%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  HWEintrinsic
%global packver   1.2.3
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.2.3
Release:          1%{?dist}%{?buildtag}
Summary:          Objective Bayesian Testing for the Hardy-Weinberg Equilibrium Problem

License:          GPL (>= 2) | file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-methods 
BuildRequires:    R-utils 
BuildRequires:    R-graphics 
BuildRequires:    R-grDevices 
BuildRequires:    R-stats 
Requires:         R-methods 
Requires:         R-utils 
Requires:         R-graphics 
Requires:         R-grDevices 
Requires:         R-stats 

%description
General (multi-allelic) Hardy-Weinberg equilibrium problem from an
objective Bayesian testing standpoint. This aim is achieved through the
identification of a class of priors specifically designed for this testing
problem. A class of intrinsic priors under the full model is considered.
This class is indexed by a tuning quantity, the training sample size, as
discussed in Consonni, Moreno and Venturini (2010). These priors are
objective, satisfy Savage's continuity condition and have proved to behave
extremely well for many statistical testing problems.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}