%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  mimsy
%global packver   0.6.4
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.6.4
Release:          1%{?dist}%{?buildtag}
Summary:          Calculate MIMS Dissolved Gas Concentrations Without Getting a Headache

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-lubridate 
BuildRequires:    R-CRAN-openxlsx 
BuildRequires:    R-utils 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-lubridate 
Requires:         R-CRAN-openxlsx 
Requires:         R-utils 

%description
Calculate dissolved gas concentrations from raw MIMS (Membrane Inlet Mass
Spectrometer) signal data. Use mimsy() on a formatted CSV file to return
dissolved gas concentrations (mg and microMole) of N2, O2, Ar based on gas
solubility at temperature, pressure, and salinity. See references Benson
and Krause (1984), Garcia and Gordon (1992), Stull (1947), and Hamme and
Emerson (2004) for more information. Easily save the output to a
nicely-formatted multi-tab 'Excel' workbook with mimsy.save(). Supports
dual-temperature standard calibration for dual-bath MIMS setups.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}