%global __brp_check_rpaths %{nil}
%global packname  ProSGPV
%global packver   1.0.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.0
Release:          1%{?dist}%{?buildtag}
Summary:          Penalized Regression with Second-Generation P-Values

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-CRAN-glmnet 
BuildRequires:    R-CRAN-brglm2 
BuildRequires:    R-CRAN-MASS 
BuildRequires:    R-CRAN-survival 
Requires:         R-CRAN-glmnet 
Requires:         R-CRAN-brglm2 
Requires:         R-CRAN-MASS 
Requires:         R-CRAN-survival 

%description
Implementation of penalized regression with second-generation p-values for
variable selection. The algorithm can handle linear regression, GLM, and
Cox regression. S3 methods print(), summary(), coef(), predict(), and
plot() are available for the algorithm. Technical details can be found at
Zuo et al. (2021) <doi:10.1080/00031305.2021.1946150>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}