%global __brp_check_rpaths %{nil}
%global packname  htestClust
%global packver   0.2.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.2.2
Release:          1%{?dist}%{?buildtag}
Summary:          Reweighted Marginal Hypothesis Tests for Clustered Data

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-CRAN-bootstrap 
BuildRequires:    R-graphics 
BuildRequires:    R-CRAN-MASS 
BuildRequires:    R-stats 
Requires:         R-CRAN-bootstrap 
Requires:         R-graphics 
Requires:         R-CRAN-MASS 
Requires:         R-stats 

%description
A collection of reweighted marginal hypothesis tests for clustered data,
based on reweighting methods of Williamson, J., Datta, S., and Satten, G.
(2003) <doi:10.1111/1541-0420.00005>. The tests in this collection are
clustered analogs to well-known hypothesis tests in the classical setting,
and are appropriate for data with cluster- and/or group-size
informativeness. The syntax and output of functions are modeled after
common, recognizable functions native to R. Methods used in the package
refer to Gregg, M., Datta, S., and Lorenz, D. (2020)
<doi:10.1177/0962280220928572>, Nevalainen, J., Oja, H., and Datta, S.
(2017) <doi:10.1002/sim.7288> Dutta, S. and Datta, S. (2015)
<doi:10.1111/biom.12447>, Lorenz, D., Datta, S., and Harkema, S. (2011)
<doi:10.1002/sim.4368>, Datta, S. and Satten, G. (2008)
<doi:10.1111/j.1541-0420.2007.00923.x>, Datta, S. and Satten, G. (2005)
<doi:10.1198/016214504000001583>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}