%global __brp_check_rpaths %{nil}
%global packname  MAPITR
%global packver   1.1.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.1.2
Release:          1%{?dist}%{?buildtag}
Summary:          MArginal ePIstasis Test for Regions

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.3.0
Requires:         R-core >= 3.3.0
BuildRequires:    R-CRAN-Rcpp >= 1.0.5
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-doParallel 
BuildRequires:    R-CRAN-CompQuadForm 
BuildRequires:    R-CRAN-RcppArmadillo 
Requires:         R-CRAN-Rcpp >= 1.0.5
Requires:         R-stats 
Requires:         R-CRAN-doParallel 
Requires:         R-CRAN-CompQuadForm 

%description
A genetic analysis tool and variance component model for identifying
marginal epistasis between pathways and the rest of the genome. 'MAPITR'
uses as input a matrix of genotypes, a vector of phenotypes, and a list of
pathways. 'MAPITR' then iteratively tests each pathway for epistasis
between any variants within the pathway versus any variants remaining in
the rest of the genome. 'MAPITR' returns results in the form of p-values
for every pathway indicating whether the null model of there being no
epistatic interactions between a pathway and the rest of the genome can be
rejected.

%prep
%setup -q -c -n %{packname}

find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}