%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  MGDrivE2
%global packver   2.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          2.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Mosquito Gene Drive Explorer 2

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.1.0
Requires:         R-core >= 3.1.0
BuildArch:        noarch
BuildRequires:    R-CRAN-Matrix 
BuildRequires:    R-CRAN-deSolve 
BuildRequires:    R-CRAN-statmod 
Requires:         R-CRAN-Matrix 
Requires:         R-CRAN-deSolve 
Requires:         R-CRAN-statmod 

%description
A simulation modeling framework which significantly extends capabilities
from the 'MGDrivE' simulation package via a new mathematical and
computational framework based on stochastic Petri nets. For more
information about 'MGDrivE', see our publication: Sánchez et al. (2019)
<doi:10.1111/2041-210X.13318> Some of the notable capabilities of
'MGDrivE2' include: incorporation of human populations, epidemiological
dynamics, time-varying parameters, and a continuous-time simulation
framework with various sampling algorithms for both deterministic and
stochastic interpretations. 'MGDrivE2' relies on the genetic inheritance
structures provided in package 'MGDrivE', so we suggest installing that
package initially.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}