%global __brp_check_rpaths %{nil}
%global packname  SensitivityCaseControl
%global packver   2.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          2.2
Release:          1%{?dist}%{?buildtag}
Summary:          Sensitivity Analysis for Case-Control Studies

License:          GPL (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch

%description
Sensitivity analysis for case-control studies in which some cases may meet
a more narrow definition of being a case compared to other cases which
only meet a broad definition.  The sensitivity analyses are described in
Small, Cheng, Halloran and Rosenbaum (2013, "Case Definition and
Sensitivity Analysis", Journal of the American Statistical Association,
1457-1468).  The functions sens.analysis.mh and
sens.analysis.aberrant.rank provide sensitivity analyses based on the
Mantel-Haenszel test statistic and aberrant rank test statistic as
described in Rosenbaum (1991, "Sensitivity Analysis for Matched Case
Control Studies", Biometrics); see also Section 1 of Small et al.  The
function adaptive.case.test provides adaptive inferences as described in
Section 5 of Small et al.  The function adaptive.noether.brown provides a
sensitivity analysis for a matched cohort study based on an adaptive test.
The other functions in the package are internal functions.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}