Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c14f' (ED25519) to the list of known hosts. cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-zva2umd9/R-CRAN-pedgene rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading pedgene_3.9.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o pedgene_3.9.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/iucar/cran/R-CRAN-pedgene/pedgene_3.9.tar.gz/md5/2197926e3d112ba750c3d8f68ec88994/pedgene_3.9.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 246k 100 246k 0 0 3233k 0 --:--:-- --:--:-- --:--:-- 3249k INFO: Reading stdout from command: md5sum pedgene_3.9.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-zva2umd9/R-CRAN-pedgene/R-CRAN-pedgene.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-zva2umd9/R-CRAN-pedgene --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1714187383.566076 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.5 starting (python version = 3.12.1, NVR = mock-5.5-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-zva2umd9/R-CRAN-pedgene/R-CRAN-pedgene.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-zva2umd9/R-CRAN-pedgene --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1714187383.566076 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-zva2umd9/R-CRAN-pedgene/R-CRAN-pedgene.spec) Config(fedora-40-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.5 INFO: Mock Version: 5.5 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-1714187383.566076/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.19.2-1.fc39.noarch python3-dnf-plugins-core-4.6.0-1.fc39.noarch yum-4.19.2-1.fc39.noarch dnf5-5.1.17-1.fc39.x86_64 dnf5-plugins-5.1.17-1.fc39.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: updates 100% | 109.5 KiB/s | 21.8 KiB | 00m00s fedora 100% | 62.8 KiB/s | 22.7 KiB | 00m00s Copr repository 100% | 6.7 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 15.0 MiB/s | 13.5 MiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.26-3.fc40 fedora 8.1 MiB bzip2 x86_64 1.0.8-18.fc40 fedora 91.7 KiB coreutils x86_64 9.4-6.fc40 fedora 5.8 MiB cpio x86_64 2.15-1.fc40 fedora 1.1 MiB diffutils x86_64 3.10-5.fc40 fedora 1.6 MiB fedora-release-common noarch 40-39 updates 19.1 KiB findutils x86_64 1:4.9.0-8.fc40 fedora 1.5 MiB gawk x86_64 5.3.0-3.fc40 fedora 1.7 MiB glibc-minimal-langpack x86_64 2.39-8.fc40 updates 0.0 B grep x86_64 3.11-7.fc40 fedora 1.0 MiB gzip x86_64 1.13-1.fc40 fedora 385.0 KiB info x86_64 7.1-2.fc40 fedora 357.8 KiB patch x86_64 2.7.6-24.fc40 fedora 262.8 KiB redhat-rpm-config noarch 286-1.fc40 fedora 185.2 KiB rpm-build x86_64 4.19.1.1-1.fc40 fedora 173.7 KiB sed x86_64 4.9-1.fc40 fedora 861.5 KiB shadow-utils x86_64 2:4.15.1-2.fc40 updates 4.1 MiB tar x86_64 2:1.35-3.fc40 fedora 2.9 MiB unzip x86_64 6.0-63.fc40 fedora 382.8 KiB util-linux x86_64 2.40-13.fc40 updates 3.7 MiB which x86_64 2.21-41.fc40 fedora 80.2 KiB xz x86_64 1:5.4.6-3.fc40 fedora 2.0 MiB Installing dependencies: alternatives x86_64 1.26-3.fc40 fedora 62.3 KiB ansible-srpm-macros noarch 1-14.fc40 fedora 35.7 KiB audit-libs x86_64 4.0.1-1.fc40 fedora 327.3 KiB authselect x86_64 1.5.0-5.fc40 fedora 153.6 KiB authselect-libs x86_64 1.5.0-5.fc40 fedora 818.3 KiB basesystem noarch 11-20.fc40 fedora 0.0 B binutils x86_64 2.41-34.fc40 fedora 26.4 MiB binutils-gold x86_64 2.41-34.fc40 fedora 2.0 MiB bzip2-libs x86_64 1.0.8-18.fc40 fedora 80.7 KiB ca-certificates noarch 2023.2.62_v7.0.401-6.fc40 fedora 2.3 MiB coreutils-common x86_64 9.4-6.fc40 fedora 11.4 MiB cracklib x86_64 2.9.11-5.fc40 fedora 238.9 KiB crypto-policies noarch 20240201-2.git9f501f3.fc40 fedora 149.3 KiB curl x86_64 8.6.0-8.fc40 updates 734.6 KiB cyrus-sasl-lib x86_64 2.1.28-19.fc40 fedora 2.3 MiB debugedit x86_64 5.0-14.fc40 fedora 199.0 KiB dwz x86_64 0.15-6.fc40 fedora 290.9 KiB ed x86_64 1.20.1-1.fc40 fedora 146.5 KiB efi-srpm-macros noarch 5-11.fc40 fedora 40.1 KiB elfutils x86_64 0.191-4.fc40 fedora 2.5 MiB elfutils-debuginfod-client x86_64 0.191-4.fc40 fedora 64.9 KiB elfutils-default-yama-scope noarch 0.191-4.fc40 fedora 1.8 KiB elfutils-libelf x86_64 0.191-4.fc40 fedora 1.2 MiB elfutils-libs x86_64 0.191-4.fc40 fedora 646.1 KiB fedora-gpg-keys noarch 40-1 fedora 125.0 KiB fedora-release noarch 40-39 updates 0.0 B fedora-release-identity-basic noarch 40-39 updates 654.0 B fedora-repos noarch 40-1 fedora 4.9 KiB file x86_64 5.45-4.fc40 fedora 103.5 KiB file-libs x86_64 5.45-4.fc40 fedora 9.9 MiB filesystem x86_64 3.18-8.fc40 fedora 106.0 B fonts-srpm-macros noarch 1:2.0.5-14.fc40 fedora 55.3 KiB forge-srpm-macros noarch 0.2.0-3.fc40 fedora 37.4 KiB fpc-srpm-macros noarch 1.3-12.fc40 fedora 144.0 B gdb-minimal x86_64 14.2-1.fc40 fedora 12.7 MiB gdbm x86_64 1:1.23-6.fc40 fedora 460.9 KiB gdbm-libs x86_64 1:1.23-6.fc40 fedora 121.9 KiB ghc-srpm-macros noarch 1.9-1.fc40 fedora 716.0 B glibc x86_64 2.39-8.fc40 updates 6.7 MiB glibc-common x86_64 2.39-8.fc40 updates 1.0 MiB glibc-gconv-extra x86_64 2.39-8.fc40 updates 7.8 MiB gmp x86_64 1:6.2.1-8.fc40 fedora 794.6 KiB gnat-srpm-macros noarch 6-5.fc40 fedora 1.0 KiB go-srpm-macros noarch 3.5.0-1.fc40 fedora 60.6 KiB jansson x86_64 2.13.1-9.fc40 fedora 88.3 KiB kernel-srpm-macros noarch 1.0-23.fc40 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-3.fc40 fedora 54.4 KiB krb5-libs x86_64 1.21.2-5.fc40 fedora 2.3 MiB libacl x86_64 2.3.2-1.fc40 fedora 40.0 KiB libarchive x86_64 3.7.2-3.fc40 fedora 914.6 KiB libattr x86_64 2.5.2-3.fc40 fedora 28.5 KiB libblkid x86_64 2.40-13.fc40 updates 262.5 KiB libbrotli x86_64 1.1.0-3.fc40 fedora 829.5 KiB libcap x86_64 2.69-8.fc40 updates 219.8 KiB libcap-ng x86_64 0.8.4-4.fc40 fedora 73.1 KiB libcom_err x86_64 1.47.0-5.fc40 fedora 67.2 KiB libcurl x86_64 8.6.0-8.fc40 updates 772.8 KiB libeconf x86_64 0.6.2-1.fc40 fedora 58.0 KiB libevent x86_64 2.1.12-12.fc40 fedora 895.6 KiB libfdisk x86_64 2.40-13.fc40 updates 362.9 KiB libffi x86_64 3.4.4-7.fc40 fedora 81.6 KiB libgcc x86_64 14.0.1-0.15.fc40 fedora 270.6 KiB libgomp x86_64 14.0.1-0.15.fc40 fedora 519.4 KiB libidn2 x86_64 2.3.7-1.fc40 fedora 329.1 KiB libmount x86_64 2.40-13.fc40 updates 351.8 KiB libnghttp2 x86_64 1.59.0-3.fc40 updates 166.1 KiB libnsl2 x86_64 2.0.1-1.fc40 fedora 57.9 KiB libpkgconf x86_64 2.1.0-1.fc40 fedora 74.2 KiB libpsl x86_64 0.21.5-3.fc40 fedora 80.5 KiB libpwquality x86_64 1.4.5-9.fc40 fedora 417.8 KiB libselinux x86_64 3.6-4.fc40 fedora 173.0 KiB libsemanage x86_64 3.6-3.fc40 fedora 293.5 KiB libsepol x86_64 3.6-3.fc40 fedora 802.0 KiB libsmartcols x86_64 2.40-13.fc40 updates 180.4 KiB libssh x86_64 0.10.6-5.fc40 fedora 509.3 KiB libssh-config noarch 0.10.6-5.fc40 fedora 277.0 B libstdc++ x86_64 14.0.1-0.15.fc40 fedora 2.8 MiB libtasn1 x86_64 4.19.0-6.fc40 fedora 175.7 KiB libtirpc x86_64 1.3.4-1.rc3.fc40 fedora 202.8 KiB libtool-ltdl x86_64 2.4.7-10.fc40 fedora 66.2 KiB libunistring x86_64 1.1-7.fc40 fedora 1.7 MiB libutempter x86_64 1.2.1-13.fc40 fedora 57.7 KiB libuuid x86_64 2.40-13.fc40 updates 37.4 KiB libverto x86_64 0.3.2-8.fc40 fedora 29.5 KiB libxcrypt x86_64 4.4.36-5.fc40 fedora 262.8 KiB libxml2 x86_64 2.12.6-1.fc40 updates 1.7 MiB libzstd x86_64 1.5.6-1.fc40 updates 787.9 KiB lua-libs x86_64 5.4.6-5.fc40 fedora 281.1 KiB lua-srpm-macros noarch 1-13.fc40 fedora 1.3 KiB lz4-libs x86_64 1.9.4-6.fc40 fedora 129.4 KiB mpfr x86_64 4.2.1-3.fc40 fedora 832.0 KiB ncurses-base noarch 6.4-12.20240127.fc40 fedora 326.2 KiB ncurses-libs x86_64 6.4-12.20240127.fc40 fedora 963.2 KiB ocaml-srpm-macros noarch 9-3.fc40 fedora 1.9 KiB openblas-srpm-macros noarch 2-16.fc40 fedora 104.0 B openldap x86_64 2.6.7-1.fc40 fedora 635.1 KiB openssl-libs x86_64 1:3.2.1-2.fc40 fedora 7.8 MiB p11-kit x86_64 0.25.3-4.fc40 fedora 2.2 MiB p11-kit-trust x86_64 0.25.3-4.fc40 fedora 391.4 KiB package-notes-srpm-macros noarch 0.5-11.fc40 fedora 1.6 KiB pam x86_64 1.6.0-2.fc40 fedora 1.8 MiB pam-libs x86_64 1.6.0-2.fc40 fedora 135.0 KiB pcre2 x86_64 10.42-2.fc40.2 fedora 637.6 KiB pcre2-syntax noarch 10.42-2.fc40.2 fedora 235.1 KiB perl-srpm-macros noarch 1-53.fc40 fedora 861.0 B pkgconf x86_64 2.1.0-1.fc40 fedora 82.4 KiB pkgconf-m4 noarch 2.1.0-1.fc40 fedora 13.9 KiB pkgconf-pkg-config x86_64 2.1.0-1.fc40 fedora 989.0 B popt x86_64 1.19-6.fc40 fedora 136.9 KiB publicsuffix-list-dafsa noarch 20240107-3.fc40 fedora 67.5 KiB pyproject-srpm-macros noarch 1.12.0-1.fc40 fedora 1.5 KiB python-srpm-macros noarch 3.12-7.fc40 fedora 50.1 KiB qt5-srpm-macros noarch 5.15.13-1.fc40 fedora 492.0 B qt6-srpm-macros noarch 6.7.0-1.fc40 updates 456.0 B readline x86_64 8.2-8.fc40 fedora 489.2 KiB rpm x86_64 4.19.1.1-1.fc40 fedora 3.0 MiB rpm-build-libs x86_64 4.19.1.1-1.fc40 fedora 198.4 KiB rpm-libs x86_64 4.19.1.1-1.fc40 fedora 709.9 KiB rpm-sequoia x86_64 1.6.0-2.fc40 fedora 2.2 MiB rust-srpm-macros noarch 26.2-1.fc40 fedora 4.8 KiB setup noarch 2.14.5-2.fc40 fedora 720.4 KiB sqlite-libs x86_64 3.45.1-2.fc40 fedora 1.4 MiB systemd-libs x86_64 255.4-1.fc40 fedora 1.9 MiB util-linux-core x86_64 2.40-13.fc40 updates 1.5 MiB xxhash-libs x86_64 0.8.2-2.fc40 fedora 88.5 KiB xz-libs x86_64 1:5.4.6-3.fc40 fedora 209.8 KiB zig-srpm-macros noarch 1-2.fc40 fedora 1.1 KiB zip x86_64 3.0-40.fc40 fedora 703.2 KiB zlib-ng-compat x86_64 2.1.6-2.fc40 fedora 134.0 KiB zstd x86_64 1.5.6-1.fc40 updates 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 152 packages Total size of inbound packages is 53 MiB. Need to download 0 B. After this operation 178 MiB will be used (install 178 MiB, remove 0 B). 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00m00s [ 64/154] Installing libtasn1-0:4.19.0- 100% | 173.3 MiB/s | 177.5 KiB | 00m00s [ 65/154] Installing libsmartcols-0:2.4 100% | 177.1 MiB/s | 181.4 KiB | 00m00s [ 66/154] Installing libcom_err-0:1.47. 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 67/154] Installing libunistring-0:1.1 100% | 288.5 MiB/s | 1.7 MiB | 00m00s [ 68/154] Installing libidn2-0:2.3.7-1. 100% | 81.8 MiB/s | 335.0 KiB | 00m00s [ 69/154] Installing libpsl-0:0.21.5-3. 100% | 79.7 MiB/s | 81.6 KiB | 00m00s [ 70/154] Installing util-linux-core-0: 100% | 123.7 MiB/s | 1.5 MiB | 00m00s [ 71/154] Installing tar-2:1.35-3.fc40. 100% | 245.9 MiB/s | 3.0 MiB | 00m00s [ 72/154] Installing libsemanage-0:3.6- 100% | 96.1 MiB/s | 295.3 KiB | 00m00s [ 73/154] Installing shadow-utils-2:4.1 100% | 78.7 MiB/s | 4.2 MiB | 00m00s >>> Running pre-install scriptlet: libutempter-0:1.2.1-13.fc40.x86_64 >>> Stop pre-install scriptlet: libutempter-0:1.2.1-13.fc40.x86_64 [ 74/154] Installing libutempter-0:1.2. 100% | 29.2 MiB/s | 59.7 KiB | 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Installing gdb-minimal-0:14.2 100% | 308.8 MiB/s | 12.7 MiB | 00m00s [127/154] Installing debugedit-0:5.0-14 100% | 98.5 MiB/s | 201.7 KiB | 00m00s [128/154] Installing rpm-build-libs-0:4 100% | 97.3 MiB/s | 199.2 KiB | 00m00s [129/154] Installing curl-0:8.6.0-8.fc4 100% | 36.0 MiB/s | 736.9 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Stop pre-install scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 [130/154] Installing rpm-0:4.19.1.1-1.f 100% | 74.9 MiB/s | 2.4 MiB | 00m00s [131/154] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [132/154] Installing lua-srpm-macros-0: 100% | 1.9 MiB/s | 1.9 KiB | 00m00s [133/154] Installing zig-srpm-macros-0: 100% | 1.6 MiB/s | 1.7 KiB | 00m00s [134/154] Installing rust-srpm-macros-0 100% | 5.4 MiB/s | 5.6 KiB | 00m00s [135/154] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 768.0 B | 00m00s [136/154] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [137/154] Installing 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rpm-build-0:4.19.1 100% | 35.5 MiB/s | 182.0 KiB | 00m00s [151/154] Installing pyproject-srpm-mac 100% | 1.0 MiB/s | 2.1 KiB | 00m00s [152/154] Installing util-linux-0:2.40- 100% | 73.3 MiB/s | 3.7 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40-13.fc40.x86_64 >>> Stop post-install scriptlet: util-linux-0:2.40-13.fc40.x86_64 [153/154] Installing which-0:2.21-41.fc 100% | 40.3 MiB/s | 82.4 KiB | 00m00s [154/154] Installing info-0:7.1-2.fc40. 100% | 277.4 KiB/s | 358.2 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64 >>> Running post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.f >>> Stop post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc40.x86_64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc40.x86_64 >>> Running post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Stop post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.39-8.fc40.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39-8.fc40.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-3.fc40.x86_64 ansible-srpm-macros-1-14.fc40.noarch audit-libs-4.0.1-1.fc40.x86_64 authselect-1.5.0-5.fc40.x86_64 authselect-libs-1.5.0-5.fc40.x86_64 basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.x86_64 binutils-2.41-34.fc40.x86_64 binutils-gold-2.41-34.fc40.x86_64 bzip2-1.0.8-18.fc40.x86_64 bzip2-libs-1.0.8-18.fc40.x86_64 ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch coreutils-9.4-6.fc40.x86_64 coreutils-common-9.4-6.fc40.x86_64 cpio-2.15-1.fc40.x86_64 cracklib-2.9.11-5.fc40.x86_64 crypto-policies-20240201-2.git9f501f3.fc40.noarch curl-8.6.0-8.fc40.x86_64 cyrus-sasl-lib-2.1.28-19.fc40.x86_64 debugedit-5.0-14.fc40.x86_64 diffutils-3.10-5.fc40.x86_64 dwz-0.15-6.fc40.x86_64 ed-1.20.1-1.fc40.x86_64 efi-srpm-macros-5-11.fc40.noarch elfutils-0.191-4.fc40.x86_64 elfutils-debuginfod-client-0.191-4.fc40.x86_64 elfutils-default-yama-scope-0.191-4.fc40.noarch elfutils-libelf-0.191-4.fc40.x86_64 elfutils-libs-0.191-4.fc40.x86_64 fedora-gpg-keys-40-1.noarch fedora-release-40-39.noarch fedora-release-common-40-39.noarch fedora-release-identity-basic-40-39.noarch fedora-repos-40-1.noarch file-5.45-4.fc40.x86_64 file-libs-5.45-4.fc40.x86_64 filesystem-3.18-8.fc40.x86_64 findutils-4.9.0-8.fc40.x86_64 fonts-srpm-macros-2.0.5-14.fc40.noarch forge-srpm-macros-0.2.0-3.fc40.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.x86_64 gdb-minimal-14.2-1.fc40.x86_64 gdbm-1.23-6.fc40.x86_64 gdbm-libs-1.23-6.fc40.x86_64 ghc-srpm-macros-1.9-1.fc40.noarch glibc-2.39-8.fc40.x86_64 glibc-common-2.39-8.fc40.x86_64 glibc-gconv-extra-2.39-8.fc40.x86_64 glibc-minimal-langpack-2.39-8.fc40.x86_64 gmp-6.2.1-8.fc40.x86_64 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.5.0-1.fc40.noarch gpg-pubkey-a15b79cc-63d04c2c grep-3.11-7.fc40.x86_64 gzip-1.13-1.fc40.x86_64 info-7.1-2.fc40.x86_64 jansson-2.13.1-9.fc40.x86_64 kernel-srpm-macros-1.0-23.fc40.noarch keyutils-libs-1.6.3-3.fc40.x86_64 krb5-libs-1.21.2-5.fc40.x86_64 libacl-2.3.2-1.fc40.x86_64 libarchive-3.7.2-3.fc40.x86_64 libattr-2.5.2-3.fc40.x86_64 libblkid-2.40-13.fc40.x86_64 libbrotli-1.1.0-3.fc40.x86_64 libcap-2.69-8.fc40.x86_64 libcap-ng-0.8.4-4.fc40.x86_64 libcom_err-1.47.0-5.fc40.x86_64 libcurl-8.6.0-8.fc40.x86_64 libeconf-0.6.2-1.fc40.x86_64 libevent-2.1.12-12.fc40.x86_64 libfdisk-2.40-13.fc40.x86_64 libffi-3.4.4-7.fc40.x86_64 libgcc-14.0.1-0.15.fc40.x86_64 libgomp-14.0.1-0.15.fc40.x86_64 libidn2-2.3.7-1.fc40.x86_64 libmount-2.40-13.fc40.x86_64 libnghttp2-1.59.0-3.fc40.x86_64 libnsl2-2.0.1-1.fc40.x86_64 libpkgconf-2.1.0-1.fc40.x86_64 libpsl-0.21.5-3.fc40.x86_64 libpwquality-1.4.5-9.fc40.x86_64 libselinux-3.6-4.fc40.x86_64 libsemanage-3.6-3.fc40.x86_64 libsepol-3.6-3.fc40.x86_64 libsmartcols-2.40-13.fc40.x86_64 libssh-0.10.6-5.fc40.x86_64 libssh-config-0.10.6-5.fc40.noarch libstdc++-14.0.1-0.15.fc40.x86_64 libtasn1-4.19.0-6.fc40.x86_64 libtirpc-1.3.4-1.rc3.fc40.x86_64 libtool-ltdl-2.4.7-10.fc40.x86_64 libunistring-1.1-7.fc40.x86_64 libutempter-1.2.1-13.fc40.x86_64 libuuid-2.40-13.fc40.x86_64 libverto-0.3.2-8.fc40.x86_64 libxcrypt-4.4.36-5.fc40.x86_64 libxml2-2.12.6-1.fc40.x86_64 libzstd-1.5.6-1.fc40.x86_64 lua-libs-5.4.6-5.fc40.x86_64 lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.x86_64 mpfr-4.2.1-3.fc40.x86_64 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.x86_64 ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-16.fc40.noarch openldap-2.6.7-1.fc40.x86_64 openssl-libs-3.2.1-2.fc40.x86_64 p11-kit-0.25.3-4.fc40.x86_64 p11-kit-trust-0.25.3-4.fc40.x86_64 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.0-2.fc40.x86_64 pam-libs-1.6.0-2.fc40.x86_64 patch-2.7.6-24.fc40.x86_64 pcre2-10.42-2.fc40.2.x86_64 pcre2-syntax-10.42-2.fc40.2.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-2.1.0-1.fc40.x86_64 pkgconf-m4-2.1.0-1.fc40.noarch pkgconf-pkg-config-2.1.0-1.fc40.x86_64 popt-1.19-6.fc40.x86_64 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.12.0-1.fc40.noarch python-srpm-macros-3.12-7.fc40.noarch qt5-srpm-macros-5.15.13-1.fc40.noarch qt6-srpm-macros-6.7.0-1.fc40.noarch readline-8.2-8.fc40.x86_64 redhat-rpm-config-286-1.fc40.noarch rpm-4.19.1.1-1.fc40.x86_64 rpm-build-4.19.1.1-1.fc40.x86_64 rpm-build-libs-4.19.1.1-1.fc40.x86_64 rpm-libs-4.19.1.1-1.fc40.x86_64 rpm-sequoia-1.6.0-2.fc40.x86_64 rust-srpm-macros-26.2-1.fc40.noarch sed-4.9-1.fc40.x86_64 setup-2.14.5-2.fc40.noarch shadow-utils-4.15.1-2.fc40.x86_64 sqlite-libs-3.45.1-2.fc40.x86_64 systemd-libs-255.4-1.fc40.x86_64 tar-1.35-3.fc40.x86_64 unzip-6.0-63.fc40.x86_64 util-linux-2.40-13.fc40.x86_64 util-linux-core-2.40-13.fc40.x86_64 which-2.21-41.fc40.x86_64 xxhash-libs-0.8.2-2.fc40.x86_64 xz-5.4.6-3.fc40.x86_64 xz-libs-5.4.6-3.fc40.x86_64 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.x86_64 zlib-ng-compat-2.1.6-2.fc40.x86_64 zstd-1.5.6-1.fc40.x86_64 Start: buildsrpm Start: rpmbuild -bs warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-pedgene-3.9-1.fc40.copr7360210.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-40-x86_64-1714187383.566076/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-40-x86_64-1714187383.566076/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-zva2umd9/R-CRAN-pedgene/R-CRAN-pedgene.spec) Config(child) 0 minutes 16 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-pedgene-3.9-1.fc40.copr7360210.src.rpm) Config(fedora-40-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-40-x86_64-1714187383.566076/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.19.2-1.fc39.noarch python3-dnf-plugins-core-4.6.0-1.fc39.noarch yum-4.19.2-1.fc39.noarch dnf5-5.1.17-1.fc39.x86_64 dnf5-plugins-5.1.17-1.fc39.x86_64 Finish: chroot init Start: build phase for R-CRAN-pedgene-3.9-1.fc40.copr7360210.src.rpm Start: build setup for R-CRAN-pedgene-3.9-1.fc40.copr7360210.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-pedgene-3.9-1.fc40.copr7360210.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Updating and loading repositories: updates 100% | 54.8 KiB/s | 21.8 KiB | 00m00s fedora 100% | 147.3 KiB/s | 22.7 KiB | 00m00s Copr repository 100% | 4.1 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 9.3 MiB/s | 13.5 MiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing: R-CRAN-CompQuadForm x86_64 1.4.3-3.fc40.copr7350303 copr_base 78.8 KiB R-CRAN-Matrix x86_64 1.6.5-1.fc40.copr7355271 copr_base 7.2 MiB R-CRAN-kinship2 noarch 1.9.6.1-1.fc40.copr7358245 copr_base 870.2 KiB R-CRAN-survey x86_64 4.4.2-1.fc40.copr7357996 copr_base 4.3 MiB R-core x86_64 4.4.0-1.fc40~bootstrap copr_base 100.7 MiB R-devel x86_64 4.4.0-1.fc40~bootstrap copr_base 0.0 B Installing dependencies: R-CRAN-DBI noarch 1.2.2-1.fc40.copr7349980 copr_base 1.9 MiB R-CRAN-Rcpp x86_64 1.0.12-1.fc40.copr7349917 copr_base 8.3 MiB R-CRAN-evaluate noarch 0.23-1.fc40.copr7349992 copr_base 122.1 KiB R-CRAN-highr noarch 0.10-1.fc40.copr7353625 copr_base 71.7 KiB R-CRAN-knitr noarch 1.46-1.fc40.copr7356108 copr_base 1.6 MiB R-CRAN-lattice x86_64 0.22.6-1.fc40.copr7352639 copr_base 2.0 MiB R-CRAN-minqa x86_64 1.2.6-1.fc40.copr7353605 copr_base 219.6 KiB R-CRAN-mitools noarch 2.4-3.fc40.copr7353752 copr_base 437.0 KiB R-CRAN-numDeriv noarch 2016.8.1.1-3.fc40.copr7350037 copr_base 151.0 KiB R-CRAN-quadprog x86_64 1.5.8-3.fc40.copr7350112 copr_base 59.7 KiB R-CRAN-survival x86_64 3.6.4-1.fc40.copr7357273 copr_base 8.6 MiB R-CRAN-xfun x86_64 0.43-1.fc40.copr7349940 copr_base 816.9 KiB R-CRAN-yaml x86_64 2.3.8-1.fc40.copr7349946 copr_base 274.9 KiB R-core-devel x86_64 4.4.0-1.fc40~bootstrap copr_base 394.1 KiB R-java x86_64 4.4.0-1.fc40~bootstrap copr_base 0.0 B R-java-devel x86_64 4.4.0-1.fc40~bootstrap copr_base 0.0 B R-littler x86_64 0.3.19-3.fc40 fedora 189.7 KiB R-rpm-macros noarch 1.2.1-9.fc40 fedora 5.6 KiB abattis-cantarell-vf-fonts noarch 0.301-12.fc40 fedora 192.7 KiB alsa-lib x86_64 1.2.11-2.fc40 fedora 1.4 MiB annobin-docs noarch 12.46-1.fc40 updates 95.7 KiB annobin-plugin-gcc x86_64 12.46-1.fc40 updates 969.9 KiB avahi-libs x86_64 0.8-26.fc40 fedora 166.3 KiB brotli x86_64 1.1.0-3.fc40 fedora 31.8 KiB brotli-devel x86_64 1.1.0-3.fc40 fedora 65.6 KiB bzip2-devel x86_64 1.0.8-18.fc40 fedora 309.8 KiB cairo x86_64 1.18.0-3.fc40 fedora 1.7 MiB cmake-filesystem x86_64 3.28.2-1.fc40 fedora 0.0 B copy-jdk-configs noarch 4.1-5.fc40 fedora 20.3 KiB cpp x86_64 14.0.1-0.15.fc40 fedora 34.9 MiB crypto-policies-scripts noarch 20240201-2.git9f501f3.fc40 fedora 313.8 KiB cups-libs x86_64 1:2.4.7-13.fc40 updates 618.9 KiB dbus-libs x86_64 1:1.14.10-3.fc40 fedora 368.9 KiB default-fonts-core-sans noarch 4.0-12.fc40 fedora 11.9 KiB desktop-file-utils x86_64 0.26-12.fc40 fedora 226.0 KiB emacs-filesystem noarch 1:29.3-5.fc40 updates 0.0 B expat x86_64 2.6.2-1.fc40 updates 280.8 KiB flexiblas x86_64 3.4.2-1.fc40 fedora 46.9 KiB flexiblas-devel x86_64 3.4.2-1.fc40 fedora 4.7 MiB flexiblas-netlib x86_64 3.4.2-1.fc40 fedora 10.4 MiB flexiblas-netlib64 x86_64 3.4.2-1.fc40 fedora 10.5 MiB flexiblas-openblas-openmp x86_64 3.4.2-1.fc40 fedora 39.3 KiB flexiblas-openblas-openmp64 x86_64 3.4.2-1.fc40 fedora 39.3 KiB fontconfig x86_64 2.15.0-4.fc40 fedora 767.3 KiB fontconfig-devel x86_64 2.15.0-4.fc40 fedora 117.2 KiB fonts-filesystem noarch 1:2.0.5-14.fc40 fedora 0.0 B freetype x86_64 2.13.2-5.fc40 fedora 842.6 KiB freetype-devel x86_64 2.13.2-5.fc40 fedora 7.8 MiB fribidi x86_64 1.0.13-4.fc40 fedora 365.3 KiB gc x86_64 8.2.2-6.fc40 fedora 258.7 KiB gcc x86_64 14.0.1-0.15.fc40 fedora 104.0 MiB gcc-c++ x86_64 14.0.1-0.15.fc40 fedora 38.1 MiB gcc-gfortran x86_64 14.0.1-0.15.fc40 fedora 37.2 MiB gcc-plugin-annobin x86_64 14.0.1-0.15.fc40 fedora 57.1 KiB gettext x86_64 0.22.5-2.fc40 fedora 5.2 MiB gettext-envsubst x86_64 0.22.5-2.fc40 fedora 74.9 KiB gettext-libs x86_64 0.22.5-2.fc40 fedora 1.7 MiB gettext-runtime x86_64 0.22.5-2.fc40 fedora 481.3 KiB glib2 x86_64 2.80.0-1.fc40 fedora 14.4 MiB glib2-devel x86_64 2.80.0-1.fc40 fedora 15.4 MiB glibc-devel x86_64 2.39-8.fc40 updates 36.3 KiB glibc-headers-x86 noarch 2.39-8.fc40 updates 2.2 MiB gnutls x86_64 3.8.5-1.fc40 updates 3.2 MiB google-noto-fonts-common noarch 20240301-2.fc40 fedora 17.5 KiB google-noto-sans-vf-fonts noarch 20240301-2.fc40 fedora 1.2 MiB graphite2 x86_64 1.3.14-15.fc40 fedora 192.0 KiB graphite2-devel x86_64 1.3.14-15.fc40 fedora 49.1 KiB guile30 x86_64 3.0.7-12.fc40 fedora 51.5 MiB harfbuzz x86_64 8.3.0-5.fc40 fedora 2.6 MiB harfbuzz-devel x86_64 8.3.0-5.fc40 fedora 5.1 MiB harfbuzz-icu x86_64 8.3.0-5.fc40 fedora 15.5 KiB java-21-openjdk x86_64 1:21.0.2.0.13-3.fc40 fedora 1.1 MiB java-21-openjdk-devel x86_64 1:21.0.2.0.13-3.fc40 fedora 11.2 MiB java-21-openjdk-headless x86_64 1:21.0.2.0.13-3.fc40 fedora 204.9 MiB javapackages-filesystem noarch 6.2.0-9.fc40 fedora 1.9 KiB jbigkit-libs x86_64 2.1-29.fc40 fedora 117.6 KiB kernel-headers x86_64 6.8.3-300.fc40 fedora 6.2 MiB libICE x86_64 1.1.1-3.fc40 fedora 181.2 KiB libRmath x86_64 4.4.0-1.fc40~bootstrap copr_base 242.8 KiB libRmath-devel x86_64 4.4.0-1.fc40~bootstrap copr_base 17.4 KiB libSM x86_64 1.2.4-3.fc40 fedora 97.3 KiB libX11 x86_64 1.8.9-1.fc40 updates 1.3 MiB libX11-common noarch 1.8.9-1.fc40 updates 1.1 MiB libX11-devel x86_64 1.8.9-1.fc40 updates 1.0 MiB libX11-xcb x86_64 1.8.9-1.fc40 updates 15.0 KiB libXau x86_64 1.0.11-6.fc40 fedora 66.9 KiB libXau-devel x86_64 1.0.11-6.fc40 fedora 6.4 KiB libXcomposite x86_64 0.4.6-3.fc40 fedora 44.5 KiB libXext x86_64 1.3.6-1.fc40 fedora 90.1 KiB libXft x86_64 2.3.8-6.fc40 fedora 164.5 KiB libXft-devel x86_64 2.3.8-6.fc40 fedora 31.7 KiB libXi x86_64 1.8.1-5.fc40 fedora 80.7 KiB libXmu x86_64 1.2.0-1.fc40 updates 186.4 KiB libXrender x86_64 0.9.11-6.fc40 fedora 50.1 KiB libXrender-devel x86_64 0.9.11-6.fc40 fedora 50.1 KiB libXt x86_64 1.3.0-3.fc40 fedora 425.9 KiB libXtst x86_64 1.2.4-6.fc40 fedora 33.6 KiB libb2 x86_64 0.98.1-11.fc40 fedora 42.2 KiB libblkid-devel x86_64 2.40-13.fc40 updates 44.9 KiB libdatrie x86_64 0.2.13-9.fc40 fedora 57.9 KiB libffi-devel x86_64 3.4.4-7.fc40 fedora 33.3 KiB libfontenc x86_64 1.1.7-3.fc40 fedora 65.0 KiB libgfortran x86_64 14.0.1-0.15.fc40 fedora 2.9 MiB libicu x86_64 74.2-1.fc40 fedora 34.9 MiB libicu-devel x86_64 74.2-1.fc40 fedora 5.6 MiB libjpeg-turbo x86_64 3.0.2-1.fc40 fedora 776.9 KiB liblerc x86_64 4.0.0-6.fc40 fedora 603.5 KiB libmount-devel x86_64 2.40-13.fc40 updates 63.5 KiB libmpc x86_64 1.3.1-5.fc40 fedora 164.7 KiB libpng x86_64 2:1.6.40-3.fc40 fedora 241.8 KiB libpng-devel x86_64 2:1.6.40-3.fc40 fedora 881.5 KiB libquadmath x86_64 14.0.1-0.15.fc40 fedora 325.9 KiB libquadmath-devel x86_64 14.0.1-0.15.fc40 fedora 21.8 KiB libselinux-devel x86_64 3.6-4.fc40 fedora 126.1 KiB libsepol-devel x86_64 3.6-3.fc40 fedora 120.2 KiB libstdc++-devel x86_64 14.0.1-0.15.fc40 fedora 15.4 MiB libthai x86_64 0.1.29-8.fc40 fedora 783.5 KiB libtiff x86_64 4.6.0-2.fc40 fedora 1.1 MiB libtirpc-devel x86_64 1.3.4-1.rc3.fc40 fedora 251.6 KiB libwebp x86_64 1.3.2-5.fc40 fedora 793.6 KiB libxcb x86_64 1.16-4.fc40 fedora 1.1 MiB libxcb-devel x86_64 1.16-4.fc40 fedora 2.7 MiB libxcrypt-devel x86_64 4.4.36-5.fc40 fedora 30.3 KiB libxml2-devel x86_64 2.12.6-1.fc40 updates 3.4 MiB lksctp-tools x86_64 1.0.19-6.fc40 fedora 269.6 KiB lua x86_64 5.4.6-5.fc40 fedora 597.8 KiB lua-posix x86_64 36.2.1-6.fc40 fedora 599.7 KiB make x86_64 1:4.4.1-6.fc40 fedora 1.8 MiB mkfontscale x86_64 1.2.2-6.fc40 fedora 49.2 KiB mpdecimal x86_64 2.5.1-9.fc40 fedora 200.9 KiB nettle x86_64 3.9.1-6.fc40 fedora 790.1 KiB nspr x86_64 4.35.0-22.fc40 updates 312.6 KiB nss x86_64 3.99.0-1.fc40 updates 1.9 MiB nss-softokn x86_64 3.99.0-1.fc40 updates 1.9 MiB nss-softokn-freebl x86_64 3.99.0-1.fc40 updates 896.6 KiB nss-sysinit x86_64 3.99.0-1.fc40 updates 18.2 KiB nss-util x86_64 3.99.0-1.fc40 updates 226.1 KiB openblas x86_64 0.3.26-4.fc40 fedora 96.0 KiB openblas-openmp x86_64 0.3.26-4.fc40 fedora 38.9 MiB openblas-openmp64 x86_64 0.3.26-4.fc40 fedora 39.1 MiB pango x86_64 1.52.2-1.fc40 updates 995.9 KiB pcre2-devel x86_64 10.42-2.fc40.2 fedora 1.9 MiB pcre2-utf16 x86_64 10.42-2.fc40.2 fedora 570.2 KiB pcre2-utf32 x86_64 10.42-2.fc40.2 fedora 542.1 KiB pixman x86_64 0.43.0-3.fc40 fedora 714.1 KiB python-pip-wheel noarch 23.3.2-1.fc40 fedora 1.5 MiB python3 x86_64 3.12.2-2.fc40 fedora 31.9 KiB python3-libs x86_64 3.12.2-2.fc40 fedora 41.0 MiB python3-packaging noarch 23.2-4.fc40 fedora 421.1 KiB sysprof-capture-devel x86_64 46.0-1.fc40 fedora 252.8 KiB tcl x86_64 1:8.6.13-2.fc40 fedora 4.2 MiB tcl-devel x86_64 1:8.6.13-2.fc40 fedora 809.0 KiB tk x86_64 1:8.6.13-3.fc40 fedora 3.6 MiB tk-devel x86_64 1:8.6.13-3.fc40 fedora 983.9 KiB tre x86_64 0.8.0-43.20140228gitc2f5d13.fc40 fedora 75.9 KiB tre-common noarch 0.8.0-43.20140228gitc2f5d13.fc40 fedora 81.0 KiB tre-devel x86_64 0.8.0-43.20140228gitc2f5d13.fc40 fedora 10.7 KiB ttmkfdir x86_64 3.0.9-70.fc40 fedora 122.7 KiB tzdata noarch 2024a-5.fc40 updates 1.6 MiB tzdata-java noarch 2024a-5.fc40 updates 101.7 KiB xdg-utils noarch 1.2.1-1.fc40 fedora 346.3 KiB xml-common noarch 0.6.3-63.fc40 fedora 78.4 KiB xorg-x11-fonts-Type1 noarch 7.5-38.fc40 fedora 863.3 KiB xorg-x11-proto-devel noarch 2024.1-1.fc40 updates 1.7 MiB xz-devel x86_64 1:5.4.6-3.fc40 fedora 255.8 KiB zlib-ng-compat-devel x86_64 2.1.6-2.fc40 fedora 103.4 KiB Transaction Summary: Installing: 172 packages Total size of inbound packages is 299 MiB. Need to download 7 MiB. After this operation 950 MiB will be used (install 950 MiB, remove 0 B). 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Finish: build setup for R-CRAN-pedgene-3.9-1.fc40.copr7360210.src.rpm Start: rpmbuild R-CRAN-pedgene-3.9-1.fc40.copr7360210.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.G2tpC9 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pedgene + /usr/bin/mkdir -p pedgene + cd pedgene + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pedgene_3.9.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + rm -rf /builddir/build/BUILD/pedgene-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/pedgene-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d pedgene/src ']' + true + '[' -d pedgene/src ']' + true + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.4SYppA + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pedgene + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.c3emPM + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-CRAN-pedgene-3.9-1.fc40.copr7360210.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-CRAN-pedgene-3.9-1.fc40.copr7360210.x86_64 ++ dirname /builddir/build/BUILDROOT/R-CRAN-pedgene-3.9-1.fc40.copr7360210.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-CRAN-pedgene-3.9-1.fc40.copr7360210.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pedgene + mkdir -p /builddir/build/BUILDROOT/R-CRAN-pedgene-3.9-1.fc40.copr7360210.x86_64/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-CRAN-pedgene-3.9-1.fc40.copr7360210.x86_64/usr/local/lib/R/library pedgene * installing *source* package ‘pedgene’ ... ** package ‘pedgene’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘pedgene’ finding HTML links ... done example.geno html format_relation html pedgene html pedigreeChecks html quadfactor html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pedgene) + test -d pedgene/src + rm -f /builddir/build/BUILDROOT/R-CRAN-pedgene-3.9-1.fc40.copr7360210.x86_64/usr/local/lib/R/library/R.css + find /builddir/build/BUILDROOT/R-CRAN-pedgene-3.9-1.fc40.copr7360210.x86_64/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILDROOT/R-CRAN-pedgene-3.9-1.fc40.copr7360210.x86_64@@g '{}' ';' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 3.9-1.fc40.copr7360210 --unique-debug-suffix -3.9-1.fc40.copr7360210.x86_64 --unique-debug-src-base R-CRAN-pedgene-3.9-1.fc40.copr7360210.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/pedgene find-debuginfo: starting Extracting debug info from 0 files Creating .debug symlinks for symlinks to ELF files find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: R-CRAN-pedgene-3.9-1.fc40.copr7360210.noarch Provides: R-CRAN-pedgene = 3.9-1.fc40.copr7360210 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-CRAN-pedgene-3.9-1.fc40.copr7360210.x86_64 Wrote: /builddir/build/RPMS/R-CRAN-pedgene-3.9-1.fc40.copr7360210.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.P0cdI4 + umask 022 + cd /builddir/build/BUILD + cd pedgene + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-CRAN-pedgene-3.9-1.fc40.copr7360210.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.LLpt1n + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/pedgene-SPECPARTS + rm -rf pedgene pedgene.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild R-CRAN-pedgene-3.9-1.fc40.copr7360210.src.rpm Finish: build phase for R-CRAN-pedgene-3.9-1.fc40.copr7360210.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-40-x86_64-1714187383.566076/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-pedgene-3.9-1.fc40.copr7360210.src.rpm) Config(child) 0 minutes 25 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-CRAN-pedgene", "epoch": null, "version": "3.9", "release": "1.fc40.copr7360210", "arch": "noarch" }, { "name": "R-CRAN-pedgene", "epoch": null, "version": "3.9", "release": "1.fc40.copr7360210", "arch": "src" } ] } RPMResults finished