%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  smoke
%global packver   2.0.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          2.0.1
Release:          1%{?dist}%{?buildtag}
Summary:          Small Molecule Octet/BLI Kinetics Experiment

License:          GPL-2 | GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-methods 
BuildRequires:    R-graphics 
BuildRequires:    R-grDevices 
BuildRequires:    R-stats 
BuildRequires:    R-utils 
BuildRequires:    R-CRAN-Rdpack 
Requires:         R-methods 
Requires:         R-graphics 
Requires:         R-grDevices 
Requires:         R-stats 
Requires:         R-utils 
Requires:         R-CRAN-Rdpack 

%description
Bio-Layer Interferometry (BLI) is a technology to determine the binding
kinetics between biomolecules. BLI signals are small and noisy when small
molecules are investigated as ligands (analytes). We develop this package
to process and analyze the BLI data acquired on Octet Red96 from Fortebio
more accurately. Sun Q., Li X., et al (2020)
<doi:10.1038/s41467-019-14238-3>. In this new version, we organize the BLI
experiment data and analysis methods into a S4 class with self-explaining
structure.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}