%global __brp_check_rpaths %{nil} %global packname primerTree %global packver 1.0.6 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} Version: 1.0.6 Release: 1%{?dist}%{?buildtag} Summary: Visually Assessing the Specificity and Informativeness of Primer Pairs License: GPL-2 URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 3.5.0 Requires: R-core >= 3.5.0 BuildRequires: R-CRAN-directlabels BuildRequires: R-CRAN-gridExtra BuildRequires: R-CRAN-ape BuildRequires: R-CRAN-foreach BuildRequires: R-CRAN-ggplot2 BuildRequires: R-grid BuildRequires: R-CRAN-httr BuildRequires: R-CRAN-lubridate BuildRequires: R-CRAN-plyr BuildRequires: R-CRAN-reshape2 BuildRequires: R-CRAN-scales BuildRequires: R-CRAN-stringr BuildRequires: R-CRAN-XML Requires: R-CRAN-directlabels Requires: R-CRAN-gridExtra Requires: R-CRAN-ape Requires: R-CRAN-foreach Requires: R-CRAN-ggplot2 Requires: R-grid Requires: R-CRAN-httr Requires: R-CRAN-lubridate Requires: R-CRAN-plyr Requires: R-CRAN-reshape2 Requires: R-CRAN-scales Requires: R-CRAN-stringr Requires: R-CRAN-XML %description Identifies potential target sequences for a given set of primers and generates phylogenetic trees annotated with the taxonomies of the predicted amplification products. %prep %setup -q -c -n %{packname} # fix end of executable files find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; # prevent binary stripping [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ sed -i 's@-g0@@g' {} \; || true # don't allow local prefix in executable scripts find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; %build %install mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css # remove buildroot from installed files find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; %files %{rlibdir}/%{packname}