%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  hypergate
%global packver   0.8.5
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.8.5
Release:          1%{?dist}%{?buildtag}
Summary:          Machine Learning of Hyperrectangular Gating Strategies for High-Dimensional Cytometry

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-stats 
BuildRequires:    R-grDevices 
BuildRequires:    R-utils 
BuildRequires:    R-graphics 
Requires:         R-stats 
Requires:         R-grDevices 
Requires:         R-utils 
Requires:         R-graphics 

%description
Given a high-dimensional dataset that typically represents a cytometry
dataset, and a subset of the datapoints, this algorithm outputs an
hyperrectangle so that datapoints within the hyperrectangle best
correspond to the specified subset. In essence, this allows the conversion
of clustering algorithms' outputs to gating strategies outputs.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}