%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  GLMcat
%global packver   0.2.6
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.2.6
Release:          1%{?dist}%{?buildtag}
Summary:          Generalized Linear Models for Categorical Responses

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.10
Requires:         R-core >= 2.10
BuildRequires:    R-CRAN-Rcpp 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-ordinal 
BuildRequires:    R-CRAN-BH 
BuildRequires:    R-CRAN-RcppEigen 
Requires:         R-CRAN-Rcpp 
Requires:         R-stats 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-ordinal 

%description
In statistical modeling, there is a wide variety of regression models for
categorical dependent variables (nominal or ordinal data); yet, there is
no software embracing all these models together in a uniform and
generalized format. Following the methodology proposed by Peyhardi,
Trottier, and Guédon (2015) <doi:10.1093/biomet/asv042>, we introduce
'GLMcat', an R package to estimate generalized linear models implemented
under the unified specification (r, F, Z). Where r represents the ratio of
probabilities (reference, cumulative, adjacent, or sequential), F the
cumulative cdf function for the linkage, and Z, the design matrix.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}