux-2.39.4-1.fc39.x86_64 152/154 Installing : which-2.21-40.fc39.x86_64 153/154 Installing : info-7.0.3-3.fc39.x86_64 154/154 Running scriptlet: filesystem-3.18-6.fc39.x86_64 154/154 Running scriptlet: ca-certificates-2024.2.69_v8.0.401-1.0.fc39.noar 154/154 Running scriptlet: authselect-libs-1.4.3-1.fc39.x86_64 154/154 Running scriptlet: rpm-4.19.1.1-1.fc39.x86_64 154/154 Running scriptlet: info-7.0.3-3.fc39.x86_64 154/154 Installed products updated. Installed: alternatives-1.26-1.fc39.x86_64 ansible-srpm-macros-1-12.fc39.noarch audit-libs-3.1.5-1.fc39.x86_64 authselect-1.4.3-1.fc39.x86_64 authselect-libs-1.4.3-1.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.26-1.fc39.x86_64 binutils-2.40-14.fc39.x86_64 binutils-gold-2.40-14.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2024.2.69_v8.0.401-1.0.fc39.noarch coreutils-9.3-7.fc39.x86_64 coreutils-common-9.3-7.fc39.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231204-1.git1e3a2e4.fc39.noarch curl-8.2.1-5.fc39.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-12.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.192-4.fc39.x86_64 elfutils-debuginfod-client-0.192-4.fc39.x86_64 elfutils-default-yama-scope-0.192-4.fc39.noarch elfutils-libelf-0.192-4.fc39.x86_64 elfutils-libs-0.192-4.fc39.x86_64 fedora-gpg-keys-39-2.noarch fedora-release-39-36.noarch fedora-release-common-39-36.noarch fedora-release-identity-basic-39-36.noarch fedora-repos-39-2.noarch file-5.44-5.fc39.x86_64 file-libs-5.44-5.fc39.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-1:4.9.0-6.fc39.x86_64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.3.1-1.fc39.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-15.1-1.fc39.x86_64 gdbm-libs-1:1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38-19.fc39.x86_64 glibc-common-2.38-19.fc39.x86_64 glibc-gconv-extra-2.38-19.fc39.x86_64 glibc-minimal-langpack-2.38-19.fc39.x86_64 gmp-1:6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.5.0-1.fc39.noarch grep-3.11-3.fc39.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 json-c-0.17-1.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc39.x86_64 krb5-libs-1.21.3-2.fc39.x86_64 libacl-2.3.1-9.fc39.x86_64 libarchive-3.7.1-3.fc39.x86_64 libattr-2.5.1-8.fc39.x86_64 libblkid-2.39.4-1.fc39.x86_64 libbrotli-1.1.0-1.fc39.x86_64 libcap-2.48-9.fc39.x86_64 libcap-ng-0.8.3-8.fc39.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.2.1-5.fc39.x86_64 libdb-5.3.28-56.fc39.x86_64 libeconf-0.5.2-2.fc39.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.4-1.fc39.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.3.1-3.fc39.x86_64 libgomp-13.3.1-3.fc39.x86_64 libidn2-2.3.7-1.fc39.x86_64 libmount-2.39.4-1.fc39.x86_64 libnghttp2-1.55.1-5.fc39.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.4-1.fc39.x86_64 libssh-0.10.6-2.fc39.x86_64 libssh-config-0.10.6-2.fc39.noarch libstdc++-13.3.1-3.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.6-0.fc39.x86_64 libtool-ltdl-2.4.7-7.fc39.x86_64 libunistring-1.1-5.fc39.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.4-1.fc39.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 libzstd-1.5.6-1.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-13.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc39.1.noarch ncurses-libs-6.4-7.20230520.fc39.1.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.7-1.fc39.x86_64 openssl-libs-1:3.1.4-4.fc39.x86_64 p11-kit-0.25.5-1.fc39.x86_64 p11-kit-trust-0.25.5-1.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-3.fc39.x86_64 pam-libs-1.5.3-3.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20240107-1.fc39.noarch pyproject-srpm-macros-1.16.0-1.fc39.noarch python-srpm-macros-3.12-8.fc39.noarch qt5-srpm-macros-5.15.14-2.fc39.noarch qt6-srpm-macros-6.6.2-1.fc39.noarch readline-8.2-6.fc39.x86_64 redhat-rpm-config-266-1.fc39.noarch rpm-4.19.1.1-1.fc39.x86_64 rpm-build-4.19.1.1-1.fc39.x86_64 rpm-build-libs-4.19.1.1-1.fc39.x86_64 rpm-libs-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.7.0-1.fc39.x86_64 rpmautospec-rpm-macros-0.7.3-1.fc39.noarch rust-srpm-macros-26.3-1.fc39.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-2:4.14.0-2.fc39.x86_64 sqlite-libs-3.42.0-7.fc39.x86_64 systemd-libs-254.20-1.fc39.x86_64 tar-2:1.35-2.fc39.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.4-1.fc39.x86_64 util-linux-core-2.39.4-1.fc39.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-4.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-39.fc39.x86_64 zlib-1.2.13-4.fc39.x86_64 zstd-1.5.6-1.fc39.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-1.fc39.x86_64 ansible-srpm-macros-1-12.fc39.noarch audit-libs-3.1.5-1.fc39.x86_64 authselect-1.4.3-1.fc39.x86_64 authselect-libs-1.4.3-1.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.26-1.fc39.x86_64 binutils-2.40-14.fc39.x86_64 binutils-gold-2.40-14.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2024.2.69_v8.0.401-1.0.fc39.noarch coreutils-9.3-7.fc39.x86_64 coreutils-common-9.3-7.fc39.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231204-1.git1e3a2e4.fc39.noarch curl-8.2.1-5.fc39.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-12.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.192-4.fc39.x86_64 elfutils-debuginfod-client-0.192-4.fc39.x86_64 elfutils-default-yama-scope-0.192-4.fc39.noarch elfutils-libelf-0.192-4.fc39.x86_64 elfutils-libs-0.192-4.fc39.x86_64 fedora-gpg-keys-39-2.noarch fedora-release-39-36.noarch fedora-release-common-39-36.noarch fedora-release-identity-basic-39-36.noarch fedora-repos-39-2.noarch file-5.44-5.fc39.x86_64 file-libs-5.44-5.fc39.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-4.9.0-6.fc39.x86_64 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.3.1-1.fc39.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-15.1-1.fc39.x86_64 gdbm-libs-1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38-19.fc39.x86_64 glibc-common-2.38-19.fc39.x86_64 glibc-gconv-extra-2.38-19.fc39.x86_64 glibc-minimal-langpack-2.38-19.fc39.x86_64 gmp-6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.5.0-1.fc39.noarch gpg-pubkey-18b8e74c-62f2920f grep-3.11-3.fc39.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 json-c-0.17-1.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc39.x86_64 krb5-libs-1.21.3-2.fc39.x86_64 libacl-2.3.1-9.fc39.x86_64 libarchive-3.7.1-3.fc39.x86_64 libattr-2.5.1-8.fc39.x86_64 libblkid-2.39.4-1.fc39.x86_64 libbrotli-1.1.0-1.fc39.x86_64 libcap-2.48-9.fc39.x86_64 libcap-ng-0.8.3-8.fc39.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.2.1-5.fc39.x86_64 libdb-5.3.28-56.fc39.x86_64 libeconf-0.5.2-2.fc39.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.4-1.fc39.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.3.1-3.fc39.x86_64 libgomp-13.3.1-3.fc39.x86_64 libidn2-2.3.7-1.fc39.x86_64 libmount-2.39.4-1.fc39.x86_64 libnghttp2-1.55.1-5.fc39.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.4-1.fc39.x86_64 libssh-0.10.6-2.fc39.x86_64 libssh-config-0.10.6-2.fc39.noarch libstdc++-13.3.1-3.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.6-0.fc39.x86_64 libtool-ltdl-2.4.7-7.fc39.x86_64 libunistring-1.1-5.fc39.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.4-1.fc39.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 libzstd-1.5.6-1.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-13.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc39.1.noarch ncurses-libs-6.4-7.20230520.fc39.1.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.7-1.fc39.x86_64 openssl-libs-3.1.4-4.fc39.x86_64 p11-kit-0.25.5-1.fc39.x86_64 p11-kit-trust-0.25.5-1.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-3.fc39.x86_64 pam-libs-1.5.3-3.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20240107-1.fc39.noarch pyproject-srpm-macros-1.16.0-1.fc39.noarch python-srpm-macros-3.12-8.fc39.noarch qt5-srpm-macros-5.15.14-2.fc39.noarch qt6-srpm-macros-6.6.2-1.fc39.noarch readline-8.2-6.fc39.x86_64 redhat-rpm-config-266-1.fc39.noarch rpm-4.19.1.1-1.fc39.x86_64 rpm-build-4.19.1.1-1.fc39.x86_64 rpm-build-libs-4.19.1.1-1.fc39.x86_64 rpm-libs-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.7.0-1.fc39.x86_64 rpmautospec-rpm-macros-0.7.3-1.fc39.noarch rust-srpm-macros-26.3-1.fc39.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-4.14.0-2.fc39.x86_64 sqlite-libs-3.42.0-7.fc39.x86_64 systemd-libs-254.20-1.fc39.x86_64 tar-1.35-2.fc39.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.4-1.fc39.x86_64 util-linux-core-2.39.4-1.fc39.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-4.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-39.fc39.x86_64 zlib-1.2.13-4.fc39.x86_64 zstd-1.5.6-1.fc39.x86_64 Start: buildsrpm Start: rpmbuild -bs warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-PhenotypeR-0.1.0-1.fc39.copr8353650.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1733536178.680108/root/var/log/dnf.log /var/lib/mock/fedora-39-x86_64-1733536178.680108/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1733536178.680108/root/var/log/dnf.rpm.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-s3fylofy/R-CRAN-PhenotypeR/R-CRAN-PhenotypeR.spec) Config(child) 0 minutes 48 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-PhenotypeR-0.1.0-1.fc39.copr8353650.src.rpm) Config(fedora-39-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1733536178.680108/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 python3-dnf-4.22.0-1.fc41.noarch python3-dnf-plugins-core-4.10.0-1.fc41.noarch dnf5-5.2.7.0-1.fc41.x86_64 dnf5-plugins-5.2.7.0-1.fc41.x86_64 Finish: chroot init Start: build phase for R-CRAN-PhenotypeR-0.1.0-1.fc39.copr8353650.src.rpm Start: build setup for R-CRAN-PhenotypeR-0.1.0-1.fc39.copr8353650.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-PhenotypeR-0.1.0-1.fc39.copr8353650.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 43 kB/s | 1.5 kB 00:00 Copr repository 44 MB/s | 12 MB 00:00 fedora 1.4 MB/s | 33 kB 00:00 updates 1.2 MB/s | 29 kB 00:00 Dependencies resolved. =========================================================================================== Package Arch Version Repo Size =========================================================================================== Installing: R-CRAN-CodelistGenerator noarch 3.3.1-1.fc39.copr8317477 copr_base 869 k R-CRAN-CohortCharacteristics noarch 0.4.0-1.fc39.copr8317478 copr_base 1.9 M R-CRAN-CohortConstructor noarch 0.3.3-1.fc39.copr8317479 copr_base 1.2 M R-CRAN-IncidencePrevalence noarch 0.9.0-1.fc39.copr8320987 copr_base 695 k R-CRAN-OmopSketch noarch 0.1.2-1.fc39.copr8249513 copr_base 986 k R-CRAN-cli x86_64 3.6.3-1.fc39.copr7649835 copr_base 1.3 M R-CRAN-dplyr x86_64 1.1.4-1.fc39.copr6691319 copr_base 1.5 M R-CRAN-magrittr x86_64 2.0.3-1.fc39.copr6279321 copr_base 222 k R-CRAN-omopgenerics noarch 0.4.1-1.fc39.copr8347026 copr_base 620 k R-CRAN-purrr x86_64 1.0.2-1.fc39.copr6286812 copr_base 546 k R-CRAN-rlang x86_64 1.1.4-1.fc39.copr7531082 copr_base 1.6 M R-CRAN-usethis noarch 3.1.0-1.fc39.copr8317509 copr_base 952 k R-CRAN-vctrs x86_64 0.6.5-1.fc39.copr6715464 copr_base 1.3 M R-devel x86_64 4.3.3-2.fc39 updates 10 k Installing dependencies: R-CRAN-CDMConnector noarch 1.6.1-1.fc39.copr8328795 copr_base 1.3 M R-CRAN-DBI noarch 1.2.3-1.fc39.copr7522874 copr_base 885 k R-CRAN-MASS x86_64 7.3.60.0.1-1.fc39.copr6895092 copr_base 1.2 M R-CRAN-Matrix x86_64 1.6.5-1.fc39.copr6886765 copr_base 4.1 M R-CRAN-PatientProfiles noarch 1.2.2-1.fc39.copr8324825 copr_base 713 k R-CRAN-R6 noarch 2.5.1-1.fc39.copr6279323 copr_base 96 k R-CRAN-RColorBrewer noarch 1.1.3-1.fc39.copr6279333 copr_base 65 k R-CRAN-RJSONIO x86_64 1.3.1.9-1.fc39.copr6700981 copr_base 949 k R-CRAN-Rcpp x86_64 1.0.13.1-1.fc39.copr8204071 copr_base 2.0 M R-CRAN-V8 x86_64 6.0.0-1.fc39.copr8132151 copr_base 408 k R-CRAN-askpass x86_64 1.2.1-1.fc39.copr8109609 copr_base 35 k R-CRAN-backports x86_64 1.5.0-1.fc39.copr7483453 copr_base 140 k R-CRAN-base64enc x86_64 0.1.3-3.fc39.copr6279336 copr_base 40 k R-CRAN-bigD noarch 0.3.0-1.fc39.copr8232783 copr_base 1.1 M R-CRAN-bit x86_64 4.5.0.1-1.fc39.copr8339980 copr_base 1.1 M R-CRAN-bit64 x86_64 4.5.2-1.fc39.copr8059694 copr_base 544 k R-CRAN-bitops x86_64 1.0.9-1.fc39.copr8106788 copr_base 41 k R-CRAN-blob noarch 1.2.4-1.fc39.copr6286822 copr_base 58 k R-CRAN-bslib noarch 0.8.0-1.fc39.copr7803003 copr_base 4.6 M R-CRAN-cachem x86_64 1.1.0-1.fc39.copr7452047 copr_base 82 k R-CRAN-checkmate x86_64 2.3.2-1.fc39.copr7803006 copr_base 743 k R-CRAN-clipr noarch 0.8.0-1.fc39.copr6279344 copr_base 63 k R-CRAN-clock x86_64 0.7.1-1.fc39.copr7752146 copr_base 1.7 M R-CRAN-colorspace x86_64 2.1.1-1.fc39.copr7795131 copr_base 2.5 M R-CRAN-commonmark x86_64 1.9.2-1.fc39.copr8109546 copr_base 140 k R-CRAN-crayon noarch 1.5.3-1.fc39.copr7633037 copr_base 181 k R-CRAN-credentials noarch 2.0.2-1.fc39.copr8109616 copr_base 229 k R-CRAN-curl x86_64 6.0.1-1.fc39.copr8264073 copr_base 472 k R-CRAN-data.table x86_64 1.16.4-1.fc39.copr8353644 copr_base 2.2 M R-CRAN-dbplyr noarch 2.5.0-1.fc39.copr7307309 copr_base 1.2 M R-CRAN-desc noarch 1.4.3-1.fc39.copr6739847 copr_base 354 k R-CRAN-diffobj x86_64 0.3.5-1.fc39.copr6282940 copr_base 998 k R-CRAN-digest x86_64 0.6.37-1.fc39.copr7936834 copr_base 229 k R-CRAN-duckdb x86_64 1.1.3-1.fc39.copr8300065 copr_base 11 M R-CRAN-evaluate noarch 1.0.1-1.fc39.copr8128148 copr_base 116 k R-CRAN-fansi x86_64 1.0.6-1.fc39.copr6735917 copr_base 339 k R-CRAN-farver x86_64 2.1.2-1.fc39.copr7442181 copr_base 1.3 M R-CRAN-fastmap x86_64 1.2.0-1.fc39.copr7447859 copr_base 79 k R-CRAN-flextable noarch 0.9.7-1.fc39.copr8181592 copr_base 2.2 M R-CRAN-fontBitstreamVera noarch 0.1.1-3.fc39.copr6279487 copr_base 559 k R-CRAN-fontLiberation noarch 0.1.0-3.fc39.copr6279488 copr_base 3.6 M R-CRAN-fontawesome noarch 0.5.3-1.fc39.copr8272230 copr_base 1.3 M R-CRAN-fontquiver noarch 0.2.1-3.fc39.copr6283387 copr_base 2.1 M R-CRAN-fs x86_64 1.6.5-1.fc39.copr8192618 copr_base 326 k R-CRAN-gdtools x86_64 0.4.1-1.fc39.copr8210712 copr_base 207 k R-CRAN-generics noarch 0.1.3-1.fc39.copr6279393 copr_base 100 k R-CRAN-gert x86_64 2.1.4-1.fc39.copr8136495 copr_base 272 k R-CRAN-ggplot2 noarch 3.5.1-1.fc39.copr7342639 copr_base 4.8 M R-CRAN-gh noarch 1.4.1-1.fc39.copr7307832 copr_base 132 k R-CRAN-gitcreds noarch 0.1.2-1.fc39.copr8099665 copr_base 102 k R-CRAN-glue x86_64 1.8.0-1.fc39.copr8094211 copr_base 172 k R-CRAN-gt noarch 0.11.1-1.fc39.copr8109611 copr_base 5.9 M R-CRAN-gtable noarch 0.3.6-1.fc39.copr8178682 copr_base 236 k R-CRAN-highr noarch 0.11-1.fc39.copr7494448 copr_base 49 k R-CRAN-hms noarch 1.1.3-1.fc39.copr6286819 copr_base 113 k R-CRAN-htmltools x86_64 0.5.8.1-1.fc39.copr7306783 copr_base 386 k R-CRAN-htmlwidgets noarch 1.6.4-1.fc39.copr6730509 copr_base 426 k R-CRAN-httr2 noarch 1.0.7-1.fc39.copr8317489 copr_base 685 k R-CRAN-ini noarch 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noarch 0.6.7-1.fc39.copr8125933 copr_base 1.7 M R-CRAN-omock noarch 0.3.1-1.fc39.copr8145413 copr_base 1.0 M R-CRAN-openssl x86_64 2.2.2-1.fc39.copr8046230 copr_base 657 k R-CRAN-pillar noarch 1.9.0-1.fc39.copr6286818 copr_base 626 k R-CRAN-pkgconfig noarch 2.0.3-3.fc39.copr6279322 copr_base 30 k R-CRAN-ragg x86_64 1.3.3-1.fc39.copr8010592 copr_base 491 k R-CRAN-rappdirs x86_64 0.3.3-1.fc39.copr8099955 copr_base 60 k R-CRAN-reactR noarch 0.6.1-1.fc39.copr8021318 copr_base 491 k R-CRAN-reactable noarch 0.4.4-1.fc39.copr6293990 copr_base 785 k R-CRAN-readr x86_64 2.1.5-1.fc39.copr6880950 copr_base 781 k R-CRAN-rmarkdown noarch 2.29-1.fc39.copr8210728 copr_base 2.0 M R-CRAN-rprojroot noarch 2.0.4-1.fc39.copr6601156 copr_base 120 k R-CRAN-rstudioapi noarch 0.17.1-1.fc39.copr8168060 copr_base 353 k R-CRAN-sass x86_64 0.4.9-1.fc39.copr7307485 copr_base 2.1 M R-CRAN-scales noarch 1.3.0-1.fc39.copr6704012 copr_base 707 k R-CRAN-snakecase noarch 0.11.1-1.fc39.copr6347986 copr_base 174 k 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x86_64 1.1.0-1.fc39 fedora 34 k bzip2-devel x86_64 1.0.8-16.fc39 fedora 214 k cairo x86_64 1.18.0-1.fc39 fedora 710 k cmake-filesystem x86_64 3.30.5-1.fc39 updates 17 k copy-jdk-configs noarch 4.1-3.fc39 fedora 28 k cpp x86_64 13.3.1-3.fc39 updates 11 M crypto-policies-scripts noarch 20231204-1.git1e3a2e4.fc39 updates 117 k cups-libs x86_64 1:2.4.11-1.fc39 updates 268 k dbus-libs x86_64 1:1.14.10-1.fc39 fedora 156 k default-fonts-core-sans noarch 4.0-9.fc39 fedora 32 k desktop-file-utils x86_64 0.26-9.fc39 fedora 72 k emacs-filesystem noarch 1:29.4-2.fc39 updates 7.3 k expat x86_64 2.6.3-1.fc39 updates 114 k flexiblas x86_64 3.4.4-1.fc39 updates 25 k flexiblas-devel x86_64 3.4.4-1.fc39 updates 121 k flexiblas-netlib x86_64 3.4.4-1.fc39 updates 3.1 M flexiblas-netlib64 x86_64 3.4.4-1.fc39 updates 3.0 M flexiblas-openblas-openmp x86_64 3.4.4-1.fc39 updates 17 k flexiblas-openblas-openmp64 x86_64 3.4.4-1.fc39 updates 17 k fontconfig x86_64 2.14.2-6.fc39 updates 296 k fontconfig-devel 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fedora 95 k graphite2-devel x86_64 1.3.14-12.fc39 fedora 20 k groff-base x86_64 1.23.0-3.fc39 updates 1.1 M guile22 x86_64 2.2.7-9.fc39 fedora 6.5 M harfbuzz x86_64 8.2.1-2.fc39 fedora 975 k harfbuzz-devel x86_64 8.2.1-2.fc39 fedora 450 k harfbuzz-icu x86_64 8.2.1-2.fc39 fedora 17 k http-parser x86_64 2.9.4-9.fc39 fedora 36 k java-17-openjdk x86_64 1:17.0.13.0.11-3.fc39 updates 420 k java-17-openjdk-devel x86_64 1:17.0.13.0.11-3.fc39 updates 4.7 M java-17-openjdk-headless x86_64 1:17.0.13.0.11-3.fc39 updates 44 M javapackages-filesystem noarch 6.1.0-10.fc39 fedora 12 k jbigkit-libs x86_64 2.1-26.fc39 fedora 53 k kernel-headers x86_64 6.11.3-100.fc39 updates 1.6 M libICE x86_64 1.0.10-11.fc39 fedora 70 k libRmath x86_64 4.3.3-2.fc39 updates 121 k libRmath-devel x86_64 4.3.3-2.fc39 updates 16 k libSM x86_64 1.2.3-13.fc39 fedora 41 k libX11 x86_64 1.8.9-1.fc39 updates 650 k libX11-common noarch 1.8.9-1.fc39 updates 176 k libX11-devel x86_64 1.8.9-1.fc39 updates 1.0 M libX11-xcb x86_64 1.8.9-1.fc39 updates 12 k libXau x86_64 1.0.11-3.fc39 fedora 31 k libXau-devel x86_64 1.0.11-3.fc39 fedora 14 k libXcomposite x86_64 0.4.5-10.fc39 fedora 23 k libXext x86_64 1.3.5-3.fc39 fedora 39 k libXft x86_64 2.3.8-3.fc39 fedora 72 k libXft-devel x86_64 2.3.8-3.fc39 fedora 50 k libXi x86_64 1.8.1-2.fc39 fedora 40 k libXmu x86_64 1.1.4-3.fc39 fedora 76 k libXrender x86_64 0.9.11-3.fc39 fedora 27 k libXrender-devel x86_64 0.9.11-3.fc39 fedora 19 k libXt x86_64 1.2.1-5.fc39 fedora 178 k libXtst x86_64 1.2.4-3.fc39 fedora 20 k libb2 x86_64 0.98.1-9.fc39 fedora 25 k libblkid-devel x86_64 2.39.4-1.fc39 updates 18 k libdatrie x86_64 0.2.13-7.fc39 fedora 32 k libffi-devel x86_64 3.4.4-4.fc39 fedora 29 k libfontenc x86_64 1.1.6-3.fc39 fedora 32 k libgfortran x86_64 13.3.1-3.fc39 updates 909 k libgit2 x86_64 1.7.2-1.fc39 updates 538 k libicu x86_64 73.2-2.fc39 fedora 11 M libicu-devel x86_64 73.2-2.fc39 fedora 924 k libjpeg-turbo x86_64 2.1.4-3.fc39 fedora 183 k liblerc x86_64 4.0.0-4.fc39 fedora 201 k libmount-devel x86_64 2.39.4-1.fc39 updates 18 k libmpc x86_64 1.3.1-3.fc39 fedora 70 k libpng x86_64 2:1.6.37-15.fc39 fedora 119 k libpng-devel x86_64 2:1.6.37-15.fc39 fedora 291 k libquadmath x86_64 13.3.1-3.fc39 updates 205 k libquadmath-devel x86_64 13.3.1-3.fc39 updates 47 k libselinux-devel x86_64 3.5-5.fc39 fedora 151 k libsepol-devel x86_64 3.5-2.fc39 fedora 49 k libssh2 x86_64 1.11.0-2.fc39 fedora 132 k libstdc++-devel x86_64 13.3.1-3.fc39 updates 2.6 M libthai x86_64 0.1.29-6.fc39 fedora 213 k libtiff x86_64 4.4.0-10.fc39 updates 200 k libtirpc-devel x86_64 1.3.6-0.fc39 updates 125 k libuv x86_64 1:1.49.2-1.fc39 updates 258 k libwebp x86_64 1.3.2-2.fc39 fedora 284 k libxcb x86_64 1.13.1-12.fc39 fedora 233 k libxcb-devel x86_64 1.13.1-12.fc39 fedora 1.4 M libxcrypt-devel x86_64 4.4.36-2.fc39 fedora 30 k libxml2-devel x86_64 2.10.4-3.fc39 fedora 527 k lksctp-tools x86_64 1.0.20-1.fc39 updates 97 k lua x86_64 5.4.6-3.fc39 fedora 191 k lua-posix x86_64 36.2.1-3.fc39 fedora 143 k make x86_64 1:4.4.1-2.fc39 fedora 589 k mkfontscale x86_64 1.2.2-4.fc39 fedora 32 k mpdecimal x86_64 2.5.1-7.fc39 fedora 89 k ncurses x86_64 6.4-7.20230520.fc39.1 updates 416 k nettle x86_64 3.9.1-2.fc39 fedora 425 k nodejs22-libs x86_64 1:22.11.0-1.fc39 updates 19 M nspr x86_64 4.35.0-24.fc39 updates 137 k nss x86_64 3.105.0-1.fc39 updates 708 k nss-softokn x86_64 3.105.0-1.fc39 updates 422 k nss-softokn-freebl x86_64 3.105.0-1.fc39 updates 324 k nss-sysinit x86_64 3.105.0-1.fc39 updates 18 k nss-util x86_64 3.105.0-1.fc39 updates 88 k openblas x86_64 0.3.21-6.fc39 fedora 35 k openblas-openmp x86_64 0.3.21-6.fc39 fedora 4.9 M openblas-openmp64 x86_64 0.3.21-6.fc39 fedora 4.8 M pango x86_64 1.51.0-1.fc39 fedora 343 k pcre2-devel x86_64 10.42-1.fc39.2 fedora 505 k pcre2-utf16 x86_64 10.42-1.fc39.2 fedora 212 k pcre2-utf32 x86_64 10.42-1.fc39.2 fedora 200 k perl-AutoLoader noarch 5.74-502.fc39 updates 21 k perl-B x86_64 1.88-502.fc39 updates 177 k perl-Carp noarch 1.54-500.fc39 fedora 29 k perl-Class-Struct noarch 0.68-502.fc39 updates 22 k perl-Data-Dumper x86_64 2.188-501.fc39 fedora 56 k perl-Digest noarch 1.20-500.fc39 fedora 25 k perl-Digest-MD5 x86_64 2.58-500.fc39 fedora 35 k perl-DynaLoader x86_64 1.54-502.fc39 updates 26 k perl-Encode x86_64 4:3.19-500.fc39 fedora 1.7 M perl-Errno x86_64 1.37-502.fc39 updates 15 k perl-Exporter noarch 5.77-500.fc39 fedora 31 k perl-Fcntl x86_64 1.15-502.fc39 updates 21 k perl-File-Basename noarch 2.86-502.fc39 updates 17 k perl-File-Path noarch 2.18-500.fc39 fedora 35 k perl-File-Temp noarch 1:0.231.100-500.fc39 fedora 58 k perl-File-stat noarch 1.13-502.fc39 updates 17 k perl-FileHandle noarch 2.05-502.fc39 updates 16 k perl-Getopt-Long noarch 1:2.54-500.fc39 fedora 60 k perl-Getopt-Std noarch 1.13-502.fc39 updates 16 k perl-HTTP-Tiny noarch 0.088-3.fc39 fedora 56 k perl-IO x86_64 1.52-502.fc39 updates 82 k perl-IO-Socket-IP noarch 0.42-1.fc39 fedora 42 k perl-IO-Socket-SSL noarch 2.083-3.fc39 fedora 225 k perl-IPC-Open3 noarch 1.22-502.fc39 updates 22 k perl-MIME-Base64 x86_64 3.16-500.fc39 fedora 29 k perl-Mozilla-CA noarch 20230801-1.fc39 fedora 13 k perl-Net-SSLeay x86_64 1.92-10.fc39 fedora 360 k perl-POSIX x86_64 2.13-502.fc39 updates 97 k perl-PathTools x86_64 3.89-500.fc39 fedora 87 k perl-Pod-Escapes noarch 1:1.07-500.fc39 fedora 20 k perl-Pod-Perldoc noarch 3.28.01-501.fc39 fedora 86 k perl-Pod-Simple noarch 1:3.45-4.fc39 fedora 218 k perl-Pod-Usage noarch 4:2.03-500.fc39 fedora 39 k perl-Scalar-List-Utils x86_64 5:1.63-500.fc39 fedora 72 k perl-SelectSaver noarch 1.02-502.fc39 updates 12 k perl-Socket x86_64 4:2.037-3.fc39 fedora 55 k perl-Storable x86_64 1:3.32-500.fc39 fedora 99 k perl-Symbol noarch 1.09-502.fc39 updates 14 k perl-Term-ANSIColor noarch 5.01-501.fc39 fedora 47 k perl-Term-Cap noarch 1.18-500.fc39 fedora 22 k perl-Text-ParseWords noarch 3.31-500.fc39 fedora 16 k perl-Text-Tabs+Wrap noarch 2023.0511-3.fc39 fedora 22 k perl-Time-Local noarch 2:1.350-3.fc39 fedora 34 k perl-URI noarch 5.21-1.fc39 fedora 125 k perl-base noarch 2.27-502.fc39 updates 16 k perl-constant noarch 1.33-501.fc39 fedora 22 k perl-if noarch 0.61.000-502.fc39 updates 14 k perl-interpreter x86_64 4:5.38.2-502.fc39 updates 72 k perl-libnet noarch 3.15-501.fc39 fedora 129 k perl-libs x86_64 4:5.38.2-502.fc39 updates 2.4 M perl-locale noarch 1.10-502.fc39 updates 14 k perl-mro x86_64 1.28-502.fc39 updates 29 k perl-overload noarch 1.37-502.fc39 updates 46 k perl-overloading noarch 0.02-502.fc39 updates 13 k perl-parent noarch 1:0.241-500.fc39 fedora 14 k perl-podlators noarch 1:5.01-500.fc39 fedora 125 k perl-vars noarch 1.05-502.fc39 updates 13 k pixman x86_64 0.42.2-2.fc39 fedora 288 k python-pip-wheel noarch 23.2.1-2.fc39 updates 1.5 M python3 x86_64 3.12.7-1.fc39 updates 28 k python3-libs x86_64 3.12.7-1.fc39 updates 9.2 M python3-setuptools noarch 67.7.2-8.fc39 updates 1.5 M sysprof-capture-devel x86_64 45.1-1.fc39 updates 59 k tcl x86_64 1:8.6.12-5.fc39 fedora 1.1 M tcl-devel x86_64 1:8.6.12-5.fc39 fedora 169 k tk x86_64 1:8.6.12-5.fc39 fedora 1.6 M tk-devel x86_64 1:8.6.12-5.fc39 fedora 537 k tre x86_64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 43 k tre-common noarch 0.8.0-41.20140228gitc2f5d13.fc39 fedora 31 k tre-devel x86_64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 12 k ttmkfdir x86_64 3.0.9-69.fc39 fedora 56 k tzdata noarch 2024a-2.fc39 updates 715 k tzdata-java noarch 2024a-2.fc39 updates 208 k xclip x86_64 0.13-20.git11cba61.fc39 fedora 37 k xdg-utils noarch 1.1.3-15.fc39 fedora 77 k xml-common noarch 0.6.3-61.fc39 fedora 31 k xorg-x11-fonts-Type1 noarch 7.5-36.fc39 fedora 504 k xorg-x11-proto-devel noarch 2023.2-2.fc39 fedora 298 k xz-devel x86_64 5.4.4-1.fc39 fedora 66 k zlib-devel x86_64 1.2.13-4.fc39 fedora 45 k Transaction Summary =========================================================================================== Install 346 Packages Total download size: 409 M Installed size: 1.2 G Downloading Packages: (1/346): R-CRAN-CodelistGenerator-3.3.1-1.fc39. 5.3 MB/s | 869 kB 00:00 (2/346): R-CRAN-CDMConnector-1.6.1-1.fc39.copr8 7.2 MB/s | 1.3 MB 00:00 (3/346): R-CRAN-CohortCharacteristics-0.4.0-1.f 9.9 MB/s | 1.9 MB 00:00 (4/346): R-CRAN-DBI-1.2.3-1.fc39.copr7522874.no 11 MB/s | 885 kB 00:00 (5/346): R-CRAN-IncidencePrevalence-0.9.0-1.fc3 9.6 MB/s | 695 kB 00:00 (6/346): R-CRAN-CohortConstructor-0.3.3-1.fc39. 10 MB/s | 1.2 MB 00:00 (7/346): R-CRAN-MASS-7.3.60.0.1-1.fc39.copr6895 29 MB/s | 1.2 MB 00:00 (8/346): R-CRAN-Matrix-1.6.5-1.fc39.copr6886765 43 MB/s | 4.1 MB 00:00 (9/346): R-CRAN-PatientProfiles-1.2.2-1.fc39.co 9.4 MB/s | 713 kB 00:00 (10/346): R-CRAN-OmopSketch-0.1.2-1.fc39.copr82 9.4 MB/s | 986 kB 00:00 (11/346): R-CRAN-R6-2.5.1-1.fc39.copr6279323.no 3.9 MB/s | 96 kB 00:00 (12/346): R-CRAN-RColorBrewer-1.1.3-1.fc39.copr 3.5 MB/s | 65 kB 00:00 (13/346): R-CRAN-Rcpp-1.0.13.1-1.fc39.copr82040 50 MB/s | 2.0 MB 00:00 (14/346): R-CRAN-V8-6.0.0-1.fc39.copr8132151.x8 11 MB/s | 408 kB 00:00 (15/346): R-CRAN-backports-1.5.0-1.fc39.copr748 9.5 MB/s | 140 kB 00:00 (16/346): R-CRAN-RJSONIO-1.3.1.9-1.fc39.copr670 12 MB/s | 949 kB 00:00 (17/346): R-CRAN-askpass-1.2.1-1.fc39.copr81096 1.1 MB/s | 35 kB 00:00 (18/346): R-CRAN-base64enc-0.1.3-3.fc39.copr627 2.1 MB/s | 40 kB 00:00 (19/346): R-CRAN-bit-4.5.0.1-1.fc39.copr8339980 54 MB/s | 1.1 MB 00:00 (20/346): R-CRAN-bit64-4.5.2-1.fc39.copr8059694 28 MB/s | 544 kB 00:00 (21/346): R-CRAN-blob-1.2.4-1.fc39.copr6286822. 4.6 MB/s | 58 kB 00:00 (22/346): R-CRAN-bitops-1.0.9-1.fc39.copr810678 925 kB/s | 41 kB 00:00 (23/346): R-CRAN-bigD-0.3.0-1.fc39.copr8232783. 16 MB/s | 1.1 MB 00:00 (24/346): R-CRAN-cachem-1.1.0-1.fc39.copr745204 1.3 MB/s | 82 kB 00:00 (25/346): R-CRAN-checkmate-2.3.2-1.fc39.copr780 12 MB/s | 743 kB 00:00 (26/346): R-CRAN-bslib-0.8.0-1.fc39.copr7803003 47 MB/s | 4.6 MB 00:00 (27/346): R-CRAN-cli-3.6.3-1.fc39.copr7649835.x 16 MB/s | 1.3 MB 00:00 (28/346): R-CRAN-clipr-0.8.0-1.fc39.copr6279344 797 kB/s | 63 kB 00:00 (29/346): R-CRAN-clock-0.7.1-1.fc39.copr7752146 22 MB/s | 1.7 MB 00:00 (30/346): R-CRAN-commonmark-1.9.2-1.fc39.copr81 2.0 MB/s | 140 kB 00:00 (31/346): R-CRAN-colorspace-2.1.1-1.fc39.copr77 33 MB/s | 2.5 MB 00:00 (32/346): R-CRAN-crayon-1.5.3-1.fc39.copr763303 2.5 MB/s | 181 kB 00:00 (33/346): R-CRAN-credentials-2.0.2-1.fc39.copr8 6.4 MB/s | 229 kB 00:00 (34/346): R-CRAN-data.table-1.16.4-1.fc39.copr8 40 MB/s | 2.2 MB 00:00 (35/346): R-CRAN-curl-6.0.1-1.fc39.copr8264073. 5.6 MB/s | 472 kB 00:00 (36/346): R-CRAN-diffobj-0.3.5-1.fc39.copr62829 24 MB/s | 998 kB 00:00 (37/346): R-CRAN-desc-1.4.3-1.fc39.copr6739847. 4.4 MB/s | 354 kB 00:00 (38/346): R-CRAN-dbplyr-2.5.0-1.fc39.copr730730 11 MB/s | 1.2 MB 00:00 (39/346): R-CRAN-digest-0.6.37-1.fc39.copr79368 9.7 MB/s | 229 kB 00:00 (40/346): R-CRAN-evaluate-1.0.1-1.fc39.copr8128 10 MB/s | 116 kB 00:00 (41/346): R-CRAN-dplyr-1.1.4-1.fc39.copr6691319 31 MB/s | 1.5 MB 00:00 (42/346): R-CRAN-fansi-1.0.6-1.fc39.copr6735917 14 MB/s | 339 kB 00:00 (43/346): R-CRAN-fastmap-1.2.0-1.fc39.copr74478 630 kB/s | 79 kB 00:00 (44/346): R-CRAN-farver-2.1.2-1.fc39.copr744218 8.9 MB/s | 1.3 MB 00:00 (45/346): R-CRAN-duckdb-1.1.3-1.fc39.copr830006 53 MB/s | 11 MB 00:00 (46/346): R-CRAN-flextable-0.9.7-1.fc39.copr818 47 MB/s | 2.2 MB 00:00 (47/346): R-CRAN-fontBitstreamVera-0.1.1-3.fc39 18 MB/s | 559 kB 00:00 (48/346): R-CRAN-fontawesome-0.5.3-1.fc39.copr8 30 MB/s | 1.3 MB 00:00 (49/346): R-CRAN-fontLiberation-0.1.0-3.fc39.co 45 MB/s | 3.6 MB 00:00 (50/346): R-CRAN-fontquiver-0.2.1-3.fc39.copr62 29 MB/s | 2.1 MB 00:00 (51/346): R-CRAN-fs-1.6.5-1.fc39.copr8192618.x8 8.0 MB/s | 326 kB 00:00 (52/346): R-CRAN-gdtools-0.4.1-1.fc39.copr82107 14 MB/s | 207 kB 00:00 (53/346): R-CRAN-generics-0.1.3-1.fc39.copr6279 1.7 MB/s | 100 kB 00:00 (54/346): R-CRAN-ggplot2-3.5.1-1.fc39.copr73426 76 MB/s | 4.8 MB 00:00 (55/346): R-CRAN-gert-2.1.4-1.fc39.copr8136495. 4.0 MB/s | 272 kB 00:00 (56/346): R-CRAN-glue-1.8.0-1.fc39.copr8094211. 15 MB/s | 172 kB 00:00 (57/346): R-CRAN-gitcreds-0.1.2-1.fc39.copr8099 2.9 MB/s | 102 kB 00:00 (58/346): R-CRAN-gtable-0.3.6-1.fc39.copr817868 19 MB/s | 236 kB 00:00 (59/346): R-CRAN-highr-0.11-1.fc39.copr7494448. 4.2 MB/s | 49 kB 00:00 (60/346): R-CRAN-hms-1.1.3-1.fc39.copr6286819.n 9.0 MB/s | 113 kB 00:00 (61/346): R-CRAN-gh-1.4.1-1.fc39.copr7307832.no 1.4 MB/s | 132 kB 00:00 (62/346): R-CRAN-htmltools-0.5.8.1-1.fc39.copr7 28 MB/s | 386 kB 00:00 (63/346): R-CRAN-htmlwidgets-1.6.4-1.fc39.copr6 21 MB/s | 426 kB 00:00 (64/346): R-CRAN-httr2-1.0.7-1.fc39.copr8317489 7.0 MB/s | 685 kB 00:00 (65/346): R-CRAN-ini-0.3.1-3.fc39.copr6279402.n 243 kB/s | 24 kB 00:00 (66/346): R-CRAN-gt-0.11.1-1.fc39.copr8109611.n 29 MB/s | 5.9 MB 00:00 (67/346): R-CRAN-isoband-0.2.7-1.fc39.copr62804 32 MB/s | 1.6 MB 00:00 (68/346): R-CRAN-jquerylib-0.1.4-1.fc39.copr628 8.4 MB/s | 301 kB 00:00 (69/346): R-CRAN-knitr-1.49-1.fc39.copr8232802. 35 MB/s | 1.1 MB 00:00 (70/346): R-CRAN-jsonlite-1.8.9-1.fc39.copr8046 8.8 MB/s | 636 kB 00:00 (71/346): R-CRAN-labeling-0.4.3-1.fc39.copr6354 3.0 MB/s | 77 kB 00:00 (72/346): R-CRAN-juicyjuice-0.1.0-1.fc39.copr62 11 MB/s | 1.1 MB 00:00 (73/346): R-CRAN-lifecycle-1.0.4-1.fc39.copr661 2.8 MB/s | 130 kB 00:00 (74/346): R-CRAN-lattice-0.22.6-1.fc39.copr7307 29 MB/s | 1.4 MB 00:00 (75/346): R-CRAN-lubridate-1.9.3-1.fc39.copr652 42 MB/s | 1.1 MB 00:00 (76/346): R-CRAN-magrittr-2.0.3-1.fc39.copr6279 9.4 MB/s | 222 kB 00:00 (77/346): R-CRAN-markdown-1.13-1.fc39.copr75310 7.2 MB/s | 158 kB 00:00 (78/346): R-CRAN-memoise-2.0.1-1.fc39.copr62852 5.8 MB/s | 63 kB 00:00 (79/346): R-CRAN-mime-0.12-1.fc39.copr6279326.x 821 kB/s | 46 kB 00:00 (80/346): R-CRAN-mgcv-1.9.1-1.fc39.copr6775870. 31 MB/s | 3.3 MB 00:00 (81/346): R-CRAN-munsell-0.5.1-1.fc39.copr73067 2.5 MB/s | 251 kB 00:00 (82/346): R-CRAN-nlme-3.1.166-1.fc39.copr793697 39 MB/s | 2.4 MB 00:00 (83/346): R-CRAN-officer-0.6.7-1.fc39.copr81259 50 MB/s | 1.7 MB 00:00 (84/346): R-CRAN-omock-0.3.1-1.fc39.copr8145413 11 MB/s | 1.0 MB 00:00 (85/346): R-CRAN-pillar-1.9.0-1.fc39.copr628681 28 MB/s | 626 kB 00:00 (86/346): R-CRAN-omopgenerics-0.4.1-1.fc39.copr 4.6 MB/s | 620 kB 00:00 (87/346): R-CRAN-pkgconfig-2.0.3-3.fc39.copr627 886 kB/s | 30 kB 00:00 (88/346): R-CRAN-openssl-2.2.2-1.fc39.copr80462 5.3 MB/s | 657 kB 00:00 (89/346): R-CRAN-ragg-1.3.3-1.fc39.copr8010592. 27 MB/s | 491 kB 00:00 (90/346): R-CRAN-rappdirs-0.3.3-1.fc39.copr8099 4.9 MB/s | 60 kB 00:00 (91/346): R-CRAN-purrr-1.0.2-1.fc39.copr6286812 17 MB/s | 546 kB 00:00 (92/346): R-CRAN-readr-2.1.5-1.fc39.copr6880950 34 MB/s | 781 kB 00:00 (93/346): R-CRAN-rlang-1.1.4-1.fc39.copr7531082 31 MB/s | 1.6 MB 00:00 (94/346): R-CRAN-rmarkdown-2.29-1.fc39.copr8210 49 MB/s | 2.0 MB 00:00 (95/346): R-CRAN-reactable-0.4.4-1.fc39.copr629 5.8 MB/s | 785 kB 00:00 (96/346): R-CRAN-reactR-0.6.1-1.fc39.copr802131 3.5 MB/s | 491 kB 00:00 (97/346): R-CRAN-rstudioapi-0.17.1-1.fc39.copr8 27 MB/s | 353 kB 00:00 (98/346): R-CRAN-sass-0.4.9-1.fc39.copr7307485. 61 MB/s | 2.1 MB 00:00 (99/346): 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Running transaction test Transaction test succeeded. Running transaction Running scriptlet: copy-jdk-configs-4.1-3.fc39.noarch 1/1 Running scriptlet: java-17-openjdk-headless-1:17.0.13.0.11-3.fc39.x86_6 1/1 dnf 5 is printing lua only to stdout, but may skip first and last line The java-17-openjdk package is deprecated and may no longer receive updates. Since f42 install adoptium-temurin-java-repository and install temurin-17-jre https://fedoraproject.org/wiki/Changes/ThirdPartyLegacyJdks#adoptium-temurin-java-repository It currently lacks rpm-based debuginfo, fastdebugs and slowdebugs and headless subpackage. It also lacks offline javadocs and jdk duplicates jre dnf 5 is printing lua only to stdout, but may skip first and last line Running scriptlet: java-17-openjdk-devel-1:17.0.13.0.11-3.fc39.x86_64 1/1 dnf 5 is printing lua only to stdout, but may skip first and last line The java-17-openjdk-devel package is deprecated and may no longer receive updates. Since f42 install adoptium-temurin-java-repository and install temurin-17-jdk https://fedoraproject.org/wiki/Changes/ThirdPartyLegacyJdks#adoptium-temurin-java-repository It currently lacks rpm-based debuginfo, fastdebugs and slowdebugs and headless subpackage. 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Installing : R-CRAN-nlme-3.1.166-1.fc39.copr7936970.x86_64 234/346 Installing : R-CRAN-mgcv-1.9.1-1.fc39.copr6775870.x86_64 235/346 Installing : R-CRAN-fontawesome-0.5.3-1.fc39.copr8272230.noar 236/346 Installing : R-CRAN-reactR-0.6.1-1.fc39.copr8021318.noarch 237/346 Installing : R-CRAN-markdown-1.13-1.fc39.copr7531066.noarch 238/346 Installing : R-CRAN-memoise-2.0.1-1.fc39.copr6285223.noarch 239/346 Installing : R-CRAN-credentials-2.0.2-1.fc39.copr8109616.noar 240/346 Installing : R-CRAN-httr2-1.0.7-1.fc39.copr8317489.noarch 241/346 Installing : R-CRAN-textshaping-0.4.0-1.fc39.copr7488619.x86_ 242/346 Installing : R-CRAN-ragg-1.3.3-1.fc39.copr8010592.x86_64 243/346 Installing : R-CRAN-officer-0.6.7-1.fc39.copr8125933.noarch 244/346 Installing : R-CRAN-diffobj-0.3.5-1.fc39.copr6282940.x86_64 245/346 Installing : R-CRAN-waldo-0.6.1-1.fc39.copr8230116.noarch 246/346 Installing : R-CRAN-duckdb-1.1.3-1.fc39.copr8300065.x86_64 247/346 Installing : 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Installing : R-CRAN-colorspace-2.1.1-1.fc39.copr7795131.x86_6 263/346 Installing : R-CRAN-munsell-0.5.1-1.fc39.copr7306785.noarch 264/346 Installing : R-CRAN-data.table-1.16.4-1.fc39.copr8353644.x86_ 265/346 Installing : R-CRAN-farver-2.1.2-1.fc39.copr7442181.x86_64 266/346 Installing : R-CRAN-fontBitstreamVera-0.1.1-3.fc39.copr627948 267/346 Installing : R-CRAN-fontLiberation-0.1.0-3.fc39.copr6279488.n 268/346 Installing : R-CRAN-fontquiver-0.2.1-3.fc39.copr6283387.noarc 269/346 Installing : R-CRAN-gitcreds-0.1.2-1.fc39.copr8099665.noarch 270/346 Installing : R-CRAN-ini-0.3.1-3.fc39.copr6279402.noarch 271/346 Installing : R-CRAN-gh-1.4.1-1.fc39.copr7307832.noarch 272/346 Installing : R-CRAN-isoband-0.2.7-1.fc39.copr6280488.x86_64 273/346 Installing : R-CRAN-labeling-0.4.3-1.fc39.copr6354313.noarch 274/346 Installing : R-CRAN-mime-0.12-1.fc39.copr6279326.x86_64 275/346 Installing : R-CRAN-bslib-0.8.0-1.fc39.copr7803003.noarch 276/346 Installing : R-CRAN-rmarkdown-2.29-1.fc39.copr8210728.noarch 277/346 Installing : R-CRAN-htmlwidgets-1.6.4-1.fc39.copr6730509.noar 278/346 Installing : R-CRAN-reactable-0.4.4-1.fc39.copr6293990.noarch 279/346 Installing : R-CRAN-rprojroot-2.0.4-1.fc39.copr6601156.noarch 280/346 Installing : R-CRAN-timechange-0.3.0-1.fc39.copr8100479.x86_6 281/346 Installing : R-CRAN-lubridate-1.9.3-1.fc39.copr6523583.x86_64 282/346 Installing : R-CRAN-utf8-1.2.4-1.fc39.copr6555966.x86_64 283/346 Installing : R-CRAN-pillar-1.9.0-1.fc39.copr6286818.noarch 284/346 Installing : R-CRAN-tibble-3.2.1-1.fc39.copr6288598.x86_64 285/346 Installing : R-CRAN-dplyr-1.1.4-1.fc39.copr6691319.x86_64 286/346 Installing : R-CRAN-tidyr-1.3.1-1.fc39.copr6948918.x86_64 287/346 Installing : R-CRAN-dbplyr-2.5.0-1.fc39.copr7307309.noarch 288/346 Installing : R-CRAN-omopgenerics-0.4.1-1.fc39.copr8347026.noa 289/346 Installing : R-CRAN-visOmopResults-0.5.0-1.fc39.copr8309342.n 290/346 Installing : 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R-CRAN-juicyjuice-0.1.0-1.fc39.copr6286686.noarc 306/346 Installing : R-CRAN-gt-0.11.1-1.fc39.copr8109611.noarch 307/346 Installing : R-CRAN-gdtools-0.4.1-1.fc39.copr8210712.x86_64 308/346 Installing : R-CRAN-flextable-0.9.7-1.fc39.copr8181592.noarch 309/346 Installing : javapackages-filesystem-6.1.0-10.fc39.noarch 310/346 Installing : http-parser-2.9.4-9.fc39.x86_64 311/346 Installing : libgit2-1.7.2-1.fc39.x86_64 312/346 Installing : R-CRAN-gert-2.1.4-1.fc39.copr8136495.x86_64 313/346 Installing : gettext-envsubst-0.22-2.fc39.x86_64 314/346 Installing : gettext-runtime-0.22-2.fc39.x86_64 315/346 Installing : gettext-0.22-2.fc39.x86_64 316/346 Installing : gc-8.2.2-4.fc39.x86_64 317/346 Installing : guile22-2.2.7-9.fc39.x86_64 318/346 Installing : make-1:4.4.1-2.fc39.x86_64 319/346 Installing : gcc-13.3.1-3.fc39.x86_64 320/346 Running scriptlet: gcc-13.3.1-3.fc39.x86_64 320/346 Installing : gcc-c++-13.3.1-3.fc39.x86_64 321/346 Installing : libquadmath-devel-13.3.1-3.fc39.x86_64 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libXft-devel-2.3.8-3.fc39.x86_64 336/346 Installing : tk-devel-1:8.6.12-5.fc39.x86_64 337/346 Installing : R-core-devel-4.3.3-2.fc39.x86_64 338/346 Installing : R-java-devel-4.3.3-2.fc39.x86_64 339/346 Installing : R-devel-4.3.3-2.fc39.x86_64 340/346 Installing : annobin-plugin-gcc-12.60-1.fc39.x86_64 341/346 Running scriptlet: annobin-plugin-gcc-12.60-1.fc39.x86_64 341/346 Installing : gcc-plugin-annobin-13.3.1-3.fc39.x86_64 342/346 Running scriptlet: gcc-plugin-annobin-13.3.1-3.fc39.x86_64 342/346 Installing : R-CRAN-usethis-3.1.0-1.fc39.copr8317509.noarch 343/346 Installing : R-CRAN-OmopSketch-0.1.2-1.fc39.copr8249513.noarc 344/346 Installing : R-CRAN-CodelistGenerator-3.3.1-1.fc39.copr831747 345/346 Installing : R-CRAN-IncidencePrevalence-0.9.0-1.fc39.copr8320 346/346 Running scriptlet: fontconfig-2.14.2-6.fc39.x86_64 346/346 Running scriptlet: copy-jdk-configs-4.1-3.fc39.noarch 346/346 Running scriptlet: crypto-policies-scripts-20231204-1.git1e3a2e4.fc 346/346 Running scriptlet: nss-3.105.0-1.fc39.x86_64 346/346 Running scriptlet: java-17-openjdk-headless-1:17.0.13.0.11-3.fc39.x 346/346 Running scriptlet: java-17-openjdk-1:17.0.13.0.11-3.fc39.x86_64 346/346 Running scriptlet: java-17-openjdk-devel-1:17.0.13.0.11-3.fc39.x86_ 346/346 Running scriptlet: R-CRAN-IncidencePrevalence-0.9.0-1.fc39.copr8320 346/346 Installed products updated. Installed: R-CRAN-CDMConnector-1.6.1-1.fc39.copr8328795.noarch R-CRAN-CodelistGenerator-3.3.1-1.fc39.copr8317477.noarch R-CRAN-CohortCharacteristics-0.4.0-1.fc39.copr8317478.noarch R-CRAN-CohortConstructor-0.3.3-1.fc39.copr8317479.noarch R-CRAN-DBI-1.2.3-1.fc39.copr7522874.noarch R-CRAN-IncidencePrevalence-0.9.0-1.fc39.copr8320987.noarch R-CRAN-MASS-7.3.60.0.1-1.fc39.copr6895092.x86_64 R-CRAN-Matrix-1.6.5-1.fc39.copr6886765.x86_64 R-CRAN-OmopSketch-0.1.2-1.fc39.copr8249513.noarch R-CRAN-PatientProfiles-1.2.2-1.fc39.copr8324825.noarch R-CRAN-R6-2.5.1-1.fc39.copr6279323.noarch R-CRAN-RColorBrewer-1.1.3-1.fc39.copr6279333.noarch R-CRAN-RJSONIO-1.3.1.9-1.fc39.copr6700981.x86_64 R-CRAN-Rcpp-1.0.13.1-1.fc39.copr8204071.x86_64 R-CRAN-V8-6.0.0-1.fc39.copr8132151.x86_64 R-CRAN-askpass-1.2.1-1.fc39.copr8109609.x86_64 R-CRAN-backports-1.5.0-1.fc39.copr7483453.x86_64 R-CRAN-base64enc-0.1.3-3.fc39.copr6279336.x86_64 R-CRAN-bigD-0.3.0-1.fc39.copr8232783.noarch 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perl-Pod-Usage-4:2.03-500.fc39.noarch perl-Scalar-List-Utils-5:1.63-500.fc39.x86_64 perl-SelectSaver-1.02-502.fc39.noarch perl-Socket-4:2.037-3.fc39.x86_64 perl-Storable-1:3.32-500.fc39.x86_64 perl-Symbol-1.09-502.fc39.noarch perl-Term-ANSIColor-5.01-501.fc39.noarch perl-Term-Cap-1.18-500.fc39.noarch perl-Text-ParseWords-3.31-500.fc39.noarch perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch perl-Time-Local-2:1.350-3.fc39.noarch perl-URI-5.21-1.fc39.noarch perl-base-2.27-502.fc39.noarch perl-constant-1.33-501.fc39.noarch perl-if-0.61.000-502.fc39.noarch perl-interpreter-4:5.38.2-502.fc39.x86_64 perl-libnet-3.15-501.fc39.noarch perl-libs-4:5.38.2-502.fc39.x86_64 perl-locale-1.10-502.fc39.noarch perl-mro-1.28-502.fc39.x86_64 perl-overload-1.37-502.fc39.noarch perl-overloading-0.02-502.fc39.noarch perl-parent-1:0.241-500.fc39.noarch perl-podlators-1:5.01-500.fc39.noarch perl-vars-1.05-502.fc39.noarch pixman-0.42.2-2.fc39.x86_64 python-pip-wheel-23.2.1-2.fc39.noarch python3-3.12.7-1.fc39.x86_64 python3-libs-3.12.7-1.fc39.x86_64 python3-setuptools-67.7.2-8.fc39.noarch sysprof-capture-devel-45.1-1.fc39.x86_64 tcl-1:8.6.12-5.fc39.x86_64 tcl-devel-1:8.6.12-5.fc39.x86_64 tk-1:8.6.12-5.fc39.x86_64 tk-devel-1:8.6.12-5.fc39.x86_64 tre-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 tre-common-0.8.0-41.20140228gitc2f5d13.fc39.noarch tre-devel-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 ttmkfdir-3.0.9-69.fc39.x86_64 tzdata-2024a-2.fc39.noarch tzdata-java-2024a-2.fc39.noarch xclip-0.13-20.git11cba61.fc39.x86_64 xdg-utils-1.1.3-15.fc39.noarch xml-common-0.6.3-61.fc39.noarch xorg-x11-fonts-Type1-7.5-36.fc39.noarch xorg-x11-proto-devel-2023.2-2.fc39.noarch xz-devel-5.4.4-1.fc39.x86_64 zlib-devel-1.2.13-4.fc39.x86_64 Complete! Finish: build setup for R-CRAN-PhenotypeR-0.1.0-1.fc39.copr8353650.src.rpm Start: rpmbuild R-CRAN-PhenotypeR-0.1.0-1.fc39.copr8353650.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.00NEL9 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf PhenotypeR + /usr/bin/mkdir -p PhenotypeR + cd PhenotypeR + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/PhenotypeR_0.1.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + rm -rf /builddir/build/BUILD/PhenotypeR-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/PhenotypeR-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d PhenotypeR/src ']' + true + '[' -d PhenotypeR/src ']' + true + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.esEJux + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd PhenotypeR + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.fwIiZZ + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-CRAN-PhenotypeR-0.1.0-1.fc39.copr8353650.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-CRAN-PhenotypeR-0.1.0-1.fc39.copr8353650.x86_64 ++ dirname /builddir/build/BUILDROOT/R-CRAN-PhenotypeR-0.1.0-1.fc39.copr8353650.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-CRAN-PhenotypeR-0.1.0-1.fc39.copr8353650.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd PhenotypeR + mkdir -p /builddir/build/BUILDROOT/R-CRAN-PhenotypeR-0.1.0-1.fc39.copr8353650.x86_64/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-CRAN-PhenotypeR-0.1.0-1.fc39.copr8353650.x86_64/usr/local/lib/R/library PhenotypeR * installing *source* package ‘PhenotypeR’ ... ** package ‘PhenotypeR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘PhenotypeR’ finding HTML links ... done PhenotypeR-package html addCodelistAttribute html codelistDiagnostics html cohortDiagnostics html cohortDoc html databaseDiagnostics html directoryDoc html matchedDiagnostics html matchedSampleDoc html phenotypeDiagnostics html pipe html populationDiagnostics html populationSampleDoc html reexports html resultDoc html shinyDiagnostics html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PhenotypeR) + test -d PhenotypeR/src + rm -f /builddir/build/BUILDROOT/R-CRAN-PhenotypeR-0.1.0-1.fc39.copr8353650.x86_64/usr/local/lib/R/library/R.css + find /builddir/build/BUILDROOT/R-CRAN-PhenotypeR-0.1.0-1.fc39.copr8353650.x86_64/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILDROOT/R-CRAN-PhenotypeR-0.1.0-1.fc39.copr8353650.x86_64@@g '{}' ';' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.1.0-1.fc39.copr8353650 --unique-debug-suffix -0.1.0-1.fc39.copr8353650.x86_64 --unique-debug-src-base R-CRAN-PhenotypeR-0.1.0-1.fc39.copr8353650.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/PhenotypeR find-debuginfo: starting Extracting debug info from 0 files Creating .debug symlinks for symlinks to ELF files find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: R-CRAN-PhenotypeR-0.1.0-1.fc39.copr8353650.noarch Provides: R-CRAN-PhenotypeR = 0.1.0-1.fc39.copr8353650 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-CRAN-PhenotypeR-0.1.0-1.fc39.copr8353650.x86_64 Wrote: /builddir/build/RPMS/R-CRAN-PhenotypeR-0.1.0-1.fc39.copr8353650.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.4D1tvZ + umask 022 + cd /builddir/build/BUILD + cd PhenotypeR + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-CRAN-PhenotypeR-0.1.0-1.fc39.copr8353650.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.PciEtq + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/PhenotypeR-SPECPARTS + rm -rf PhenotypeR PhenotypeR.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild R-CRAN-PhenotypeR-0.1.0-1.fc39.copr8353650.src.rpm Finish: build phase for R-CRAN-PhenotypeR-0.1.0-1.fc39.copr8353650.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1733536178.680108/root/var/log/dnf.log /var/lib/mock/fedora-39-x86_64-1733536178.680108/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1733536178.680108/root/var/log/dnf.rpm.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-PhenotypeR-0.1.0-1.fc39.copr8353650.src.rpm) Config(child) 0 minutes 53 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-CRAN-PhenotypeR", "epoch": null, "version": "0.1.0", "release": "1.fc39.copr8353650", "arch": "noarch" }, { "name": "R-CRAN-PhenotypeR", "epoch": null, "version": "0.1.0", "release": "1.fc39.copr8353650", "arch": "src" } ] } RPMResults finished