%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  PresenceAbsence
%global packver   1.1.11
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.1.11
Release:          1%{?dist}%{?buildtag}
Summary:          Presence-Absence Model Evaluation

License:          Unlimited
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.2.0
Requires:         R-core >= 2.2.0
BuildArch:        noarch

%description
Provides a set of functions useful when evaluating the results of
presence-absence models. Package includes functions for calculating
threshold dependent measures such as confusion matrices, pcc, sensitivity,
specificity, and Kappa, and produces plots of each measure as the
threshold is varied. It will calculate optimal threshold choice according
to a choice of optimization criteria. It also includes functions to plot
the threshold independent ROC curves along with the associated AUC (area
under the curve).

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}