%global __brp_check_rpaths %{nil}
%global packname  GWsignif
%global packver   1.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.2
Release:          3%{?dist}%{?buildtag}
Summary:          Estimating Genome-Wide Significance for Whole Genome SequencingStudies, Either Single SNP Tests or Region-Based Tests

License:          GPL (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch

%description
The correlations and linkage disequilibrium between tests can vary as a
function of minor allele frequency thresholds used to filter variants, and
also varies with different choices of test statistic for region-based
tests. Appropriate genome-wide significance thresholds can be estimated
empirically through permutation on only a small proportion of the whole
genome.

%prep
%setup -q -c -n %{packname}


%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css

%files
%{rlibdir}/%{packname}