%global __brp_check_rpaths %{nil}
%global packname  TRAMPR
%global packver   1.0-10
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.10
Release:          1%{?dist}%{?buildtag}
Summary:          'TRFLP' Analysis and Matching Package for R

License:          GPL-2
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.4
Requires:         R-core >= 2.4
BuildArch:        noarch

%description
Matching terminal restriction fragment length polymorphism ('TRFLP')
profiles between unknown samples and a database of known samples.
'TRAMPR' facilitates analysis of many unknown profiles at once, and
provides tools for working directly with electrophoresis output through to
generating summaries suitable for community analyses with R's rich set of
statistical functions.  'TRAMPR' also resolves the issues of multiple
'TRFLP' profiles within a species, and shared 'TRFLP' profiles across
species.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}