%global __brp_check_rpaths %{nil}
%global packname  scaRabee
%global packver   1.1-4
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.1.4
Release:          1%{?dist}%{?buildtag}
Summary:          Optimization Toolkit for Pharmacokinetic-Pharmacodynamic Models

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-neldermead >= 1.0.8
BuildRequires:    R-CRAN-optimbase >= 1.0.8
BuildRequires:    R-CRAN-optimsimplex >= 1.0.5
BuildRequires:    R-CRAN-lattice 
BuildRequires:    R-grid 
BuildRequires:    R-CRAN-deSolve 
BuildRequires:    R-utils 
Requires:         R-CRAN-neldermead >= 1.0.8
Requires:         R-CRAN-optimbase >= 1.0.8
Requires:         R-CRAN-optimsimplex >= 1.0.5
Requires:         R-CRAN-lattice 
Requires:         R-grid 
Requires:         R-CRAN-deSolve 
Requires:         R-utils 

%description
A port of the Scarabee toolkit originally written as a Matlab-based
application. scaRabee provides a framework for simulation and optimization
of pharmacokinetic-pharmacodynamic models at the individual and population
level. It is built on top of the neldermead package, which provides the
direct search algorithm proposed by Nelder and Mead for model
optimization.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}