%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  hdiVAR
%global packver   1.0.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.2
Release:          1%{?dist}%{?buildtag}
Summary:          Statistical Inference for Noisy Vector Autoregression

License:          GPL (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.1
Requires:         R-core >= 3.1
BuildArch:        noarch
BuildRequires:    R-CRAN-lpSolve 
BuildRequires:    R-CRAN-abind 
Requires:         R-CRAN-lpSolve 
Requires:         R-CRAN-abind 

%description
The model is high-dimensional vector autoregression with measurement
error, also known as linear gaussian state-space model. Provable sparse
expectation-maximization algorithm is provided for the estimation of
transition matrix and noise variances. Global and simultaneous testings
are implemented for transition matrix with false discovery rate control.
For more information, see the accompanying paper: Lyu, X., Kang, J., & Li,
L. (2023). "Statistical inference for high-dimensional vector
autoregression with measurement error", Statistica Sinica.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}