%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  babelgene
%global packver   22.9
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          22.9
Release:          1%{?dist}%{?buildtag}
Summary:          Gene Orthologs for Model Organisms in a Tidy Data Format

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.4
Requires:         R-core >= 3.4
BuildArch:        noarch
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-rlang 
Requires:         R-CRAN-dplyr 
Requires:         R-methods 
Requires:         R-CRAN-rlang 

%description
Genomic analysis of model organisms frequently requires the use of
databases based on human data or making comparisons to patient-derived
resources. This requires harmonization of gene names into the same gene
space. The 'babelgene' R package converts between human and non-human gene
orthologs/homologs. The package integrates orthology assertion predictions
sourced from multiple databases as compiled by the HGNC Comparison of
Orthology Predictions (HCOP) (Wright et al. 2005
<doi:10.1007/s00335-005-0103-2>, Eyre et al. 2007
<doi:10.1093/bib/bbl030>, Seal et al. 2011 <doi:10.1093/nar/gkq892>).

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}