compute_tree_correlations_matrix.scOU {PhylogeneticEM} | R Documentation |
Matrix of tree-induced correlations for the scOU
Description
compute_tree_correlations_matrix.scOU
computes the (n+m)x(m+n) matrix of correlations
induced by the tree. It takes two cases in consideration: root fixed, or root in stationary
state.
Usage
compute_tree_correlations_matrix.scOU(
times_shared,
distances_phylo,
params_old,
...
)
Arguments
times_shared |
times of shared ancestry of all nodes and tips, result of function
|
distances_phylo |
(matrix) : phylogenetic distance, result of function
|
params_old |
(list) : old parameters to be used in the E step |
Value
matrix of variance covariance for the scOU
[Package PhylogeneticEM version 1.7.0 Index]