%global __brp_check_rpaths %{nil}
%global packname  depthTools
%global packver   0.7
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.7
Release:          1%{?dist}%{?buildtag}
Summary:          Depth Tools Package

License:          GPL (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.8.0
Requires:         R-core >= 2.8.0
BuildArch:        noarch

%description
Implementation of different statistical tools for the description and
analysis of gene expression data based on the concept of data depth,
namely, the scale curves for visualizing the dispersion of one or various
groups of samples (e.g. types of tumors), a rank test to decide whether
two groups of samples come from a single distribution and two methods of
supervised classification techniques, the DS and TAD methods. All these
techniques are based on the Modified Band Depth, which is a recent notion
of depth with a low computational cost, what renders it very appropriate
for high dimensional data such as gene expression data.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}