adjustMapLD {qgg} | R Documentation |
Adjust Linkage Disequilibrium (LD) Using Map Information
Description
Adjusts the linkage disequilibrium (LD) values based on map information, effective population size, and sample size used for map construction.
Usage
adjustMapLD(LD = NULL, map = NULL, neff = 11600, nmap = 186, threshold = 0.001)
Arguments
LD |
A matrix representing the linkage disequilibrium (LD) structure. |
map |
A numeric vector containing the map information. |
neff |
An integer representing the effective population size. Default is 11600. |
nmap |
An integer representing the sample size used for map construction. Default is 186. |
threshold |
A numeric value specifying the threshold for setting LD to zero. Currently unused in the function. Default is 0.001. |
Value
A matrix where each value is the adjusted LD based on the input map, effective population size, and map construction sample size.
[Package qgg version 1.1.2 Index]