%global __brp_check_rpaths %{nil}
%global packname  falconx
%global packver   0.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.2
Release:          3%{?dist}%{?buildtag}
Summary:          Finding Allele-Specific Copy Number in Whole-Exome SequencingData

License:          GPL (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.0.1
Requires:         R-core >= 3.0.1

%description
This is a method for Allele-specific DNA Copy Number profiling for
whole-Exome sequencing data.  Given the allele-specific coverage and site
biases at the variant loci, this program segments the genome into regions
of homogeneous allele-specific copy number.  It requires, as input, the
read counts for each variant allele in a pair of case and control samples,
as well as the site biases. For detection of somatic mutations, the case
and control samples can be the tumor and normal sample from the same
individual.  The implemented method is based on the paper: Chen, H.,
Jiang, Y., Maxwell, K., Nathanson, K. and Zhang, N. (under review).
Allele-specific copy number estimation by whole Exome sequencing.

%prep
%setup -q -c -n %{packname}


%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css

%files
%{rlibdir}/%{packname}