computeCore {coreCollection} | R Documentation |
Compute the core
Description
The function computeCore
is used internally by
the CoreCollection
object to compute the core.
Usage
computeCore(algorithm, method, dist, groups)
Arguments
algorithm |
applied algorithm to find solution with method: currently, only |
method |
required method for choosing the entries within the groups: |
dist |
distance matrix, used for distances and implicitly defining the set of entries |
groups |
the initially created subdivision into groups |
Details
The A-NE
method requires the core to minimize the average distance between each accession and
the nearest entry within the core. The E-NE
method requires the core to maximize the
average distance between each core entry and its nearest neighbouring entry within the core.
The E-E
method requires the core to maximize the average distance between all core entries.