This report is automatically generated with the R package knitr (version 1.5) .

# Chapter 20 - Ten Tips on Working with Packages Poking Around the Nooks and Crannies of
# CRAN
options(repos = c(CRAN = "http://cran.ma.imperial.ac.uk/"))
## Finding Interesting Packages Installing Packages
install.packages("fortunes")
## Error in install.packages : Updating loaded packages
## Loading Packages
library("fortunes")
## Reading the Package Manual and Vignette
library(help = fortunes)
vignette("fortunes")
## Updating Packages
update.packages()
## Warning: package 'arules' in library 'C:/Revolution/R-Enterprise-7.1/R-3.0.2/library' will not be updated
## Warning: package 'car' in library 'C:/Revolution/R-Enterprise-7.1/R-3.0.2/library' will not be updated
## Warning: package 'class' in library 'C:/Revolution/R-Enterprise-7.1/R-3.0.2/library' will not be updated
## Warning: package 'forecast' in library 'C:/Revolution/R-Enterprise-7.1/R-3.0.2/library' will not be updated
## Warning: package 'Hmisc' in library 'C:/Revolution/R-Enterprise-7.1/R-3.0.2/library' will not be updated
## Warning: package 'igraph' in library 'C:/Revolution/R-Enterprise-7.1/R-3.0.2/library' will not be updated
## Warning: package 'KernSmooth' in library 'C:/Revolution/R-Enterprise-7.1/R-3.0.2/library' will not be updated
## Warning: package 'MASS' in library 'C:/Revolution/R-Enterprise-7.1/R-3.0.2/library' will not be updated
## Warning: package 'Matrix' in library 'C:/Revolution/R-Enterprise-7.1/R-3.0.2/library' will not be updated
## Warning: package 'nnet' in library 'C:/Revolution/R-Enterprise-7.1/R-3.0.2/library' will not be updated
## Warning: package 'plyr' in library 'C:/Revolution/R-Enterprise-7.1/R-3.0.2/library' will not be updated
## Warning: package 'Rcpp' in library 'C:/Revolution/R-Enterprise-7.1/R-3.0.2/library' will not be updated
## Warning: package 'RcppArmadillo' in library 'C:/Revolution/R-Enterprise-7.1/R-3.0.2/library' will not be updated
## Warning: package 'rgeos' in library 'C:/Revolution/R-Enterprise-7.1/R-3.0.2/library' will not be updated
## Warning: package 'rJava' in library 'C:/Revolution/R-Enterprise-7.1/R-3.0.2/library' will not be updated
## Warning: package 'rpart' in library 'C:/Revolution/R-Enterprise-7.1/R-3.0.2/library' will not be updated
## Warning: package 'rpart.plot' in library 'C:/Revolution/R-Enterprise-7.1/R-3.0.2/library' will not be updated
## Warning: package 'scales' in library 'C:/Revolution/R-Enterprise-7.1/R-3.0.2/library' will not be updated
## Warning: package 'sp' in library 'C:/Revolution/R-Enterprise-7.1/R-3.0.2/library' will not be updated
## Warning: package 'zoo' in library 'C:/Revolution/R-Enterprise-7.1/R-3.0.2/library' will not be updated
## arm :
##  Version 1.6-10 installed in C:/Users/Andrie/Documents/R/win-library/3.0 
##  Version 1.7-03 available at http://cran.ma.imperial.ac.uk
## arules :
##  Version 1.1-1 installed in C:/Users/Andrie/Documents/R/win-library/3.0 
##  Version 1.1-2 available at http://cran.ma.imperial.ac.uk
## BH :
##  Version 1.51.0-4 installed in C:/Users/Andrie/Documents/R/win-library/3.0 
##  Version 1.54.0-2 available at http://cran.ma.imperial.ac.uk
## bit :
##  Version 1.1-11 installed in C:/Users/Andrie/Documents/R/win-library/3.0 
##  Version 1.1-12 available at http://cran.ma.imperial.ac.uk
## cancelled by user
## Unloading Packages
search()
##  [1] ".GlobalEnv"            "package:fortunes"      "package:BiocInstaller"
##  [4] "package:ggplot2"       "package:reshape2"      "package:sos"          
##  [7] "package:brew"          "package:stringr"       "package:knitr"        
## [10] "package:plyr"          "tools:rstudio"         "package:Revobase"     
## [13] "package:RevoMods"      "package:RevoScaleR"    "package:lattice"      
## [16] "package:rpart"         "package:stats"         "package:graphics"     
## [19] "package:grDevices"     "package:utils"         "package:datasets"     
## [22] "package:methods"       "Autoloads"             "package:base"
detach(package:fortunes, unload = TRUE)
## Forging Ahead with R-Forge
install.packages("data.table", repos = "http://R-Forge.R-project.org")
## Installing package into 'C:/Users/Andrie/Documents/R/win-library/3.0'
## (as 'lib' is unspecified)
## package 'data.table' successfully unpacked and MD5 sums checked
## 
## The downloaded binary packages are in
## 	C:\Users\Andrie\AppData\Local\Temp\RtmpKC3x2f\downloaded_packages
## Conducting Installations from BioConductor
source("http://bioconductor.org/biocLite.R")
## Bioconductor version 2.13 (BiocInstaller 1.12.1), ?biocLite for help
## A newer version of Bioconductor is available after installing a new version of R,
##   ?BiocUpgrade for help
## Reading the R Manual

The R session information (including the OS info, R version and all packages used):

sessionInfo()
## R version 3.0.2 (2013-09-25)
## Platform: x86_64-w64-mingw32/x64 (64-bit)
## 
## locale:
## [1] LC_COLLATE=English_United Kingdom.1252  LC_CTYPE=English_United Kingdom.1252   
## [3] LC_MONETARY=English_United Kingdom.1252 LC_NUMERIC=C                           
## [5] LC_TIME=English_United Kingdom.1252    
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
##  [1] BiocInstaller_1.12.1 ggplot2_0.9.3.1      reshape2_1.2.2       sos_1.3-8           
##  [5] brew_1.0-6           stringr_0.6.2        knitr_1.5            plyr_1.8            
##  [9] Revobase_7.1.0       RevoMods_7.1.0       RevoScaleR_7.1.0     lattice_0.20-27     
## [13] rpart_4.1-2         
## 
## loaded via a namespace (and not attached):
##  [1] codetools_0.2-8    colorspace_1.2-4   dichromat_2.0-0    digest_0.6.4      
##  [5] evaluate_0.5.1     foreach_1.4.1      formatR_0.10       grid_3.0.2        
##  [9] gtable_0.1.2       highr_0.3          iterators_1.0.6    labeling_0.2      
## [13] MASS_7.3-29        munsell_0.4.2      proto_0.3-10       RColorBrewer_1.0-5
## [17] scales_0.2.3       tools_3.0.2
Sys.time()
## [1] "2014-05-13 15:07:17 BST"