%global __brp_check_rpaths %{nil}
%global packname  protein8k
%global packver   0.0.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.0.1
Release:          1%{?dist}%{?buildtag}
Summary:          Perform Analysis and Create Visualizations of Proteins

License:          CC0
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.1.2
Requires:         R-core >= 3.1.2
BuildArch:        noarch
BuildRequires:    R-CRAN-pryr 
BuildRequires:    R-CRAN-lattice 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-magick 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-grid 
BuildRequires:    R-CRAN-gridExtra 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-rjson 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-shiny 
Requires:         R-CRAN-pryr 
Requires:         R-CRAN-lattice 
Requires:         R-methods 
Requires:         R-CRAN-magick 
Requires:         R-CRAN-dplyr 
Requires:         R-grid 
Requires:         R-CRAN-gridExtra 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-rjson 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-shiny 

%description
Read Protein Data Bank (PDB) files, performs its analysis, and presents
the result using different visualization types including 3D. The package
also has additional capability for handling Virus Report data from the
National Center for Biotechnology Information (NCBI) database. Nature
Structural Biology 10, 980 (2003) <doi:10.1038/nsb1203-980>. US National
Library of Medicine (2021)
<https://www.ncbi.nlm.nih.gov/datasets/docs/reference-docs/data-reports/virus/>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}